CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae
Open accessAbstract
Genome editing tools are important for functional genomics research and biotechnology applications. Recently, the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 (Cas9) system for gene knockout has emerged as the most effective genome-editing tool. It has previously been reported that, in rice plants, knockdown of the Os8N3 gene resulted in enhanced resistance to Xanthomonas oryzae pv. oryzae ( Xoo ), while displaying abnormal pollen development. The CRISPR/Cas9 system was employed to knockout rice Os8N3 , in order to confer enhanced resistance to Xoo . Analysis of the genotypes and edited Os8N3 in T 0 , T 1 , T 2 , and T 3 transgenic rice plants showed that the mutations were transmitted to subsequent generations, and homozygous mutants displayed significantly enhanced resistance to Xoo . Stable transmission of CRISPR/Cas9-mediated Os8N3 gene editing without the transferred DNA (T-DNA) was confirmed by segregation in the T 1 generation. With respect to many investigated agronomic traits including pollen development, there was no significant difference between homozygous mutants and non-transgenic control plants under greenhouse growth conditions. Data from this study indicate that the CRISPR/Cas9-mediated Os8N3 edition can be successfully employed for non-transgenic crop improvements.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Single or multiple gene knockouts have been successfully observed in maize, barley, wheat, and rice.
“Gene knockout is the widely used application of CRISPR/Cas9, and single or multiple gene knockouts have been successfully observed in maize, barley, wheat, and rice (Li et al., 2013;Doll et al., 2019;Kim et al., 2019;Lawrenson and Harwood, 2019;Křenek et al., 2021;Zhang et al., 2021;Karunarathne et al., 2022).”
From Genetic resources and precise gene editing for targeted improvement of barley abiotic stress tolerance (2023) · cites this paper as Kim et al., 2019
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Ma, X., Zhang, Q., Zhu, Q., Liu, W., Chen, Y., Qiu, R., Wang, B., Yang, Z., Li, H., Lin, Y., et al. (2015) · Molecular Plant · doi:10.1016/j.molp.2015.04.007 · Cited by 2,369 · see citing works
A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21
Song, W.-Y., Wang, G., Chen, L.-L., Kim, H.-S., Pi, L.-Y., Holsten, T., Gardner, J., Wang, B., Zhai, W.-X., Zhu, L.-H., et al. (1995) · Science · doi:10.1126/science.270.5243.1804 · Cited by 2,274 · see citing works
Wang, Y., Cheng, X., Shan, Q., Zhang, Y., Liu, J., Gao, C., & Qiu, J.-L. (2014) · Nature Biotechnology · doi:10.1038/nbt.2969 · Cited by 2,072 · see citing works
Sugar transporters for intercellular exchange and nutrition of pathogens
Chen, L., Hou, B., Lalonde, S., Takanaga, H., Hartung, M. L., Qu, X.-Q., Guo, W., Kim, J., Underwood, W. R., Chaudhuri, B., et al. (2010) · Nature · doi:10.1038/nature09606 · Cited by 1,629 · see citing works
Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport
Chen, L., Qu, X.-Q., Hou, B., Sosso, D., Osorio, S., Fernie, A. R., & Frommer, W. B. (2011) · Science · doi:10.1126/science.1213351 · Cited by 1,384 · see citing works
Genetic compensation induced by deleterious mutations but not gene knockdowns
Rossi, A., Kontarakis, Z., Gerri, C., Nolte, H., Hölper, S., Krüger, M., & Stainier, D. Y. R. (2015) · Nature · doi:10.1038/nature14580 · Cited by 1,226 · see citing works
High-efficiency TALEN-based gene editing produces disease-resistant rice
Li, T., Liu, B., Spalding, M. H., Weeks, D. P., & Yang, B. (2012) · Nature Biotechnology · doi:10.1038/nbt.2199 · Cited by 1,149 · see citing works
Efficient genome editing in plants using a CRISPR/Cas system
Feng, Z., Zhang, B., Ding, W., Liu, X., Yang, D., Wei, P., Cao, F., Zhu, S., Zhang, F., Mao, Y., et al. (2013) · Cell Research · doi:10.1038/cr.2013.114 · Cited by 1,070 · see citing works
