The DOI matches its Crossref record; 137 of the 141 references it cites were found in a registry or an index.
The origin and early evolution of eukaryotes in the light of phylogenomics
Open accessAbstract
Phylogenomics of eukaryote supergroups suggest a highly complex last common ancestor of eukaryotes and a key role of mitochondrial endosymbiosis in the origin of eukaryotes.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Complexity can also occur within cells; a major event in the evolution of eukaryotes was when organisms capable of engulfing other organisms acquired mitochondria (permitting aerobic respiration for energy) and chloroplasts (permitting oxygenic photosynthesis) (Koonin, 2010).”
From The Astrobiology Primer v2.0 (2016) · cites this paper as Koonin, 2010
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Hershko, A., & Ciechanover, A. (1998) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.67.1.425 · Cited by 8,840
Gray, M. W., Burger, G., & Lang, B. F. (1999) · Science · doi:10.1126/science.283.5407.1476 · Cited by 1,765
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
Adl, S., Simpson, A., Farmer, M. A., Andersen, R., Anderson, O., Barta, J. R., Bowser, S., Brugerolle, G., Fensome, R., Fredericq, S., et al. (2005) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00053.x · Cited by 1,749
Phylogenomics and the reconstruction of the tree of life
Delsuc, F., Brinkmann, H., & Philippe, H. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1603 · Cited by 1,264
A kingdom-level phylogeny of eukaryotes based on combined protein data.
Baldauf, S., Roger, A., Wenk-Siefert, I., & Doolittle, W. (2000) · Science · doi:10.1126/science.290.5493.972 · Cited by 1,243
Protein Tyrosine Kinase Structure and Function
Hubbard, S. R., & Till, J. H. (2000) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.69.1.373 · Cited by 1,176
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
Koonin, E. V., Fedorova, N. D., Jackson, J. D., Jacobs, A. R., Krylov, D. M., Makarova, K. S., Mazumder, R., Mekhedov, S., Nikolskaya, A. N., Rao, B. S., et al. (2004) · Genome biology · doi:10.1186/gb-2004-5-2-r7 · Cited by 1,100
Self-citationThe Age of Crosstalk: Phosphorylation, Ubiquitination, and Beyond
Hunter, T. R. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.11.019 · Cited by 970
Ubiquitin-binding domains — from structures to functions
Đikić, I., Wakatsuki, S., & Walters, K. J. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2767 · Cited by 903
Research works printed but not linked: 1
- Entrez Genome http://www.ncbi.nlm.nih.gov/sites/genome
Cited by
Sorted by citations
Complex archaea that bridge the gap between prokaryotes and eukaryotes
Spang, A., Saw, J. H., Jørgensen, S. L., Zaremba-Niedzwiedzka, K., Martijn, J., Lind, A. E., van Eijk, R., Schleper, C., Guy, L., & Ettema, T. J. G. (2015) · Nature · doi:10.1038/nature14447 · Cited by 1,324
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
Müller, M., Mentel, M., van Hellemond, J. J., Henze, K., Woehle, C., Gould, S. B., Yu, R.-Y., van der Giezen, M., Tielens, A. G. M., & Martin, W. F. (2012) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.05024-11 · Cited by 838
Endosymbiosis and Eukaryotic Cell Evolution
Archibald, J. M. (2015) · Current Biology · doi:10.1016/j.cub.2015.07.055 · Cited by 654
Gray, M. W. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a011403 · Cited by 639
