Cited by 191Genetic diversity and population structureCoral and Marine Ecosystems StudiesFish Biology and Ecology Studies

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Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle

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Gaither, Michelle R, Bowen, Brian W, Bordenave, Tiana-Rae, Rocha, Luiz A, Newman, Stephen J, Gomez, Juan A, van Herwerden, Lynne, Craig, Matthew T·2011·BMC Evolutionary Biology

DOI 10.1186/1471-2148-11-189PMC PMC3145601

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Abstract

BACKGROUND: The Coral Triangle (CT), bounded by the Philippines, the Malay Peninsula, and New Guinea, is the epicenter of marine biodiversity. Hypotheses that explain the source of this rich biodiversity include 1) the center of origin, 2) the center of accumulation, and 3) the region of overlap. Here we contribute to the debate with a phylogeographic survey of a widely distributed reef fish, the Peacock Grouper (Cephalopholis argus; Epinephelidae) at 21 locations (N = 550) using DNA sequence data from mtDNA cytochrome b and two nuclear introns (gonadotropin-releasing hormone and S7 ribosomal protein). RESULTS: Population structure was significant (ΦST = 0.297, P < 0.001; FST = 0.078, P < 0.001; FST = 0.099, P < 0.001 for the three loci, respectively) among five regions: French Polynesia, the central-west Pacific (Line Islands to northeastern Australia), Indo-Pacific boundary (Bali and Rowley Shoals), eastern Indian Ocean (Cocos/Keeling and Christmas Island), and western Indian Ocean (Diego Garcia, Oman, and Seychelles). A strong signal of isolation by distance was detected in both mtDNA (r = 0.749, P = 0.001) and the combined nuclear loci (r = 0.715, P < 0.001). We detected evidence of population expansion with migration toward the CT. Two clusters of haplotypes were detected in the mtDNA data (d = 0.008), corresponding to the Pacific and Indian Oceans, with a low level of introgression observed outside a mixing zone at the Pacific-Indian boundary. CONCLUSIONS: We conclude that the Indo-Pacific Barrier, operating during low sea level associated with glaciation, defines the primary phylogeographic pattern in this species. These data support a scenario of isolation on the scale of 105 year glacial cycles, followed by population expansion toward the CT, and overlap of divergent lineages at the Pacific-Indian boundary. This pattern of isolation, divergence, and subsequent overlap likely contributes to species richness at the adjacent CT and is consistent with the region of overlap hypothesis.

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Figure 1 Map of study area. Pie charts represent the ratio of individuals at each location with either the Pacific or Indian Ocean lineage as defined in Figure 2 (Photo credit: Luiz Rocha).CC BY · PubMed Central

Figure 2 Median-joining networks for Cephalopholis argus. Networks were constructed using the program NETWORK 4.5 [43] for (a) 550 cytochrome b sequences (b) alleles at GnRH intron from 488 individuals, and (c) alleles at S7 intron for 490 individuals. Each circle represents one mitochondrial haplotype or nuclear allele with the area of each circle proportional to the number of that particular haplotype or allele in the dataset; dashes represent hypothetical haplotypes or alleles; colors represent collection location (see key).CC BY · PubMed Central

Figure 3 Phylogenetic tree of Cephalopholis argus cytochrome b haplotypes. The best maximum likelihood tree generated using program default settings in RAxML [44] and rooted using two congenerics (C. urodeta and C. taeniops). Bootstrap support values were calculated using default settings with 1000 replicates. For comparison neighbor-joining bootstrap values (1000 bootstrap replicates) and Bayesian posterior probabilities are presented. Colored bars delineate the Pacific and Indian Ocean lineages separated by three fixed differences (see figure 1).CC BY · PubMed Central

Figure 4 Mismatch distribution for Cephalopholis argus. Mismatch distribution based on 550 cytochrome b sequences from twenty-one populations. The dark colored line represents the observed and light colored line is the simulated pairwise differences as reported by DnaSP 5.0 [39]. The Harpending's raggedness index as calculated in ARLEQUIN 3.5 [42] and corresponding P-value are shown.CC BY · PubMed Central

