Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew
Abstract
Sequence-specific nucleases have been applied to engineer targeted modifications in polyploid genomes, but simultaneous modification of multiple homoeoalleles has not been reported. Here we use transcription activator-like effector nuclease (TALEN) and clustered, regularly interspaced, short palindromic repeats (CRISPR)-Cas9 (refs. 4,5) technologies in hexaploid bread wheat to introduce targeted mutations in the three homoeoalleles that encode MILDEW-RESISTANCE LOCUS (MLO) proteins. Genetic redundancy has prevented evaluation of whether mutation of all three MLO alleles in bread wheat might confer resistance to powdery mildew, a trait not found in natural populations. We show that TALEN-induced mutation of all three TaMLO homoeologs in the same plant confers heritable broad-spectrum resistance to powdery mildew. We further use CRISPR-Cas9 technology to generate transgenic wheat plants that carry mutations in the TaMLO-A1 allele. We also demonstrate the feasibility of engineering targeted DNA insertion in bread wheat through nonhomologous end joining of the double-strand breaks caused by TALENs. Our findings provide a methodological framework to improve polyploid crops.
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CRISPR-Cas9 has been successfully applied to crop plants to alter agriculturally important traits such as disease resistance and drought tolerance.
“The technique has already been successfully applied to crop plants to alter agriculturally important traits such as disease resistance (Wang et al., 2014) and drought tolerance (Shi et al., 2017).”
From Genetically engineered crops help support conservation biological control (2019) · cites this paper as Wang et al., 2014
Cites
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339 · see citing works
RNA-Guided Human Genome Engineering via Cas9
Mali, P., Yang, L., Esvelt, K. M., Aach, J., Guell, M., DiCarlo, J. E., Norville, J. E., & Church, G. M. (2013) · Science · doi:10.1126/science.1232033 · Cited by 9,210 · see citing works
Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors
Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A., & Bonas, U. (2009) · Science · doi:10.1126/science.1178811 · Cited by 2,707 · see citing works
P ATHOGEN P OPULATION G ENETICS , E VOLUTIONARY P OTENTIAL, AND D URABLE R ESISTANCE
McDonald, B. A., & Linde, C. C. (2002) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.40.120501.101443 · Cited by 2,180 · see citing works
Čermák, T., Doyle, E., Christian, M. L., Wang, L., Zhang, Y., Schmidt, C. L., Baller, J. A., Somia, N. V., Bogdanove, A. J., & Voytas, D. F. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr218 · Cited by 2,034 · see citing works
Self-citationA Simple Cipher Governs DNA Recognition by TAL Effectors
Moscou, M., & Bogdanove, A. J. (2009) · Science · doi:10.1126/science.1178817 · Cited by 1,992 · see citing works
Targeted genome modification of crop plants using a CRISPR-Cas system
Shan, Q., Wang, Y., Li, J., Zhang, Y., Chen, K., Liang, Z., Zhang, K., Liu, J., Xi, J., Qiu, J., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2650 · Cited by 1,965 · see citing works
Self-citationDouble-Strand Break End Resection and Repair Pathway Choice
Symington, L. S., & Gautier, J. (2011) · Annual Review of Genetics · doi:10.1146/annurev-genet-110410-132435 · Cited by 1,482 · see citing works
The Barley Mlo Gene: A Novel Control Element of Plant Pathogen Resistance
Büschges, R., Hollricher, K., Panstruga, R., Simons, G., Wolter, M., Frijters, A., van Daelen, R., van der Lee, T., Diergaarde, P. J., Groenendijk, J., et al. (1997) · Cell · doi:10.1016/s0092-8674(00)81912-1 · Cited by 1,194 · see citing works
Christensen, A. H., & Quail, P. H. (1996) · Transgenic Research · doi:10.1007/bf01969712 · Cited by 1,175 · see citing works
A guide to genome engineering with programmable nucleases
Kim, S., & Kim, J. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3686 · Cited by 1,162 · see citing works
High-efficiency TALEN-based gene editing produces disease-resistant rice
Li, T., Liu, B., Spalding, M. H., Weeks, D. P., & Yang, B. (2012) · Nature Biotechnology · doi:10.1038/nbt.2199 · Cited by 1,149 · see citing works
Efficient genome editing in plants using a CRISPR/Cas system
Feng, Z., Zhang, B., Ding, W., Liu, X., Yang, D., Wei, P., Cao, F., Zhu, S., Zhang, F., Mao, Y., et al. (2013) · Cell Research · doi:10.1038/cr.2013.114 · Cited by 1,070 · see citing works
Enhancing Gene Targeting with Designed Zinc Finger Nucleases
Bibikova, M. V., Beumer, K. J., Trautman, J. K., & Carroll, D. (2003) · Science · doi:10.1126/science.1079512 · Cited by 824 · see citing works
RNA-Guided Genome Editing in Plants Using a CRISPR–Cas System
Xie, K., & Yang, Y. (2013) · Molecular Plant · doi:10.1093/mp/sst119 · Cited by 806 · see citing works