Archaea and the origin of eukaryotes
Eme, L., Spang, A., Lombard, J., Stairs, C. W., & Ettema, T. J. G. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.133 · Cited by 575
The dynamic roles of intracellular lipid droplets: from archaea to mammals
Murphy, D. J. (2011) · PROTOPLASMA · doi:10.1007/s00709-011-0329-7 · Cited by 410
Evolution and functional cross‐talk of protein post‐translational modifications
Beltrão, P., Bork, P., Krogan, N. J., & van Noort, V. (2013) · Molecular Systems Biology · doi:10.1002/msb.201304521 · Cited by 379
The archaeal ‘TACK’ superphylum and the origin of eukaryotes
Guy, L., & Ettema, T. J. G. (2011) · Trends in Microbiology · doi:10.1016/j.tim.2011.09.002 · Cited by 372
The evolution of the cytoskeleton
Wickstead, B., & Keith Gull, B. (2011) · The Journal of Cell Biology · doi:10.1083/jcb.201102065 · Cited by 318
Genome reduction as the dominant mode of evolution
Wolf, Y. I., & Koonin, E. V. (2013) · BioEssays · doi:10.1002/bies.201300037 · Cited by 327
Self-citationSex is a ubiquitous, ancient, and inherent attribute of eukaryotic life
Speijer, D., Lukeš, J., & Eliáš, M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1501725112 · Cited by 312
On the Age of Eukaryotes: Evaluating Evidence from Fossils and Molecular Clocks
Eme, L., Sharpe, S. C., Brown, M. W., & Roger, A. J. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016139 · Cited by 287
Ball, S. G., Colleoni, C., Cenci, U., Raj, J. N., & Tirtiaux, C. (2011) · Journal of Experimental Botany · doi:10.1093/jxb/erq411 · Cited by 281
“Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses
Colson, P., de Lamballerie, X. N., Yutin, N., Sassan Asgari, B., Bigot, Y., Bideshi, D. K., Cheng, X.-W., Federici, B. A., Etten, J. L. V., Koonin, E. V., et al. (2013) · Archives of Virology · doi:10.1007/s00705-013-1768-6 · Cited by 265
Self-citationLate acquisition of mitochondria by a host with chimaeric prokaryotic ancestry
Pittis, A. A., & Gabaldón, T. (2016) · Nature · doi:10.1038/nature16941 · Cited by 259
Virus World as an Evolutionary Network of Viruses and Capsidless Selfish Elements
Koonin, E. V., & Dolja, V. V. (2014) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00049-13 · Cited by 253
Self-citationProbing the evolution, ecology and physiology of marine protists using transcriptomics
Caron, D. A., Alexander, H., Allen, A. E., Archibald, J. M., Armbrust, E. V., Bachy, C., Bell, C. J., Bharti, A. K., Dyhrman, S. T., Guida, S. M., et al. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.160 · Cited by 233
Early evolution of the Eukaryota
Butterfield, N. J. F. (2014) · Palaeontology · doi:10.1111/pala.12139 · Cited by 225
Dolja, V. V., & Koonin, E. V. (2017) · Virus Research · doi:10.1016/j.virusres.2017.10.020 · Cited by 219
Self-citationUntangling the evolution of Rab G proteins: implications of a comprehensive genomic analysis
Kloepper, T. H., Kienle, N., Fasshauer, D., & Munro, S. (2012) · BMC Biology · doi:10.1186/1741-7007-10-71 · Cited by 200
Lindquist, S., & Kelly, J. W. (2011) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a004507 · Cited by 192
Bacterial proteins pinpoint a single eukaryotic root
Derelle, R., Torruella, G., Klimeš, V., Brinkmann, H., Kim, E., Vlček, Č., Lang, B. F., & Eliáš, M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1420657112 · Cited by 192
From complete genome sequence to ‘complete’ understanding?