Wang, F., Wang, C., Liu, P., Lei, C., Hao, W., Gao, Y., Liu, Y., & Zhao, K. (2016) · PLoS ONE · doi:10.1371/journal.pone.0154027 · Cited by 825 · see citing works
Kok, F. O., Shin, M., Ni, C., Gupta, A., Grosse, A. S., van Impel, A., Kirchmaier, B. C., Peterson-Maduro, J., Kourkoulis, G., Male, I., et al. (2014) · Developmental Cell · doi:10.1016/j.devcel.2014.11.018 · Cited by 752 · see citing works
Peng, A., Chen, S., Lei, T., Xu, L., He, Y., Liu, W., Yao, L., & Zou, X. (2017) · Plant Biotechnology Journal · doi:10.1111/pbi.12733 · Cited by 732 · see citing works
Feng, Z., Mao, Y., Xu, N., Zhang, B., Wei, P., Yang, D., Wang, Z., Zhang, Z., Zheng, R., Yang, L., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1400822111 · Cited by 657 · see citing works
Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
Yang, B., Sugio, A., & White, F. F. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604088103 · Cited by 635 · see citing works
Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice
Zhou, H., Liu, B., Weeks, D. P., Spalding, M. H., & Yang, B. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku806 · Cited by 592 · see citing works
Belhaj, K., Chaparro‐Garcia, A., Kamoun, S., & Nekrasov, V. (2013) · Plant Methods · doi:10.1186/1746-4811-9-39 · Cited by 582 · see citing works
Promoter mutations of an essential gene for pollen development result in disease resistance in ricePreprint
Chu, Z., Yuan, M., Yao, J., et al. (2006) · Genes & Development · doi:10.1101/gad.1416306 · Cited by 561 · see citing works
Cas-Designer: a web-based tool for choice of CRISPR-Cas9 target sites
Park, J., Bae, S., & Kim, J. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv537 · Cited by 483 · see citing works
SWEET sugar transporters for phloem transport and pathogen nutrition
Chen, L. (2013) · New Phytologist · doi:10.1111/nph.12445 · Cited by 430 · see citing works
ABP1 Mediates Auxin Inhibition of Clathrin-Dependent Endocytosis in Arabidopsis
Robert, S., Kleine‐Vehn, J., Barbez, E., Sauer, M., Paciorek, T., Baster, P., Vanneste, S., Zhang, J., Simon, S., Čovanová, M., et al. (2010) · Cell · doi:10.1016/j.cell.2010.09.027 · Cited by 419 · see citing works
Engineering of CRISPR/Cas9‐mediated potyvirus resistance in transgene‐free Arabidopsis plants
Pyott, D. E., Sheehan, E., & Molnár, A. (2016) · Molecular Plant Pathology · doi:10.1111/mpp.12417 · Cited by 417 · see citing works
CRISPR knockout screening outperforms shRNA and CRISPRi in identifying essential genes
Evers, B., Jastrzebski, K., Heijmans, J. P. M., Grernrum, W., Beijersbergen, R. L., & Bernards, R. (2016) · Nature Biotechnology · doi:10.1038/nbt.3536 · Cited by 410 · see citing works
Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes
Morgens, D. W., Deans, R. M., Li, A., & Bassik, M. C. (2016) · Nature Biotechnology · doi:10.1038/nbt.3567 · Cited by 384 · see citing works
Targeted mutagenesis in soybean using the CRISPR-Cas9 system
Sun, X., Hu, Z., Chen, R., Jiang, Q., Song, G., Zhang, H., & Xi, Y. (2015) · Scientific Reports · doi:10.1038/srep10342 · Cited by 375 · see citing works
Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development
Gao, Y., Zhang, Y., Zhang, D., Dai, X., Estelle, M. A., & Zhao, Y. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1500365112 · Cited by 339 · see citing works
CRISPR/Cas9-mediated mutagenesis of the RIN locus that regulates tomato fruit ripening
Ito, Y., Nishizawa‐Yokoi, A., Endo, M., Mikami, M., & Toki, S. (2015) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2015.09.117 · Cited by 328 · see citing works
SWEET 11 and 15 as key players in seed filling in rice
Yang, J., Luo, D., Yang, B., Frommer, W. B., & Eom, J. (2018) · New Phytologist · doi:10.1111/nph.15004 · Cited by 313 · see citing works
Liu, W., Xie, X., Ma, X., Li, J., Chen, J., & Liu, Y. (2015) · Molecular Plant · doi:10.1016/j.molp.2015.05.009 · Cited by 290 · see citing works
