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Rapid gene isolation in barley and wheat by mutant chromosome sequencing
Open accessAbstract
Identification of causal mutations in barley and wheat is hampered by their large genomes and suppressed recombination. To overcome these obstacles, we have developed MutChromSeq, a complexity reduction approach based on flow sorting and sequencing of mutant chromosomes, to identify induced mutations by comparison to parental chromosomes. We apply MutChromSeq to six mutants each of the barley Eceriferum-q gene and the wheat Pm2 genes. This approach unambiguously identified single candidate genes that were verified by Sanger sequencing of additional mutants. MutChromSeq enables reference-free forward genetics in barley and wheat, thus opening up their pan-genomes to functional genomics.
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Citations
Cited by
Zhang, Y., Bai, Y., Wu, G., Zou, S., Chen, Y., Gao, C., & Tang, D. (2017) · The Plant Journal · doi:10.1111/tpj.13599 · Cited by 525
Li, Y., Wei, Z.-Z., Sela, H., Govta, L., Klymiuk, V., Roychowdhury, R., Chawla, H. S., Ens, J., Wiebe, K., Bocharova, V., et al. (2024) · Plant Communications · doi:10.1016/j.xplc.2023.100646 · Cited by 103
Self-citationWheat powdery mildew resistance gene Pm13 encodes a mixed lineage kinase domain-like protein
Li, H., Men, W., Ma, C., Liu, Q., Dong, Z., Tian, X., Wang, C., Liu, C., Gill, H. S., Ma, P., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-46814-7 · Cited by 67
(2024) · doi:10.1038/s41467-024-49257-2 · Cited by 66
A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley
Chen, C., Jost, M., Outram, M. A., Friendship, D., Chen, J., Wang, A., Periyannan, S., Bartoš, J., Holušová, K., Doležel, J., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41021-2 · Cited by 38
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Metadata
- Authors
- Sánchez-Martín, J., Steuernagel, B., Ghosh, S., Herren, G., Hurni, S., Adamski, N., Vrána, J., Kubaláková, M., Krattinger, S. G., Wicker, T., Doležel, J., Keller, B., & Wulff, B. B. H.
- Venue
- Genome Biology
- Published
- 2016-10-31
- Volume
- 17
- Issue
- 1
- Pages
- 221-221
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2538745361
- Cited by
- 325
- References
- 0
- FWCI
- 24.58
- Type
- journal article
- Language
- en
- Open access
- gold
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- Sánchez-Martín, J., Steuernagel, B., Ghosh, S., Herren, G., Hurni, S., Adamski, N., Vrána, J., Kubaláková, M., Krattinger, S. G., Wicker, T., Doležel, J., Keller, B., & Wulff, B. B. H. (2016). Rapid gene isolation in barley and wheat by mutant chromosome sequencing. Genome Biology. https://doi.org/10.1186/s13059-016-1082-1
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