Galperin, M. Y., & Koonin, E. V. (2010) · Trends in biotechnology · doi:10.1016/j.tibtech.2010.05.006 · Cited by 183
Self-citationHorizontal gene transfer in eukaryotes: The weak‐link model
Huang, J. (2013) · BioEssays · doi:10.1002/bies.201300007 · Cited by 171
Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade
Thrash, J. C., Boyd, A., Huggett, M. J., Grote, J., Carini, P., Yoder, R. J., Robbertse, B., Spatafora, J. W., Rappé, M. S., & Giovannoni, S. J. (2011) · Scientific Reports · doi:10.1038/srep00013 · Cited by 174
Csürös, M., Rogozin, I. B., & Koonin, E. V. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002150 · Cited by 168
Self-citationEvolutionary Diversity of the Mitochondrial Calcium Uniporter
Bick, A. G., Calvo, S. E., & Mootha, V. K. (2012) · Science · doi:10.1126/science.1214977 · Cited by 161
Malina, C., Larsson, C., & Nielsen, J. (2018) · FEMS Yeast Research · doi:10.1093/femsyr/foy040 · Cited by 166
The Physiology of Phagocytosis in the Context of Mitochondrial Origin
Martin, W. F., Tielens, A. G. M., Mentel, M., Garg, S. G., & Gould, S. B. (2017) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00008-17 · Cited by 157
Wolbachia Associations with Insects: Winning or Losing Against a Master Manipulator
Correa, C. C., & Ballard, J. W. O. (2016) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2015.00153 · Cited by 150
Lasda, E. L., & Blumenthal, T. (2011) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.71 · Cited by 146
The Repatterning of Eukaryotic Genomes by Random Genetic Drift
Lynch, M., Bobay, L., Catania, F., Goût, J.-F., & Rho, M. (2011) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-082410-101412 · Cited by 148
Energetics and genetics across the prokaryote-eukaryote divide
Lane, N. J. (2011) · Biology Direct · doi:10.1186/1745-6150-6-35 · Cited by 144
Domagal-Goldman, S. D., Wright, K. E., Domagal-Goldman, S. D., Wright, K. E., Adamala, K., Arina de la Rubia, L., Bond, J., Dartnell, L. R., Goldman, A. D., Lynch, K., et al. (2016) · Astrobiology · doi:10.1089/ast.2015.1460 · Cited by 136
“Complexity can also occur within cells; a major event in the evolution of eukaryotes was when organisms capable of engulfing other organisms acquired mitochondria (permitting aerobic respiration for energy) and chloroplasts (permitting oxygenic photosynthesis) (Koonin, 2010).”
Rooting the Eukaryotic Tree with Mitochondrial and Bacterial Proteins
Derelle, R., & Lang, B. F. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr295 · Cited by 139
Bioenergetic Constraints on the Evolution of Complex LifePreprint
Lane, N. J. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a015982 · Cited by 136
Origin and Evolution of Plastids and Photosynthesis in EukaryotesPreprint
McFadden, G. I. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016105 · Cited by 139
Early Microbial Evolution: The Age of Anaerobes
Martin, W. F., & Sousa, F. L. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018127 · Cited by 129
Three-Dimensional Reconstruction of Bacteria with a Complex Endomembrane System
Santarella‐Mellwig, R., Pruggnaller, S., Roos, N., Mattaj, I. W., & Devos, D. P. (2013) · PLoS Biology · doi:10.1371/journal.pbio.1001565 · Cited by 127
From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell
Martijn, J., & Ettema, T. J. G. (2013) · Biochemical Society Transactions · doi:10.1042/bst20120292 · Cited by 126
Basu, S., Patil, S., Mapleson, D., Russo, M. T., Vitale, L. A., Fevola, C., Maumus, F., Casotti, R., Möck, T., Cáccamo, M., et al. (2017) · New Phytologist · doi:10.1111/nph.14557 · Cited by 128
The Quest for a Universal Theory of Life
Cleland, C. E. (2019) · Cambridge University Press eBooks · doi:10.1017/9781139046893 · Cited by 127
Origin and Early Evolution of the Eukaryotic Cell
Gabaldón, T. (2021) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090817-062213 · Cited by 121
Eukaryogenesis, how special really?