Figure 5 Migration rates for Cephalopholis argus. Migration rates (Nm: where N is effective female population size and m is migration rate) based on cytochrome b sequences calculated using MIGRATE 3.1.6 [54,55]. Locations with non-significant pairwise ΦST values were grouped (see Table 2). French Polynesia (FP) = Marquesas and Moorea; central-west Pacific (CW) = Kiritimati, Palmyra, Samoa/Tokelau, Baker/Howland, Kwajalein, Pohnpei, Saipan, Palau, Lizard Island, Philippines, and Scott Reef; Indo-Pacific boundary (IB) = Bali and Rowley Shoals; eastern Indian Ocean (EI) = Christmas Island and Cocos/Keeling; western Indian Ocean (WI) = Sumatra, Diego Garcia, Oman, and Seychelles. The direction of migration is indicated. Numbers of migrants per generation between geographic regions are reported with 95% confidence intervals in parentheses.CC BY · PubMed Central

Figure 6 Map of Indo-Malaysia region during glacial maxima. Map shows the effect of lowered sea level on habitat in the region during Pleisotocene glacial maxima (Figure credit: Eric Franklin).CC BY · PubMed Central

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Ludt, W. B., Bernal, M. A., Bowen, B. W., & Rocha, L. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038042 · Cited by 40
“This pattern is consistent with previous findings where species ranges may have been sundered during sea level lows and then subsequently reconnected [8,39,40].”
ResultSelf-citation
Genetic diversity within grouper species and a method for interspecific hybrid identification using DNA barcoding and RYR3 marker
Qu, M., Tang, W., Liu, Q., Wang, D., & Ding, S. (2017) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2017.12.031 · Cited by 40
Phylogeography, population structure and evolution of coral‐eating butterflyfishes (Family Chaetodontidae, genus Chaetodon, subgenus Corallochaetodon)
Waldrop, E., Hobbs, J., Randall, J. E., DiBattista, J. D., Rocha, L. A., Kosaki, R. K., Berumen, M. L., & Bowen, B. W. (2016) · Journal of Biogeography · doi:10.1111/jbi.12680 · Cited by 39
“Population differentiation between Hawai’i and other Pacific locations has been reported in many other reef fishes (Leray et al., 2010; DiBattista et al., 2011; Gaither et al., 2011; Szabo et al., 2014; Fernandez-Silva et al., 2015).”
BackgroundSelf-citation
Effects of species biology on the historical demography of sharks and their implications for likely consequences of contemporary climate change
O’Brien, S. M., Gallucci, V. F., & Hauser, L. (2012) · Conservation Genetics · doi:10.1007/s10592-012-0437-8 · Cited by 38
“Keywords Chondrichthyes Bayesian demographic reconstruction Mismatch analysis Mitochondrial DNA Climate change”
Phylogeography of Indo‐Pacific reef fishes: sister wrasses Coris gaimard and C. cuvieri in the Red Sea, Indian Ocean and Pacific Ocean
Ahti, P. A., Coleman, R. R., DiBattista, J. D., Berumen, M. L., Rocha, L. A., & Bowen, B. W. (2016) · Journal of Biogeography · doi:10.1111/jbi.12712 · Cited by 39
Self-citation
Phylogeographic Analyses of Submesophotic Snappers Etelis coruscans and Etelis “marshi” (Family Lutjanidae) Reveal Concordant Genetic Structure across the Hawaiian Archipelago
Andrews, K. R., Moriwake, V. N., Wilcox, C. L., Grau, E. G., Kelley, C., Pyle, R. L., & Bowen, B. W. (2014) · PLoS ONE · doi:10.1371/journal.pone.0091665 · Cited by 36
Self-citation
Genetic diversity, population genetic structure, and demographic history of Auxis thazard (Perciformes), Selar crumenophthalmus (Perciformes), Rastrelliger kanagurta (Perciformes) and Sardinella lemuru (Clupeiformes) in Sulu-Celebes Sea inferred by mitochondrial DNA sequences
Pedrosa‐Gerasmio, I. R., Agmata, A. B., & Santos, M. D. (2014) · Fisheries Research · doi:10.1016/j.fishres.2014.10.006 · Cited by 36
Linking ciguatera poisoning to spatial ecology of fish: A novel approach to examining the distribution of biotoxin levels in the great barracuda by combining non-lethal blood sampling and biotelemetry