Yuan, M., Chu, Z., Li, X., Xu, C., & Wang, S. (2010) · The Plant Cell · doi:10.1105/tpc.110.078022 · Cited by 272 · see citing works
Essential Role of Sugar Transporter OsSWEET11 During the Early Stage of Rice Grain Filling
Ma, L., Zhang, D., Miao, Q., et al. (2017) · Plant and Cell Physiology · doi:10.1093/pcp/pcx040 · Cited by 245 · see citing works
Blanvillain‐Baufumé, S., Reschke, M., Solé, M., et al. (2016) · Plant Biotechnology Journal · doi:10.1111/pbi.12613 · Cited by 239 · see citing works
Xu, R., Li, H., Qin, R., Li, J., Qiu, C.-H., Yang, Y.-C., Ma, H., Li, L., Wei, P., & Yang, J.-B. (2015) · Scientific Reports · doi:10.1038/srep11491 · Cited by 227 · see citing works
Gibberellin Regulates Pollen Viability and Pollen Tube Growth in Rice
Chhun, T., Aya, K., Asano, K., et al. (2007) · The Plant Cell · doi:10.1105/tpc.107.054759 · Cited by 205 · see citing works
Römer, P., Recht, S., Strauß, T., et al. (2010) · New Phytologist · doi:10.1111/j.1469-8137.2010.03217.x · Cited by 204 · see citing works
Rice versus Xanthomonas oryzae pv. oryzae: a unique pathosystem
Zhang, H., & Wang, S. (2013) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2013.02.008 · Cited by 172 · see citing works
Braun, N., Wyrzykowska, J., Müller, P., David, K. M., Couch, D., Perrot‐Rechenmann, C., & Fleming, A. J. (2008) · The Plant Cell · doi:10.1105/tpc.108.059048 · Cited by 172 · see citing works
Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1
Chern, M., Canlas, P. E., Fitzgerald, H. A., et al. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02485.x · Cited by 167 · see citing works
Li, G., Jain, R., Chern, M., Pham, N. T., Martin, J., Wei, T., Schackwitz, W., Lipzen, A., Duong, P. Q., Jones, K. C., et al. (2017) · The Plant Cell · doi:10.1105/tpc.17.00154 · Cited by 164 · see citing works
Bai, J., Choi, S. H., Ponciano, G., et al. (2000) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi.2000.13.12.1322 · Cited by 158 · see citing works
Ma, X., Chen, L., Zhu, Q., Chen, Y., & Liu, Y. (2015) · Molecular Plant · doi:10.1016/j.molp.2015.02.012 · Cited by 155 · see citing works
Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules
Chen, X., Grandont, L., Li, H., Hauschild, R., Paque, S., Abuzeineh, A., Bertrand-Rakusova, H., Benková, E., Perrot‐Rechenmann, C., & Friml, J. (2014) · Nature · doi:10.1038/nature13889 · Cited by 138 · see citing works
Engineering Plant Disease Resistance Based on TAL Effectors
Schornack, S., Moscou, M., Ward, E. R., & Horvath, D. M. (2013) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-082712-102255 · Cited by 118 · see citing works
Yuan, M., Chu, Z., Li, X., et al. (2009) · Plant and Cell Physiology · doi:10.1093/pcp/pcp046 · Cited by 112 · see citing works
Transcriptional and phenotypic comparisons of Ppara knockout and siRNA knockdown mice
Souza, A. T. D., Dai, X., Spencer, A. G., Reppen, T. W., Menzie, A. M., Roesch, P. L., He, Y. D., Caguyong, M. J., Bloomer, S., Herweijer, H., et al. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl609 · Cited by 110 · see citing works
MorTAL Kombat: the story of defense against TAL effectors through loss-of-susceptibility
Hutin, M., Pérez‐Quintero, Á. L., López, C. E., & Szurek, B. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.00535 · Cited by 92 · see citing works
Paque, S., Mouille, G., Grandont, L., et al. (2014) · The Plant Cell · doi:10.1105/tpc.113.120048 · Cited by 85 · see citing works
A simple, flexible and high‐throughput cloning system for plant genome editing via CRISPR‐Cas system
Kim, H., Kim, S., Ryu, J., Choi, M. K., Kweon, J., Kang, B., Ahn, H., Bae, S., Kim, J., Kim, J., et al. (2016) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12474 · Cited by 78 · see citing works
Evolution of Transcription Activator-Like Effectors in Xanthomonas oryzae
Erkes, A., Reschke, M., Boch, J., & Grau, J. (2017) · Genome Biology and Evolution · doi:10.1093/gbe/evx108 · Cited by 75 · see citing works
