Gut microbiome affects the response to anti-PD-1 immunotherapy in patients with hepatocellular carcinoma
Open accessAbstract
BACKGROUND: Checkpoint-blockade immunotherapy targeting programmed cell death protein 1 (PD-1) has recently shown promising efficacy in hepatocellular carcinoma (HCC). However, the factors affecting and predicting the response to anti-PD-1 immunotherapy in HCC are still unclear. Herein, we report the dynamic variation characteristics and specificities of the gut microbiome during anti-PD-1 immunotherapy in HCC using metagenomic sequencing. RESULTS: Fecal samples from patients responding to immunotherapy showed higher taxa richness and more gene counts than those of non-responders. For dynamic analysis during anti-PD-1 immunotherapy, the dissimilarity of beta diversity became prominent across patients as early as Week 6. In non-responders, Proteobacteria increased from Week 3, and became predominant at Week 12. Twenty responder-enriched species, including Akkermansia muciniphila and Ruminococcaceae spp., were further identified. The related functional genes and metabolic pathway analysis, such as carbohydrate metabolism and methanogenesis, verified the potential bioactivities of responder-enriched species. CONCLUSIONS: Gut microbiome may have a critical impact on the responses of HCC patients treated with anti-PD-1 immunotherapy. The dynamic variation characteristics of the gut microbiome may provide early predictions of the outcomes of immunotherapy in HCC, which is critical for disease-monitoring and treatment decision-making.
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Written from the paper’s full text.
TL;DR
In eight HCC patients treated with anti-PD-1 camrelizumab, fecal metagenomics showed responders had higher taxa richness and gene counts and distinct microbiome trajectories, with Proteobacteria increasing early in non-responders. Twenty responder-enriched species, including *Akkermansia muciniphila* and Ruminococcaceae spp., were identified, but causality remains unknown.
Key findings
- Among 8 BCLC Stage C HCC patients (responders n = 3; non-responders n = 5), responders showed higher taxa richness and more gene counts than non-responders over the entire treatment.
- Beta diversity inter-group dissimilarity became significantly higher than intra-group differentiation as early as Week 6; in non-responders, Proteobacteria increased from Week 3 and became predominant at Week 12, mainly due to *Escherichia coli*, while responders remained relatively stable at the phylum level.
- LEfSe identified 20 responder-enriched and 15 non-responder-enriched species; responder-enriched species included *Akkermansia muciniphila*, Ruminococcaceae spp., Lachnospiraceae bacterium 7_1_58FAA, four *Lactobacillus* species, *Bifidobacterium dentium*, and *Streptococcus thermophilus*.
- A total of 189 KEGG orthologies were enriched in responders, and 123 responder-enriched KOs positively correlated with 18 responder-enriched species; associated pathways included carbohydrate metabolism, methanogenesis, sulfate reduction, carbon fixation, carotenoid biosynthesis, and unsaturated fatty acid metabolism.
Methods
- Single-center cohort of 8 histologically confirmed HCC patients with BCLC Stage C disease progressing on sorafenib; patients received camrelizumab (SHR-1210) at 3 mg/kg intravenously every 3 weeks, with response assessed every 6 weeks by RECIST 1.1. Responders were complete/partial response or stable disease ≥6 months; non-responders were progressed disease or stable disease <6 months.
- Fresh fecal samples were collected at baseline, Week 1, and every 3 weeks until progression; metagenomic sequencing generated 49 datasets (28 from responders, 21 from non-responders). Taxonomic profiling used MetaPhlAn, and gene annotation used the integrated gene catalog and KEGG.
- Analyses included Wilcoxon rank-sum tests, Bray-Curtis dissimilarity/PCoA, LEfSe (LDA score cutoff 2.0, P < 0.05), SparCC correlation networks, and Spearman correlations (rho > 0.5; P < 0.01 for species-KO networks).
Limitations
- The authors state that the study highlights correlative associations and that any causal relationship remains unknown; they call for future meta-omic strategies and mouse fecal microbiota transplantation models to validate mechanisms.