O’Toole, A. C., Bottein, M. D., Danylchuk, A. J., Ramsdell, J. S., & Cooke, S. J. (2012) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2011.11.053 · Cited by 35
Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Takeuchi, T., Masaoka, T., Aoki, H., Koyanagi, R., Fujie, M., & Satoh, N. (2019) · Evolutionary Applications · doi:10.1111/eva.12905 · Cited by 35
“The appearance of this land mass severed the genetic connection between Indian and Pacific marine populations with long-lived pelagic larvae, such as starfish and reef fish species (Benzie, 1999; Gaither et al., 2011).”
Background
The evolutionary history of the goby Elacatinus puncticulatus in the tropical eastern pacific: Effects of habitat discontinuities and local environmental variability
Sandoval-Huerta, E. R., Beltrán‐López, R. G., Pedraza-Marrón, C. D. R., Paz-Velásquez, M. A., Angulo, A., Robertson, D. R., Espinoza, E., & Domínguez‐Domínguez, O. (2018) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2018.10.020 · Cited by 33
Coming out of the starting blocks: extended lag time rearranges genetic diversity in introduced marine fishes of Hawai‘i
Gaither, M. R., Toonen, R. J., & Bowen, B. W. (2012) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2012.1481 · Cited by 33
Self-citation
Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean
Wepfer, P. H., Nakajima, Y., Sutthacheep, M., Radice, V. Z., Richards, Z. T., Ang, P. O., Terraneo, T. I., Sudek, M., Fujimura, A. G., Toonen, R. J., et al. (2020) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2020.106905 · Cited by 33
New insight on population genetic connectivity of widespread amphidromous prawn Macrobrachium lar (Fabricius, 1798) (Crustacea: Decapoda: Palaemonidae)
Castelin, M., Feutry, P., Hautecœur, M., Marquet, G., Wowor, D., Zimmermann, G., & Keith, P. (2013) · Marine Biology · doi:10.1007/s00227-013-2191-y · Cited by 32
“…separating biogeographical provinces can sporadically shape species distributions and intraspecific genetic structure over time, mainly acting on species displaying dispersal potential through the marine environment (e.g., Planes and Fauvelot 2002; Gaither et al. 2010, 2011; Lord et al. 2012).”
Background
Population genetic structure of blue-spotted maskray Neotrygon kuhlii and two other Indo-West Pacific stingray species (Myliobatiformes: Dasyatidae), inferred from size-polymorphic intron markers
Borsa, P., Arlyza, I. S., Laporte, M., & Berrebi, P. (2012) · Journal of Experimental Marine Biology and Ecology · doi:10.1016/j.jembe.2012.09.010 · Cited by 31
“…12 N Atlantic 5 140 0.012 (0.037) McCusker and Bentzen (2010) Cephalopholis argus Peacock grouper introns 2 Indo-West Pacific 18 970 0.089 (0.496) Gaither et al. (2011) Decapterus macrosoma Round scad mackerel intron 1 Indo-Malay archipelago 3 490 0.005 (0.100) Borsa (2003) Decapterus russelli…”
Influential
Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean
Coleman, R. R., Eble, J. A., DiBattista, J. D., Rocha, L. A., Randall, J. E., Berumen, M. L., & Bowen, B. W. (2016) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2016.04.005 · Cited by 30
Self-citation
Geography and life history traits account for the accumulation of cryptic diversity among Indo-West Pacific coral reef fishes
Hubert, N., Dettaı̈, A., Pruvost, P., Cruaud, C., Kulbicki, M., Myers, R.-F., & Borsa, P. (2017) · Marine Ecology Progress Series · doi:10.3354/meps12316 · Cited by 29
“…results have direct implications for the understanding of the evolutionary dynamics at play in coral reef fishes, particularly in a context of divergent interpretations about the origin of biodiversity patterns (Mora et al. 2003, Hubert et al. 2012, Gaither & Rocha 2013, Tornabene et al. 2015).”
Background
Hybridisation among coral reef fishes at Christmas Island and the Cocos (Keeling) Islands
Hobbs, J., & Allen, G. R. (2014) · eSpace (Curtin University) · doi:10.5281/zenodo.20249681 · Cited by 28
Phylogeography of the humbug damselfish,Dascyllus aruanus(Linnaeus, 1758): evidence of Indo-Pacific vicariance and genetic differentiation of peripheral populations