Booth, A., & Doolittle, W. F. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1421376112 · Cited by 118
Speijer, D. (2010) · BioEssays · doi:10.1002/bies.201000097 · Cited by 117
Eukaryotic Origins: How and When Was the Mitochondrion Acquired?Preprint
Poole, A. M., & Gribaldo, S. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a015990 · Cited by 119
The Common Ancestor of Archaea and Eukarya Was Not an Archaeon
Forterre, P. (2013) · Archaea · doi:10.1155/2013/372396 · Cited by 119
Baumgarten, S., Bayer, T., Aranda, M., Liew, Y. J., Carr, A. R., Micklem, G., & Voolstra, C. R. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-704 · Cited by 117
Forterre, P. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2010.10.005 · Cited by 110
Can Plant Viruses Cross the Kingdom Border and Be Pathogenic to Humans?
Balique, F., Lecoq, H., Raoult, D., & Colson, P. (2015) · Viruses · doi:10.3390/v7042074 · Cited by 109
Mosaic origin of the eukaryotic kinetochore
Tromer, E. C., van Hooff, J. J. E., Kops, G. J. P. L., & Snel, . (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1821945116 · Cited by 106
Winding paths to simplicity: genome evolution in facultative insect symbionts
Lo, W., Huang, Y., & Kuo, C. (2016) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuw028 · Cited by 107
Highly Conserved Mitochondrial Genomes among Multicellular Red Algae of the Florideophyceae
Yang, E. C., Kim, K. M., Kim, S. Y., Lee, J., Boo, G. H., Lee, J., Nelson, W. A., Yi, G., Schmidt, W. E., Fredericq, S., et al. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv147 · Cited by 99
Origin and Diversification of Eukaryotes
Katz, L. A. (2010) · Annual Review of Microbiology · doi:10.1146/annurev-micro-090110-102808 · Cited by 99
Quéméner, E. D., Brochier‐Armanet, C., Forterre, P., & Gribaldo, S. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2010.10.004 · Cited by 102
Concepts of the last eukaryotic common ancestor
O’Malley, M. A., Leger, M. M., Wideman, J. G., & Ruiz‐Trillo, I. (2019) · Nature Ecology & Evolution · doi:10.1038/s41559-019-0796-3 · Cited by 98
Oxygen, animals and aquatic bioturbation: An updated account
Butterfield, N. J. (2018) · Geobiology · doi:10.1111/gbi.12267 · Cited by 89
Planctomycetes and eukaryotes: A case of analogy not homology
McInerney, J. O., Martin, W. F., Koonin, E. V., Allen, J. F., Galperin, M. Y., Lane, N. J., Archibald, J. M., & Embley, T. M. (2011) · BioEssays · doi:10.1002/bies.201100045 · Cited by 90
Self-citationA meta‐analysis of the strength and nature of cytoplasmic genetic effects
Dobler, R., Rogell, B., Budar, F., & Dowling, D. K. (2014) · Journal of Evolutionary Biology · doi:10.1111/jeb.12468 · Cited by 91
Dissecting genome reduction and trait loss in insect endosymbionts
Latorre, A., & Manzano-Marín, A. (2016) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.13222 · Cited by 90
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution
Grau‐Bové, X., Navarrete, C., Chiva, C., Pribasnig, T., Antó, M., Torruella, G., Galindo, L. J., Lang, B. F., Moreira, D., López‐García, P., et al. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01771-6 · Cited by 87
Phylogenomic Test of the Hypotheses for the Evolutionary Origin of Eukaryotes
Rochette, N. C., Brochier‐Armanet, C., & Gouy, M. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/mst272 · Cited by 84
Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes
Saw, J. H. W., Spang, A., Zaremba-Niedźwiedzka, K., Juzokaite, L., Dodsworth, J. A., Murugapiran, S. K., Colman, D. R., Takacs‐Vesbach, C. D., Hedlund, B. P., Guy, L., et al. (2015) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2014.0328 · Cited by 80