Feng, Z., Mao, Y., Xu, N., Zhang, B., Wei, P., Yang, D., Wang, Z., Zhang, Z., Zheng, R., Yang, L., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1400822111 · Cited by 657 · see citing works
A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING
Slade, A. J., Fuerstenberg, S. I., Loeffler, D., Steine, M. N., & Facciotti, D. (2004) · Nature Biotechnology · doi:10.1038/nbt1043 · Cited by 601 · see citing works
Conserved requirement for a plant host cell protein in powdery mildew pathogenesis
Consonni, C., Humphry, M., Hartmann, H. A., et al. (2006) · Nature Genetics · doi:10.1038/ng1806 · Cited by 554 · see citing works
Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering
Zhang, Y., Zhang, F., Li, X., Baller, J. A., Qi, Y., Starker, C. G., Bogdanove, A. J., & Voytas, D. F. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.112.205179 · Cited by 487 · see citing works
Self-citationPrecision genome engineering and agriculture: opportunities and regulatory challenges
Voytas, D. F., & Gao, C. (2014) · PLoS Biology · doi:10.1371/journal.pbio.1001877 · Cited by 458 · see citing works
Self-citationHigh frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases
Zhang, F., Maeder, M. L., Unger‐Wallace, E., Hoshaw, J. P., Reyon, D., Christian, M. L., Li, X., Pierick, C. J., Dobbs, D. L., Peterson, T., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914991107 · Cited by 379 · see citing works
Bai, Y., Pavan, S., Zheng, Z., et al. (2007) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-21-1-0030 · Cited by 342 · see citing works
Rapid and Efficient Gene Modification in Rice and Brachypodium Using TALENs
Shan, Q., Wang, Y., Chen, K., Liang, Z., Li, J., Zhang, Y., Zhang, K., Liu, J., Voytas, D. F., Zheng, X., et al. (2013) · Molecular Plant · doi:10.1093/mp/sss162 · Cited by 288 · see citing works
Self-citationA barley cultivation-associated polymorphism conveys resistance to powdery mildew
Piffanelli, P., Ramsay, L., Waugh, R., et al. (2004) · Nature · doi:10.1038/nature02781 · Cited by 255 · see citing works
Hein, I., Barciszewska‐Pacak, M., Hrubikova, K., et al. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.062810 · Cited by 254 · see citing works
Targeted Mutagenesis ofArabidopsis thalianaUsing Engineered TAL Effector Nucleases
Christian, M. L., Qi, Y., Zhang, Y., et al. (2013) · G3 Genes Genomes Genetics · doi:10.1534/g3.113.007104 · Cited by 146 · see citing works
Self-citationElliott, C. E., Zhou, F., Spielmeyer, W., et al. (2002) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi.2002.15.10.1069 · Cited by 125 · see citing works
Guérineau, F., Lucy, A. P., & Mullineaux, P. M. (1992) · Plant Molecular Biology · doi:10.1007/bf00020027 · Cited by 119 · see citing works
Rasco-Gaunt, S., Riley, A., Cannell, M. E., et al. (2001) · Journal of Experimental Botany · doi:10.1093/jexbot/52.357.865 · Cited by 107 · see citing works
Virus-induced gene silencing of Mlo genes induces powdery mildew resistance in Triticum aestivum
Várallyay, É., Giczey, G., & Burgyán, J. (2012) · Archives of Virology · doi:10.1007/s00705-012-1286-y · Cited by 74 · see citing works
Triticeae Genome Structure and Evolution
Dvořák, J. (2009) · Springer eBooks · doi:10.1007/978-0-387-77489-3_23 · Cited by 45 · see citing works
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Shi, J., Gao, H., Wang, H., Lafitte, H. R., Archibald, R. L., Yang, M., Hakimi, S. M., Mo, H., & Habben, J. E. (2017) · Plant Biotechnology Journal · doi:10.1111/pbi.12603 · Cited by 1,029 · see citing works
Applications of CRISPR–Cas in agriculture and plant biotechnology
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Prime genome editing in rice and wheat
Lin, Q., Zong, Y., Xue, C., Wang, S., Jin, S., Zhu, Z., Wang, Y., Anzalone, A. V., Raguram, A., Doman, J. L., et al. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0455-x · Cited by 873 · see citing works
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Lowder, L. G., Zhang, D., Baltes, N. J., Paul, J. W., Tang, X., Zheng, X., Voytas, D. F., Hsieh, T.-F., Zhang, Y., & Qi, Y. (2015) · Plant Physiology · doi:10.1104/pp.15.00636 · Cited by 707 · see citing works
Self-citationLawrenson, T., Shorinola, O., Stacey, N., Li, C., Østergaard, L., Patron, N., Uauy, C., & Harwood, W. (2015) · Genome Biology · doi:10.1186/s13059-015-0826-7 · Cited by 551 · see citing works
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Zhang, Y., Bai, Y., Wu, G., Zou, S., Chen, Y., Gao, C., & Tang, D. (2017) · The Plant Journal · doi:10.1111/tpj.13599 · Cited by 525 · see citing works
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“The technique has already been successfully applied to crop plants to alter agriculturally important traits such as disease resistance (Wang et al., 2014) and drought tolerance (Shi et al.”