Liu, S. V., Chang, F.-T., Borsa, P., Chen, W., & Dai, C. (2014) · Biological Journal of the Linnean Society · doi:10.1111/bij.12378 · Cited by 25
Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode
Ma, K. Y., van Herwerden, L., Newman, S. J., Berumen, M. L., Choat, J. H., Chu, K. H., & de Mitcheson, Y. S. (2018) · BMC Evolutionary Biology · doi:10.1186/s12862-018-1284-0 · Cited by 30
“In fact, such patterns of extensive population connectivity across the wide range of the WIP with isolation at the eastern margin of the Pacific range is frequently detected in reef fishes, such as the peacock grouper [75], the brown surgeonfish [80], the bluestriped snapper [79], and the flame angelfish [81].”
BackgroundSelf-citation
Latitude‐wide genetic patterns reveal historical effects and contrasting patterns of turnover and nestedness at the range peripheries of a tropical marine fish
Liggins, L., Booth, D. J., Figueira, W. F., Treml, E. A., Tonk, L., Ridgway, T. M., Harris, D. A., & Riginos, C. (2015) · Ecography · doi:10.1111/ecog.01398 · Cited by 27
Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo‐Pacific
Gaboriau, T., Leprieur, F., Mouillot, D., & Hubert, N. (2017) · Ecography · doi:10.1111/ecog.02589 · Cited by 24
Cryptic lineage differentiation among Indo-Pacific bottlenose dolphins (Tursiops aduncus) in the northwest Indian Ocean
Gray, H. W. I., Nishida, S., Welch, A. J., Moura, A. E., Tanabe, S., Kiani, M. S., Culloch, R. M., Möller, L. M., Natoli, A., Ponnampalam, L. S., et al. (2017) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2017.12.027 · Cited by 26
“reef fish (Bay et al., 2004; Gaither et al., 2011; Hubert et al., 2012), gastropods (Crandall et al.”
Background
Comparative phylogeography of reef fishes indicates seamounts as stepping stones for dispersal and diversification
Simon, T., Pinheiro, H. T., Santos, S., Macieira, R. M., Ferreira, Y. S. S., Bernardi, G., Rocha, L. A., Floeter, S. R., Ferreira, C. E. L., & Joyeux, J. (2021) · Coral Reefs · doi:10.1007/s00338-021-02178-8 · Cited by 26
Self-citation
Long‐term panmixia in a cosmopolitan I ndo‐ P acific coral reef fish and a nebulous genetic boundary with its broadly sympatric sister species
Horne, J. B., & van Herwerden, L. (2013) · Journal of Evolutionary Biology · doi:10.1111/jeb.12092 · Cited by 26
Freshwater neritids (Mollusca: Gastropoda) of tropical islands: amphidromy as a life cycle, a review
Abdou, A., Keith, P., & Galzin, R. (2015) · Revue d Écologie (La Terre et La Vie) · doi:10.3406/revec.2015.1799 · Cited by 26
“These barriers mainly act on species displaying dispersal potential through the marine environment as larvae, juveniles or adults (Gaither et al., 2010, 2011).”
Background
Limited connectivity and a phylogeographic break characterize populations of the pink anemonefish, A mphiprion perideraion, in the I ndo‐ M alay A rchipelago: inferences from a mitochondrial and microsatellite loci
Dohna, T. A., Timm, J., Hamid, L., & Kochzius, M. (2015) · Ecology and Evolution · doi:10.1002/ece3.1455 · Cited by 25
Evaluating the drivers of Indo‐Pacific biodiversity: speciation and dispersal of sea snakes (Elapidae: Hydrophiinae)
Ukuwela, K. D. B., Lee, M. S. Y., Rasmussen, A. R., de Silva, A., Mumpuni, Fry, B. G., Ghezellou, P., Rezaie‐Atagholipour, M., & Sanders, K. L. (2015) · Journal of Biogeography · doi:10.1111/jbi.12636 · Cited by 26
Phylogeography of the neon damselfish Pomacentrus coelestis indicates a cryptic species and different species origins in the West Pacific Ocean
Liu, S., Dai, C., Allen, G., & Erdmann, M. (2012) · Marine Ecology Progress Series · doi:10.3354/meps09648 · Cited by 24
Integrative approach revises the frequently misidentified species of Sardinella (Clupeidae) of the Indo‐West Pacific Ocean
Stern, N., Rinkevich, B., & Goren, M. (2016) · Journal of Fish Biology · doi:10.1111/jfb.13114 · Cited by 23
Land masses and oceanic currents drive population structure of Heritiera littoralis, a widespread mangrove in the Indo‐West Pacific
