The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Epigenetic Inactivation of the Circadian Clock Gene BMAL1 in Hematologic Malignancies
Open accessPublished version of a preprint
Abstract
Disruption of circadian rhythms, daily oscillations in biological processes that are regulated by an endogenous clock, has been linked to tumorigenesis. Normal and malignant tissues often show asynchronies in cell proliferation and metabolic rhythms. Cancer chronotherapy takes biological time into account to improve the therapy. However, alterations of the circadian clock machinery genes have rarely been reported in human cancer. Herein, we show that the BMAL1 gene, a core component of the circadian clock, is transcriptionally silenced by promoter CpG island hypermethylation in hematologic malignancies, such as diffuse large B-cell lymphoma and acute lymphocytic and myeloid leukemias. We also describe how BMAL1 reintroduction in hypermethylated leukemia/lymphoma cells causes growth inhibition in colony assays and nude mice, whereas BMAL1 depletion by RNA interference in unmethylated cells enhances tumor growth. We also show that BMAL1 epigenetic inactivation impairs the characteristic circadian clock expression pattern of genes such as C-MYC, catalase, and p300 in association with a loss of BMAL1 occupancy in their respective promoters. Furthermore, the DNA hypermethylation–associated loss of BMAL1 also prevents the recruitment of its natural partner, the CLOCK protein, to their common targets, further enhancing the perturbed circadian rhythm of the malignant cells. These findings suggest that BMAL1 epigenetic inactivation contributes to the development of hematologic malignancies by disrupting the cellular circadian clock. [Cancer Res 2009;69(21):8447–54]
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Kondratov, R. V., Kondratova, A. A., Gorbacheva, V. Y., Vykhovanets, O. V., & Antoch, M. P. (2006) · Genes & Development · doi:10.1101/gad.1432206 · Cited by 1,188
Rhythmic histone acetylation underlies transcription in the mammalian circadian clock
Etchegaray, J.-P., Lee, C., Wade, P. A., & Reppert, S. M. (2003) · Nature · doi:10.1038/nature01314 · Cited by 679
The circadian clock: pacemaker and tumour suppressor
Fu, L., & Lee, C. C. (2003) · Nature reviews. Cancer · doi:10.1038/nrc1072 · Cited by 678
Epigenetic inactivation of the premature aging Werner syndrome gene in human cancer
Agrelo, R., Cheng, W.-H., Setien, F., Ropero, S., Espada, J., Fraga, M. F., Herranz, M., Paz, M. F., Sanchez-Cespedes, M., Artiga, M. J., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0600645103 · Cited by 264 · cited 1×
“Because the Lamin A/C and WRN genes undergo DNA methylation-associated silencing in human cancer (23, 24), and because there is increasing evidence that disrupted circadian clocks affect human tumorigenesis (11, 25), we examined whether epigenetic silencing of BMAL1 was involved in the development of human malignancie…”
BackgroundSelf-citationMolecular bases of progeroid syndromes
Navarro, C. L., Cau, P., & Lévy, N. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl214 · Cited by 189
Research works printed but not linked: 26
- Zylka, 1998, Molecular analysis of mammalian timeless, Neuron, 21, 1115, 10.1016/S0896-6273(00)80628-5 · DOI · Paper page
- Schibler, 2002, A web of circadian pacemakers, Cell, 111, 919, 10.1016/S0092-8674(02)01225-4 · DOI · Paper page
- Nagoshi, 2004, Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells, Cell, 119, 693, 10.1016/j.cell.2004.11.015 · DOI · Paper page
- Balsalobre, 1998, A serum shock induces circadian gene expression in mammalian tissue culture cells, Cell, 93, 929, 10.1016/S0092-8674(00)81199-X · DOI · Paper page
- Klevecz, 1987, Circadian gating of S phase in human ovarian cancer, Cancer Res, 47, 6267
- Barbason, 1995, Importance of cell kinetics rhythmicity for the control of cell proliferation and carcinogenesis in rat liver (review), In Vivo, 9, 539
- Canaple, 2003, The days and nights of cancer cells, Cancer Res, 63, 7545
- Levi, 2007, Cross-talks between circadian timing system and cell division cycle determine cancer biology and therapeutics, Cold Spring Harbor Symp Quant Biol, 72, 465, 10.1101/sqb.2007.72.030 · DOI
- Altinok, 2009, Identifying mechanisms of chronotolerance and chronoefficacy for the anticancer drugs 5-fluorouracil and oxaliplatin by computational modeling, Eur J Pharm Sci, 36, 20, 10.1016/j.ejps.2008.10.024 · DOI
- Kang, 2009, Circadian regulation of DNA excision repair: implications for chrono-chemotherapy, Cell Cycle, 8, 1665, 10.4161/cc.8.11.8707 · DOI
- Hunt, 2007, Riding tandem: circadian clocks and the cell cycle, Cell, 129, 461, 10.1016/j.cell.2007.04.015 · DOI · Paper page