- Evident from the text: the sample is very small (8 patients; 3 responders, 5 non-responders), from one hospital, with unequal observation durations (39, 21, and 18 weeks for responders; 6, 6, 9, 9, and 12 weeks for non-responders), limiting generalizability and statistical power.
- The authors note that future longitudinal studies should include both fecal and oral microbiome samples for a more comprehensive view.
Model-written summary. Check it against the paper before relying on it.
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Claims the paper makes
0 of 17 cited sources checked · 0 supported · 0 flagged
- Findingown data
Fifteen non-responder-enriched species were identified.
“Twenty R-enriched species and fifteen NR-enriched species were identified”
Quote in the paperNot a substantial claim - Findingown data
Bacteroidetes were the most abundant phylum, followed by Firmicutes and Proteobacteria, in the fecal microbiome of both responders and non-responders before treatment.
“Specifically, Bacteroidetes were most abundant, followed by Firmicutes and Proteobacteria.”
Quote in the paperNot a substantial claim - Findingown data
Twenty responder-enriched species were identified, including Akkermansia muciniphila and Ruminococcaceae spp.
“Twenty responder-enriched species, including Akkermansia muciniphila and Ruminococcaceae spp., were further identified.”
- Also stated in: § Results and discussion · plain
“Twenty R-enriched species and fifteen NR-enriched species were identified”
Quote in the paperSubstantial claim - Also stated in: § Results and discussion · plain
- Findingown data
Among R-enriched bacteria, the four Lactobacillus species were most significantly correlated with each other.
“Among the R-enriched bacteria, the four Lactobacillus species were most significantly correlated with each other”
Quote in the paperNot a substantial claim - Findingown data
Microbial composition at the phylum level in responders remained relatively stable during treatment.
“As treatment proceeded, microbial composition at the phylum level in R remained relatively stable.”
Quote in the paperSubstantial claim
- Findingown data
In non-responders, the increase of Proteobacteria was mainly attributed to the prevalence of Escherichia coli.
“Increase of Proteobacteria in NR was mainly attributed to the prevalence of Escherichia coli”
Quote in the paperNot a substantial claim - Findingown data
The cellobiose-transport system (ko02010) was significantly correlated with B. dentium.
“the cellobiose-transport system (ko02010) was significantly correlated with B. dentium”
Quote in the paperNot a substantial claim - Findingown data
A total of 189 KEGG orthologies (KOs) were enriched in responders (Kruskal-Wallis P < 0.05).
“A total of 189 Kyoto Encyclopedia of Genes and Genomes (KEGG) orthologies (KOs) were identified to be enriched in R (Kruskal-Wallis rank sum test, P < 0.05).”
Quote in the paperSubstantial claim - Findingown data
The methanogenesis pathway (ko00680) was correlated with R. obeum and the four Lactobacillus species.
“Methanogenesis pathway (ko00680) was found to be correlated with R. obeum and the four Lactobacillus species.”
Quote in the paperNot a substantial claim - Findingown data
Significant positive correlations were identified between 123 R-enriched KOs and 18 R-enriched species (Spearman rho > 0.5).
“Significant positive correlations were identified between 123 R-enriched KOs and 18 R-enriched species (Spearman’s correlation, rho > 0.5, Additional file 6: Table S1).”
Quote in the paperNot a substantial claim - Findingown data
Enrichment of one Lachnospiraceae and two Ruminococcaceae species (Lachnospiraceae bacterium 7_1_58FAA, Ruminococcus obeum, Ruminococcus bromii) and Akkermansia muciniphila in responders was observed.
“Notably, enrichment of one Lachnospiraceae and two Ruminococcaceae species (Lachnospiraceae bacterium 7_1_58FAA, Ruminococcus obeum, Ruminococcus bromii) and Akkermansia muciniphila in R was also observed.”
Quote in the paperSubstantial claim - Findingown data
The pectin lyase (K01732) was correlated with A. muciniphila.