Banerjee, A. K., Guo, W., Qiao, S., Li, W., Xing, F., Lin, Y., Hou, Z., Li, S., Liu, Y., & Huang, Y. (2020) · Ecology and Evolution · doi:10.1002/ece3.6460 · Cited by 23
“…literatures which identified Pleistocene glacial vicariance as one of the important phylogeographic forces shaping the current distribution pattern of many mangroves (e.g., Duke et al., 2002; Urashi et al., 2013; Yang et al., 2017) and other marine species (e.g., Gaither et al., 2011) in the IWP.”
Conservation units and historical matrilineal structure in the tequila bat (Leptonycteris yerbabuenae)
Menchaca, A., Arteaga, M. C., Medellín, R. A., & Jones, G. (2020) · Global Ecology and Conservation · doi:10.1016/j.gecco.2020.e01164 · Cited by 23
Phylogeography of Eleotris fusca (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean
Mennesson, M. I., Bonillo, C., Feunteun, É., & Keith, P. (2018) · Conservation Genetics · doi:10.1007/s10592-018-1063-x · Cited by 21
Green turtles (Chelonia mydas) of the north‐western Arabian Gulf, Kuwait: the need for conservation
Al‐Mohanna, S. Y., Al-Zaidan, A. S. Y., & George, P. (2013) · Aquatic Conservation Marine and Freshwater Ecosystems · doi:10.1002/aqc.2371 · Cited by 20
Mitochondrial DNA variation reveals distinct lineages in Penaeus semisulcatus (Decapoda, Penaeidae) from the Indo‐West Pacific Ocean
Alam, M. M. M., de Croos, M. D. S. T., & Pálsson, S. (2016) · Marine Ecology · doi:10.1111/maec.12406 · Cited by 19
Revisiting the “Centre Hypotheses” of the Indo‐West Pacific: Idiosyncratic genetic diversity of nine reef species offers weak support for the Coral Triangle as a centre of genetic biodiversity
Matias, A. M. A., & Riginos, C. (2018) · Journal of Biogeography · doi:10.1111/jbi.13376 · Cited by 19
Is the Great Barracuda (Sphyraena barracuda) a reef fish or a pelagic fish? The phylogeographic perspective
Daly‐Engel, T. S., Randall, J. E., & Bowen, B. W. (2012) · Marine Biology · doi:10.1007/s00227-012-1878-9 · Cited by 19
Self-citation
Genetic diversity and novel lineages in the cosmopolitan copepod Pleuromamma abdominalis in the Southeast Pacific
González, C. E., Goetze, E., Escribano, R., Ulloa, O., & Victoriano, P. F. (2020) · Scientific Reports · doi:10.1038/s41598-019-56935-5 · Cited by 18
Deep‐sea squat lobster biogeography (Munidopsidae: Leiogalathea) unveils Tethyan vicariance and evolutionary patterns shared by shallow‐water relatives
Rodríguez‐Flores, P. C., Buckley, D., Macpherson, E., Corbari, L., & Machordom, A. (2020) · Zoologica Scripta · doi:10.1111/zsc.12414 · Cited by 18
“Moreover, geographic isolation due to drastic changes in sea level (for instance, after the climatic changes in the Late Pleistocene) could have had a greater impact on reef fauna (Gaither et al., 2011) than on deep-sea fauna, in which processes related to water chemistry, temperature, nutrients and dispersal method m…”
Background
Preliminary analyses reveal strong genetic structure in populations ofLeucothoe vulgaris(Crustacea: Amphipoda: Leucothoidae) from Okinawa, Japan
White, K. N., Reimer, J. D., & Lorion, J. (2015) · Systematics and Biodiversity · doi:10.1080/14772000.2015.1078856 · Cited by 18
Mitochondrial DNA diversity of mud crab Scylla olivacea (Portunidae) in Peninsular Malaysia: a preliminary assessment
Rosly, H. A.-A. M., Nor, S. A. M., Yahya, K., & Naim, D. M. (2013) · Molecular Biology Reports · doi:10.1007/s11033-013-2755-4 · Cited by 18
Genetic diversity and population structure of wild and domesticated black tiger shrimp (Penaeus monodon) broodstocks in the Indo-Pacific regions using consolidated mtDNA and microsatellite markers
Wong, L. L., Chun, L. C., Deris, Z. M., Zainudin, A. A., Ikhwanuddin, M., Iehata, S., Rahman, M. M., & Asaduzzaman, M. (2021) · Gene Reports · doi:10.1016/j.genrep.2021.101047 · Cited by 17
Mitogenomic variation of Bangladesh Penaeus monodon (Decapoda, Panaeidae) and reassessment of its phylogeography in the Indo-West Pacific region
Alam, M. M. M., Westfall, K. M., & Pálsson, S. (2015) · Hydrobiologia · doi:10.1007/s10750-015-2381-3 · Cited by 17