MethodHaque, E., Taniguchi, H., Hassan, M. M., Bhowmik, P., Karim, M. R., Śmiech, M., Zhao, K., Rahman, M., & Islam, T. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00617 · Cited by 236 · see citing works
Subburaj, S., Chung, S. J., Lee, C., Ryu, S.-M., Kim, D. H., Kim, J.-S., Bae, S., & Lee, G.-J. (2016) · Plant Cell Reports · doi:10.1007/s00299-016-1937-7 · Cited by 237 · see citing works
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Modrzejewski, D., Hartung, F., Lehnert, H., Sprink, T., Kohl, C., Keilwagen, J., & Wilhelm, R. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.574959 · Cited by 151 · see citing works
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Gasparis, S., Kała, M., Przyborowski, M., Łyżnik, L. A., Orczyk, W., & Nadolska-Orczyk, A. (2018) · Plant Methods · doi:10.1186/s13007-018-0382-8 · Cited by 98 · see citing works
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Lyzenga, W. J., Pozniak, C. J., & Kagale, S. (2021) · Plant Biotechnology Journal · doi:10.1111/pbi.13576 · Cited by 85 · see citing works
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van de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P., & Smulders, M. J. M. (2017) · Plant Biotechnology Reports · doi:10.1007/s11816-017-0425-z · Cited by 80 · see citing works
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Holme, I. B., Wendt, T., Gil-Humanes, J., Deleuran, L. C., Starker, C. G., Voytas, D. F., & Brinch-Pedersen, H. (2017) · Plant Molecular Biology · doi:10.1007/s11103-017-0640-6 · Cited by 71 · see citing works
Karunarathne, S. D., Han, Y., Zhang, X., & Li, C. (2022) · Journal of Integrative Plant Biology · doi:10.1111/jipb.13214 · Cited by 61 · see citing works
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Tariq, A., Mushtaq, M., Yaqoob, H., Bhat, B. A., Zargar, S. M., Raza, A., Ali, S., Charagh, S., Mubarik, M. S., Zaman, Q. U., et al. (2023) · GM Crops & Food · doi:10.1080/21645698.2023.2219111 · Cited by 45 · see citing works
- Authors
- Wang, Y., Cheng, X., Shan, Q., Zhang, Y., Liu, J., Gao, C., & Qiu, J.-L.
- Affiliations
- Chinese Academy of Sciences (CN)
- Corresponding author
- Gao, Caixia
- Qiu, Jin-Long
- Venue
- Nature Biotechnology
- Published
- 2014-07-20
- Volume
- 32
- Issue
- 9
- Pages
- 947-951
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W1980201684
- Cited by
- 2,072
- References
- 31
- Citations by year
- 2026: 114 · 2025: 174 · 2024: 163 · 2023: 212 · 2022: 245 · 2021: 235 · 2020: 203 · 2019: 170 · 2018: 145 · 2017: 173 · 2016: 136 · 2015: 82 · 2014: 18
- FWCI
- 56.00
- Type
- journal article
- Language
- en
- Update notices
- correction (2025-11-03)
- Open access
- closed
- Licence
- Locations
- Nature Biotechnology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Chinese Academy of Sciences
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Wheat and Barley Genetics and Pathology
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
- Keywords
- hexaploid wheat, MLO proteins, powdery mildew resistance, TALEN, CRISPR/Cas9, genome editing, gene redundancy, polyploid crops, non-homologous end joining, transgenic wheat, broad-spectrum disease resistance
- MeSH terms
- Alleles, Ascomycota, Base Sequence, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Triticum, RNA Editing
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