Cyanobacterial nitrogenases: phylogenetic diversity, regulation and functional predictions
Esteves-Ferreira, A. A., Cavalcanti, J. H. F., Vaz, M. G. M. V., de Alvarenga, L. V., Nunes‐Nesi, A., & Araújo, W. L. (2017) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2016-0050 · Cited by 85
The Pre-Endosymbiont Hypothesis: A New Perspective on the Origin and Evolution of MitochondriaPreprint
Gray, M. W. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016097 · Cited by 84
A Briefly Argued Case That Asgard Archaea Are Part of the Eukaryote Tree
Fournier, G. P., & Poole, A. M. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01896 · Cited by 82
Evolutionary defined role of the mitochondrial DNA in fertility, disease and ageing
Otten, A. B. C., & Smeets, H. J. M. (2015) · Human Reproduction Update · doi:10.1093/humupd/dmv024 · Cited by 81
Phylogenomic Reconstruction Indicates Mitochondrial Ancestor Was an Energy Parasite
Wang, Z., & Wu, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0110685 · Cited by 76
From the scala naturae to the symbiogenetic and dynamic tree of life
Kutschera, U. (2011) · Biology Direct · doi:10.1186/1745-6150-6-33 · Cited by 80
Global Patterns of Protein Domain Gain and Loss in Superkingdoms
Nasir, A., Kim, K. M., & Caetano‐Anollés, G. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003452 · Cited by 74
Deciphering the Evolutionary History of Open and Closed Mitosis
Sazer, S., Lynch, M., & Needleman, D. J. (2014) · Current Biology · doi:10.1016/j.cub.2014.10.011 · Cited by 74
A Novel Protein Kinase-Like Domain in a Selenoprotein, Widespread in the Tree of Life
Dudkiewicz, M., Szczepińska, T., Grynberg, M., & Pawłowski, K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032138 · Cited by 75
Evolution of intrinsic disorder in eukaryotic proteins
Ahrens, J. B., Nunez-Castilla, J., & Siltberg-Liberles, J. (2017) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-017-2559-0 · Cited by 72
Chernikova, D., Motamedi, S., Csürös, M., Koonin, E. V., & Rogozin, I. B. (2011) · Biology Direct · doi:10.1186/1745-6150-6-26 · Cited by 72
Self-citationCommon origins and host-dependent diversity of plant and animal viromes
Dolja, V. V., & Koonin, E. V. (2011) · Current Opinion in Virology · doi:10.1016/j.coviro.2011.09.007 · Cited by 71
Self-citationThe Evolution of the Hallmarks of Aging
Lemoine, M. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.693071 · Cited by 76
Losing Complexity: The Role of Simplification in Macroevolution.
O'Malley, M. A., Wideman, J. G., & Ruiz-Trillo, I. (2016) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2016.04.004 · Cited by 64
Serial endosymbiosis or singular event at the origin of eukaryotes?
Lane, N. J. (2017) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2017.04.031 · Cited by 71
Early evolution without a tree of life
Martin, W. F. (2011) · Biology Direct · doi:10.1186/1745-6150-6-36 · Cited by 70
Erives, A. J. (2017) · Epigenetics & Chromatin · doi:10.1186/s13072-017-0162-0 · Cited by 66
The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective
Guy, L., Saw, J. H., & Ettema, T. J. G. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016022 · Cited by 65
Tiengwe, C., Marcello, L., Farr, H., Gadelha, C., Burchmore, R., Barry, J. D., Bell, S. D., & McCulloch, R. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032674 · Cited by 67
Ginger, M. L., Fritz‐Laylin, L. K., Fulton, C., Cande, W. Z., & Dawson, S. C. (2010) · Protist · doi:10.1016/j.protis.2010.09.001 · Cited by 65
Endosymbiosis and its implications for evolutionary theory
O’Malley, M. A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1421389112 · Cited by 69