“Several marine species in the Indo-West Pacific region are characterized by distinct eastern and western genetic lineages (Gaither et al., 2001; Keyse et al., 2014), including P. monodon (Benzie et al., 2002) and Fenneropenaeus indicus (Milne-Edwards, 1837; Alam et al., 2015).”
Background
Reef Fish Dispersal in the Hawaiian Archipelago: Comparative Phylogeography of Three Endemic Damselfishes
Tenggardjaja, K. A., Bowen, B. W., & Bernardi, G. (2016) · Journal of Marine Biology · doi:10.1155/2016/3251814 · Cited by 17
“In contrast, the widespread grouper Cephalopholis argus showed no population structure from the central Pacific (Line Islands) to northeastern Australia, a distance of about 8000 km [63].”
BackgroundSelf-citation
Genetic diversity, population structure and historical demography of the two-spined yellowtail stargazer (Uranoscopus cognatus)
Yusoff, N. I. S. M., Jaafar, T. N. A. M., Vilasri, V., Nor, S. A. M., Seah, Y. G., Habib, A., Wong, L. L., Danish‐Daniel, M., Sung, Y. Y., Mazlan, A. G., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-92905-6 · Cited by 16
Mitogenomic Characterization and Phylogenetic Placement of African Hind, Cephalopholis taeniops: Shedding Light on the Evolution of Groupers (Serranidae: Epinephelinae)
Kundu, S., Kang, H., Kim, A., Lee, S. R., Kim, E.-B., Amin, M. H. F., Andriyono, S., Kim, H., & Kang, K. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25031822 · Cited by 16
“…species have primarily addressed aspects such as physiology and reproductive life history [18,19], ge-netic connectivity, phylogeography, evolutionary implications through Pleistocene isolation [20,21], and the assembly of chromosome-level genomes alongside transcriptome comparisons [22].”
Background
Chloroplast DNA phylogeography of the Holly mangrove Acanthus ilicifolius in the Indo-West Pacific
Guo, W., Banerjee, A. K., Ng, W. L., Yuan, Y., Li, W., & Huang, Y. (2020) · Hydrobiologia · doi:10.1007/s10750-020-04372-1 · Cited by 16
“Similar implications have been made in studies on marine fauna in the region (Benzie, 1999; Barber et al., 2000; Gaither et al., 2011).”
Background
British Indian Ocean Territory (the Chagos Archipelago): Setting, Connections and the Marine Protected Area
Sheppard, C. R. C., Bowen, B. W., Chen, A. C., Craig, M. T., Eble, J. A., FitzSimmons, N. N., Gan, C.-H., Gaither, M. R., Gollock, M. J., Keshavmurthy, S., et al. (2013) · Coral reefs of the world · doi:10.1007/978-94-007-5965-7_17 · Cited by 15
Self-citation
Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity
Swart, B., der Merwe, A. E. B., Kerwath, S., & Roodt‐Wilding, R. (2016) · African Journal of Marine Science · doi:10.2989/1814232x.2016.1238410 · Cited by 15
“…and dynamic pattern of population colonisation and expansion within and between oceans and ocean basins (e.g. Pacific Sierra mackerel Scomberomorus sierra [López et al. 2010]; dolphinfish Coryphaena hippurus [Díaz-Jaimes et al. 2010]; peacock grouper Cephalopholus argus [Gaither et al. 2011]).”
Background
The presence of a cryptic barrier in the West Pacific Ocean suggests the effect of glacial climate changes on a widespread sea‐dispersed plant, Vigna marina (Fabaceae)
Yamamoto, T., Tsuda, Y., Takayama, K., Nagashima, R., Tateishi, Y., & Kajita, T. (2019) · Ecology and Evolution · doi:10.1002/ece3.5099 · Cited by 15
“…patterns of phylogeographic structure and genetic diversity in sev‐ eral mangroves (Duke et al., 2002; Huang et al., 2012; Urashi et al., 2013) and other marine species (Alfaro, Karns, Voris, Abernathy, & Sellins, 2004; Gaither et al., 2011) distributed in the Indo‐West Pacific (IWP) region.”
Background
Phylogeography of Blue Corals (Genus Heliopora) Across the Indo-West Pacific
Taninaka, H., Maggioni, D., Seveso, D., Huang, D., Townsend, A., Richards, Z. T., Tang, S., Wada, N., Kikuchi, T., Yuasa, H., et al. (2021) · Frontiers in Marine Science · doi:10.3389/fmars.2021.714662 · Cited by 16
Chromosome-Level Genome Assembly and Transcriptome Comparison Analysis of Cephalopholis sonnerati and Its Related Grouper Species