- Panda, 2002, Coordinated transcription of key pathways in the mouse by the circadian clock, Cell, 109, 307, 10.1016/S0092-8674(02)00722-5 · DOI · Paper page
- Storch, 2002, Extensive and divergent circadian gene expression in liver and heart, Nature, 417, 78, 10.1038/nature744 · DOI · Paper page
- Fu, 2002, The circadian gene Period2 plays an important role in tumor suppression and DNA damage response in vivo, Cell, 111, 41, 10.1016/S0092-8674(02)00961-3 · DOI · Paper page
- Gery, 2005, Transcription profiling of C/EBP targets identifies Per2 as a gene implicated in myeloid leukemia, Blood, 106, 2827, 10.1182/blood-2005-01-0358 · DOI · Paper page
- Gery, 2006, The circadian gene per1 plays an important role in cell growth and DNA damage control in human cancer cells, Mol Cell, 22, 375, 10.1016/j.molcel.2006.03.038 · DOI · Paper page
- Shih, 2006, Promoter methylation in circadian genes of endometrial cancers detected by methylation-specific PCR, Mol Carcinog, 45, 732, 10.1002/mc.20198 · DOI
- Yang, 2006, Downregulation of circadian clock genes in chronic myeloid leukemia: alternative methylation pattern of hPER3, Cancer Sci, 97, 1298, 10.1111/j.1349-7006.2006.00331.x · DOI
- Bunger, 2000, Mop3 is an essential component of the master circadian pacemaker in mammals, Cell, 103, 1009, 10.1016/S0092-8674(00)00205-1 · DOI · Paper page
- Doi, 2006, Circadian regulator CLOCK is a histone acetyltransferase, Cell, 125, 497, 10.1016/j.cell.2006.03.033 · DOI · Paper page
- Agrelo, 2005, Inactivation of the lamin A/C gene by CpG island promoter hypermethylation in hematologic malignancies, and its association with poor survival in nodal diffuse large B-cell lymphoma, J Clin Oncol, 23, 3940, 10.1200/JCO.2005.11.650 · DOI
- Sun, 2006, MOP3, a component of the molecular clock, regulates the development of B cells, Immunology, 119, 451, 10.1111/j.1365-2567.2006.02456.x · DOI
- Singh, 2003, Circadian periodicity of plasma lipid peroxides and other anti-oxidants as putative markers in gynecological malignancies, In Vivo, 17, 593
- Du, 2005, Circadian expression of clock and screening of clock-controlled genes in peripheral lymphocytes of rat, Biochem Biophys Res Commun, 336, 1069, 10.1016/j.bbrc.2005.08.228 · DOI
- Jones, 2007, The epigenomics of cancer, Cell, 128, 683, 10.1016/j.cell.2007.01.029 · DOI · Paper page
- Esteller, 2008, Epigenetics in cancer, N Engl J Med, 358, 1148, 10.1056/NEJMra072067 · DOI · Paper page
Cited by
Circadian control of the immune system
Scheiermann, C., Kunisaki, Y., & Frenette, P. S. (2013) · Nature Reviews Immunology · doi:10.1038/nri3386 · Cited by 1,135
Circadian Rhythm Disruption Promotes Lung Tumorigenesis
Papagiannakopoulos, T., Bauer, M. R., Davidson, S. M., Heimann, M., Subbaraj, L., Bhutkar, A., Bartlebaugh, J., Vander Heiden, M. G., & Jacks, T. (2016) · Cell Metabolism · doi:10.1016/j.cmet.2016.07.001 · Cited by 557
“Cell-autonomous loss of circadian rhythms in human malignancies may occur through both genetic and epigenetic mechanisms (Alhopuro et al., 2010; Chen et al., 2005; Kettner et al., 2014; Taniguchi et al., 2009).”
The emerging link between cancer, metabolism, and circadian rhythms
Masri, S., & Sassone-Corsi, P. (2018) · Nature Medicine · doi:10.1038/s41591-018-0271-8 · Cited by 404
MYC Disrupts the Circadian Clock and Metabolism in Cancer Cells
Altman, B. J., Hsieh, A. L., Sengupta, A., Krishnanaiah, S. Y., Stine, Z. E., Walton, Z. E., Gouw, A. M., Venkataraman, A., Li, B., Goraksha-Hicks, P., et al. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.09.003 · Cited by 274
The circadian clock in cancer development and therapy
Fu, L., & Kettner, N. M. (2013) · Progress in Molecular Biology and Translational Science · doi:10.1016/b978-0-12-396971-2.00009-9 · Cited by 251
Metadata
- Authors
- Taniguchi, H., Fernández, A. F., Setién, F., Ropero, S., Ballestar, E., Villanueva, A., Yamamoto, H., Imai, K., Shinomura, Y., & Esteller, M.
- Venue
- Cancer Research
- Published
- 2009-10-28
- Volume
- 69
- Issue
- 21
- Pages
- 8447-8454
- ISSN
- 0008-5472 (ISSN-L)
- 1538-7445
- OpenAlex
- W2160589871
- Cited by
- 181
- References
- 5
- FWCI
- 4.60
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Epigenetic Inactivation of the Circadian Clock Gene BMAL1 in Hematologic Malignancies. https://app.cochat.ai/papers/10.1158/0008-5472.can-09-0551
- The paper
- Taniguchi, H., Fernández, A. F., Setién, F., Ropero, S., Ballestar, E., Villanueva, A., Yamamoto, H., Imai, K., Shinomura, Y., & Esteller, M. (2009). Epigenetic Inactivation of the Circadian Clock Gene BMAL1 in Hematologic Malignancies. Cancer Research. https://doi.org/10.1158/0008-5472.can-09-0551
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.