Andersen, R. A. (2013) · Handbook of Microalgal Culture · doi:10.1002/9781118567166.ch1 · Cited by 62
Keys to eukaryality: Planctomycetes and ancestral evolution of cellular complexity
Fuerst, J. A. (2012) · Frontiers in Microbiology · doi:10.3389/fmicb.2012.00167 · Cited by 61
Jiang, C., Wang, G., Xiong, J., Yang, W., Sun, Z., Feng, J.-M., Warren, A., & Miao, W. (2018) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2018.11.018 · Cited by 61
When integration fails: Prokaryote phylogeny and the tree of life
O’Malley, M. A. (2012) · Studies in History and Philosophy of Science Part C Studies in History and Philosophy of Biological and Biomedical Sciences · doi:10.1016/j.shpsc.2012.10.003 · Cited by 59
Breath-giving cooperation: critical review of origin of mitochondria hypotheses
Zachar, I., & Szathmáry, E. (2017) · Biology Direct · doi:10.1186/s13062-017-0190-5 · Cited by 60
Imhof, S., Zhang, J., Wang, H., Bui, K. H., Nguyen, H. T., Atanasov, I. C., Hui, W. H., Yang, S. K., Zhou, Z. H., & Hill, K. L. (2019) · eLife · doi:10.7554/elife.52058 · Cited by 58
Introduction: Semiotic Scaffolding
Hoffmeyer, J. (2015) · Biosemiotics · doi:10.1007/s12304-015-9236-1 · Cited by 58
Prokaryotic Ubiquitin-Like Protein Modification
Maupin-furlow, J. A. (2014) · Annual Review of Microbiology · doi:10.1146/annurev-micro-091313-103447 · Cited by 57
The Evolution of Algae by Secondary and Tertiary Endosymbiosis
Archibald, J. M. (2012) · Advances in botanical research · doi:10.1016/b978-0-12-391499-6.00003-7 · Cited by 57
Keeling, P. J. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016196 · Cited by 58
Sequence Features of Mitochondrial Transporter Protein Families
Gyimesi, G., & Hediger, M. A. (2020) · Biomolecules · doi:10.3390/biom10121611 · Cited by 56
Bittman, E. L. (2015) · Journal of Biological Rhythms · doi:10.1177/0748730415618297 · Cited by 55
Intracellular Rickettsiales: Insights into manipulators of eukaryotic cells
Renvoisé, A., Merhej, V., Georgiades, K., & Raoult, D. (2011) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2011.05.009 · Cited by 57
The D 1‐ D 2 region of the large subunit ribosomal DNA as barcode for ciliates
Stoeck, T., Przyboś, E., & Dunthorn, M. (2013) · Molecular Ecology Resources · doi:10.1111/1755-0998.12195 · Cited by 53
Relative timing of mitochondrial endosymbiosis and the “pre‐mitochondrial symbioses” hypothesis
Gabaldón, T. (2018) · IUBMB Life · doi:10.1002/iub.1950 · Cited by 56
The evolution of eukaryotic cells from the perspective of peroxisomes
Bolte, K., Rensing, S. A., & Maier, U. (2014) · BioEssays · doi:10.1002/bies.201400151 · Cited by 52
Metadata
- Authors
- Koonin, E. V.
- Affiliations
- National Institutes of Health (US)
- Corresponding author
- Koonin, Eugene V
- ORCID
- Koonin, Eugene V
- Venue
- Genome Biology
- Published
- 2010
- Volume
- 11
- Issue
- 5
- Pages
- 209
- ISSN
- 1465-6906 (ISSN-L)
- PMC
- PMC2898073
- OpenAlex
- W2144889160
- Cited by
- 345
- References
- 141
- Citations by year
- 2026: 10 · 2025: 8 · 2024: 15 · 2023: 7 · 2022: 7 · 2021: 21 · 2020: 13 · 2019: 27 · 2018: 20 · 2017: 26 · 2016: 31 · 2015: 32 · 2014: 35 · 2013: 28 · 2012: 28
- FWCI
- 12.12
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Genome biology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. Department of Health and Human Services
- National Institutes of Health
- U.S. National Library of Medicine
- Topics
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- eukaryotic origin, eukaryotic evolution, last common ancestor, mitochondrial endosymbiosis, phylogenomics, eukaryotic phylogeny
- MeSH terms
- Archaea, Bacteria, Phylogeny, Genomics, Eukaryota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