Xie, Z., Wang, D., Jiang, S., Peng, C. Y., Wang, Q., Huang, C., Li, S., Lin, H., & Zhang, Y. (2022) · Biology · doi:10.3390/biology11071053 · Cited by 14
“Previous studies of the genus Cephalopholis have focused on fishery management, species conservation [10], behavioral biology [4], nutritional biology [11], and phylogeography [12].”
Background
Demographic histories shape population genomics of the common coral grouper (Plectropomus leopardus)
Payet, S. D., Pratchett, M. S., Saenz‐Agudelo, P., Berumen, M. L., DiBattista, J. D., & Harrison, H. B. (2022) · Evolutionary Applications · doi:10.1111/eva.13450 · Cited by 14
“…glacial periods have modified the distribution of shallow coral reef habitat over the last several hundred thousand years, leading to the formation and regression of physical barriers and periods of isolation often followed by secondary contact (e.g., Gaither et al., 2011; Rocha et al., 2007).”
Background
Sorting the wheat from the chaff: a review of BINs associated with groupers of Vietnam and the implications for species identification from DNA barcoding
Durand, J.-D., Pham, H. M., Tran, T. T. V., Hoang, H. D., & Vo, Q. V. (2020) · Marine Biodiversity · doi:10.1007/s12526-020-01051-1 · Cited by 14
Genomic and morphological evidence of distinct populations in the endemic common (weedy) seadragon Phyllopteryx taeniolatus (Syngnathidae) along the east coast of Australia
Klanten, O. S., Gaither, M. R., Greaves, S. E., Mills, K., O’Keeffe, K., Turnbull, J., McKinnon, R., & Booth, D. J. (2020) · PLoS ONE · doi:10.1371/journal.pone.0243446 · Cited by 14
Self-citation
Round herring (genus Etrumeus) contain distinct evolutionary lineages coincident with a biogeographic barrier along Australia’s southern temperate coastline
DiBattista, J. D., Randall, J. E., Newman, S. J., & Bowen, B. W. (2014) · Marine Biology · doi:10.1007/s00227-014-2516-5 · Cited by 14
Self-citation
Hybridisation among groupers (genus Cephalopholis) at the eastern Indian Ocean suture zone: taxonomic and evolutionary implications
Payet, S. D., Hobbs, J., DiBattista, J. D., Newman, S. J., Sinclair‐Taylor, T. H., Berumen, M. L., & McIlwain, J. L. (2016) · Coral Reefs · doi:10.1007/s00338-016-1482-4 · Cited by 14
“…following secondary contact at the Cocos Islands and Christmas Island may have led to introgression and ‘‘mixing’’ of genes beyond the hybrid zone, as reported in other reef fishes (McMillan et al. 1999; Gaither et al. 2011), albeit not at the same spatial scale described here (i.e., 9000 km).”
BackgroundSelf-citation
High intra-ocean, but limited inter-ocean genetic connectivity in populations of the deep-water oblique-banded snapper Pristipomoides zonatus (Pisces: Lutjanidae)
Kennington, W. J., Keron, P. W., Harvey, E. S., Wakefield, C. B., Williams, A. J., Halafihi, T., & Newman, S. J. (2017) · Fisheries Research · doi:10.1016/j.fishres.2017.04.015 · Cited by 14
Self-citation
How the Central American Seaway and an Ancient Northern Passage Affected Flatfish Diversification
Byrne, L., Chapleau, F., & Aris‐Brosou, S. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy104 · Cited by 14
Genomic signatures of host‐associated divergence and adaptation in a coral‐eating snail, Coralliophila violacea (Kiener, 1836)
Simmonds, S. E., Fritts-Penniman, A. L., Cheng, S. H., Mahardika, G. N., & Barber, P. H. (2020) · Ecology and Evolution · doi:10.1002/ece3.5977 · Cited by 14
“…of marine biodiversity, there is a large and diverse literature on the processes shaping the Coral Triangle (Barber, Erdmann, & Palumbi, 2006; Bowen et al., 2013; Carpenter et al., 2011; Gaither et al., 2011; Hoeksema, 2007; Kochzius & Nuryanto, 2008; Tornabene, Valdez, Erdmann, & Pezold, 2015).”
Background
Evolutionary history of the reef fishAnisotremus interruptus(Perciformes: Haemulidae) throughout the Tropical Eastern Pacific
Palmerín‐Serrano, P. N., Tavera, J. J., Espinoza, E., Angulo, A., Martínez‐Gómez, J. E., González‐Acosta, A. F., & Domínguez‐Domínguez, O. (2020) · Journal of Zoological Systematics & Evolutionary Research · doi:10.1111/jzs.12392 · Cited by 14