Wang, F., Lin, R., Feng, J., Chen, W., Qiu, D., & Xu, S. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.00108 · Cited by 73 · see citing works
Sun, Y., Li, J., & Xia, L. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.01928 · Cited by 73 · see citing works
Daude, N., Wohlgemuth, S. L., Brown, R. J., Pitstick, R., Gapeshina, H., Yang, J., Carlson, G. A., & Westaway, D. A. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1202130109 · Cited by 69 · see citing works
The prion or the related Shadoo protein is required for early mouse embryogenesis
Young, R. A., Passet, B., Vilotte, M., Cribiu, E.-P., Béringue, V., Provost, F. L., Laude, H., & Vilotte, J. (2009) · FEBS Letters · doi:10.1016/j.febslet.2009.09.027 · Cited by 67 · see citing works
Park, C., Lee, S., Chern, M., et al. (2010) · Plant Science · doi:10.1016/j.plantsci.2010.07.008 · Cited by 50 · see citing works
Self-citationReversible suppression of an essential gene in adult mice using transgenic RNA interference
McJunkin, K., Mazurek, A., Premsrirut, P. K., Zuber, J. A., Dow, L. E., Simon, J. M., Stillman, B., & Lowe, S. W. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1104097108 · Cited by 48 · see citing works
Law, S. H. W., & Sargent, T. D. (2014) · PLoS ONE · doi:10.1371/journal.pone.0100268 · Cited by 45 · see citing works
p21 gene knock down does not identify genetic effectors seen with gene knock out
Karakas, B., Weeraratna, A. T., Abukhdeir, A. M., Konishi, H., Gustin, J. P., Vitolo, M. I., Bachman, K. E., & Park, B. H. (2007) · Cancer Biology & Therapy · doi:10.4161/cbt.6.7.4202 · Cited by 24 · see citing works
Michalko, J., Glanc, M., Perrot‐Rechenmann, C., et al. (2016) · F1000Research · doi:10.12688/f1000research.7654.1 · Cited by 23 · see citing works
Grand, X., Espinoza, R., Michel, C., et al. (2012) · Plant Biotechnology Journal · doi:10.1111/j.1467-7652.2012.00703.x · Cited by 21 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
CRISPR/Cas: A powerful tool for gene function study and crop improvement
Zhang, D., Zhang, Z., Unver, T., & Zhang, B. (2021) · Journal of Advanced Research · doi:10.1016/j.jare.2020.10.003 · Cited by 373 · see citing works
Advanced domestication: harnessing the precision of gene editing in crop breeding
Lyzenga, W. J., Pozniak, C. J., & Kagale, S. (2021) · Plant Biotechnology Journal · doi:10.1111/pbi.13576 · Cited by 85 · see citing works
Karunarathne, S., Walker, E., Sharma, D., Li, C., & Han, Y. (2023) · Journal of Zhejiang University-SCIENCE B · doi:10.1631/jzus.b2200552 · Cited by 18 · see citing works
“…widely used applica‐ tion of CRISPR/Cas9, and single or multiple gene knockouts have been successfully observed in maize, barley, wheat, and rice (Li et al., 2013; Doll et al., 2019; Kim et al., 2019; Lawrenson and Harwood, 2019; Křenek et al., 2021; Zhang et al., 2021; Karunarathne et al., 2022).”
- Authors
- Kim, Y.-A., Moon, H., & Park, C.-J.
- Affiliations
- Sejong University (KR)
- Corresponding author
- Park, Chang-Jin
- Venue
- Rice
- Published
- 2019-08-24
- Volume
- 12
- Issue
- 1
- Pages
- 67-67
- ISSN
- 1939-8425 (ISSN-L)
- 1939-8433
- PMC
- PMC6708514
- OpenAlex
- W2969916037
- Cited by
- 149
- References
- 57
- Citations by year
- 2026: 11 · 2025: 18 · 2024: 24 · 2023: 24 · 2022: 32 · 2021: 24 · 2020: 13 · 2019: 2
- FWCI
- 5.87
- Type
- journal article
- Language
- en
- Update notices
- correction (2019-09-13)
- Open access
- gold
- doi.org
- Locations
- Rice (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Basic Research Program of National Research Foundation of Korea (NRF-2017R1D1A1B03032215)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Pathogenic Bacteria Studies
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
- Keywords
- Xanthomonas oryzae pv. oryzae, bacterial blight resistance, CRISPR/Cas9 genome editing, gene knockout, pollen development
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review