Authors: Gaither, M. R., Bowen, B. W., Bordenave, T.-R., Rocha, L. A., Newman, S. J., Gomez, J. A., van Herwerden, L., & Craig, M. T.
Affiliations: University of Hawaii System (US)
University of Hawaiʻi at Mānoa (US)
California Academy of Sciences (US)
Government of Western Australia (AU)
James Cook University (AU)
University of Puerto Rico-Mayaguez (PR)
Corresponding author: Gaither, Michelle R
ORCID: Gaither, Michelle R
Bowen, Brian W
Rocha, Luiz A
Newman, Stephen J
van Herwerden, Lynne
Craig, Matthew T
Venue: BMC Evolutionary Biology
Publisher: Springer Science and Business Media LLC
Published: 2011-07-01
Volume: 11
Issue: 1
Pages: 189-189
ISSN: 1471-2148 (ISSN-L)
DOI: 10.1186/1471-2148-11-189
PMC: PMC3145601
OpenAlex: W1989413030
Cited by: 191
References: 110
Citations by year: 2026: 12 · 2025: 12 · 2024: 11 · 2023: 5 · 2022: 11 · 2021: 13 · 2020: 15 · 2019: 9 · 2018: 14 · 2017: 8 · 2016: 16 · 2015: 14 · 2014: 12 · 2013: 17 · 2012: 17
FWCI: 9.98
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by
www.springer.com/tdm (unspecified)
Locations: BMC Evolutionary Biology (publishedVersion, cc-by)
Europe PMC (PubMed Central) (publishedVersion, cc-by)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
ResearchOnline at James Cook University (James Cook University) (submittedVersion)
DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
eSpace (Curtin University) (submittedVersion)
Funders: National Science Foundation (2005-008/66882, 0554657, OCE#09‐29031, 8208-07, 0929031, 0453167)
U.S. Department of Commerce
National Geographic Society (0453167, 0929031, 8208-07)
Nature Conservancy
National Oceanic and Atmospheric Administration (09-29031, 2005-008/66882, OCE-0929031, 0453167, NA09OAR4170060)
U.S. Fish and Wildlife Service
Hawai'i Sea Grant, University of Hawai'i (NA09OAR4170060, 2005-008/66882)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
Physical Sciences › Environmental Science › Ecology › Coral and Marine Ecosystems Studies
Life Sciences › Agricultural and Biological Sciences › Aquatic Science › Fish Biology and Ecology Studies
Keywords: Cephalopholis argus, phylogeography, Pleistocene isolation, Coral Triangle, reef fish, population structure, isolation by distance, population growth, introgression, center of origin, Epinephelidae, cytochrome b, nuclear introns
MeSH terms: Animals, Bass, DNA, Mitochondrial, Molecular Sequence Data, Pacific Ocean, Phylogeny, Evolution, Molecular, Indian Ocean, Animal Migration, Fish Proteins, Phylogeography

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Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle

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