“the pectin lyase (K01732), which may be involved in pectin metabolism, was correlated with A. muciniphila”
Quote in the paperNot a substantial claim - Findingown data
During anti-PD-1 immunotherapy, inter-group dissimilarity in beta diversity (Bray-Curtis) became significantly higher than intra-group differentiation as early as Week 6.
“For dynamic analysis during anti-PD-1 immunotherapy, the dissimilarity of beta diversity became prominent across patients as early as Week 6.”
- Also stated in: § Results and discussion · plain
“the beta diversity evaluated by Bray-Curtis distances showed that the inter-group dissimilarity became significantly higher than the intra-group differentiation as early as Week 6”
Quote in the paperSubstantial claim - Also stated in: § Results and discussion · plain
- Findingown data
In responders, the most notable proteobacterial member was Klebsiella pneumoniae.
“while the most notable proteobacterial member in R was Klebsiella pneumoniae”
Quote in the paperNot a substantial claim - Interpretationown data
Gut microbiome may have a critical impact on the responses of HCC patients treated with anti-PD-1 immunotherapy.
“Gut microbiome may have a critical impact on the responses of HCC patients treated with anti-PD-1 immunotherapy.”
Quote in the paperSubstantial claim - Interpretationown data
The dynamic variation characteristics of the gut microbiome may provide early prediction of the outcomes of anti-PD-1 immunotherapy in HCC.
“The dynamic variation characteristics of the gut microbiome may provide early predictions of the outcomes of immunotherapy in HCC, which is critical for disease-monitoring and treatment decision-making.”
- Also stated in: § Results and discussion · hedged
“the dynamic-variation characteristics of the gut microbiome might be used for early prediction of the six-month outcomes of anti-PD-1 immunotherapy in HCC at 3–6 weeks after treatment initiation”
Quote in the paperSubstantial claim - Also stated in: § Results and discussion · hedged
- Interpretationown data
The dynamic variation characteristics of gut-microbial diversity and composition at the early treatment period of anti-PD-1 immunotherapy in HCC may have distinct implications on drug efficacy and disease prognosis.
“These findings suggested that the dynamic variation characteristics of gut-microbial diversity and composition at the early treatment period of anti-PD-1 immunotherapy in HCC may have distinct implications on drug efficacy and disease prognosis.”
Quote in the paperSubstantial claim - Interpretationown data
Such findings further illustrated the potential underlying mechanisms of gut microbiome influencing the anti-PD-1 immunotherapy efficacy in HCC patients.
“Such findings further illustrated the potential underlying mechanisms of gut microbiome influencing the anti-PD-1 immunotherapy efficacy in HCC patients.”
Quote in the paperNot a substantial claim - Interpretationown data
The four Lactobacillus species may have pivotal roles in the mutualistic network.
“indicating their possible pivotal roles in the network”
Quote in the paperNot a substantial claim - Interpretationcitation
At baseline, no severe gut microbiome dysbiosis was present in the study group.
“suggesting that no severe gut microbiome dysbiosis was present in the study group at baseline”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [9] Human Microbiome Project C. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–14. source
Not checked in the free run.
- Interpretationown data
Functional gene and metabolic pathway analysis, such as carbohydrate metabolism and methanogenesis, verified the potential bioactivities of responder-enriched species.
“The related functional genes and metabolic pathway analysis, such as carbohydrate metabolism and methanogenesis, verified the potential bioactivities of responder-enriched species.”
- Also stated in: § Results and discussion · plain
“Pathway identification of KOs verified the potential bioactivities of R-enriched species”
Quote in the paperSubstantial claim - Also stated in: § Results and discussion · plain
- Interpretationown data
The dynamic-variation characteristics of the gut microbiome might be used for early prediction of the six-month outcomes of anti-PD-1 immunotherapy in HCC at 3-6 weeks after treatment initiation.
“we illustrated that the dynamic-variation characteristics of the gut microbiome might be used for early prediction of the six-month outcomes of anti-PD-1 immunotherapy in HCC at 3–6 weeks after treatment initiation”
Quote in the paperSubstantial claim - Premisecitation
Sorafenib has an objective response rate of less than 5% in advanced-stage HCC.
“The oral multi-kinase inhibitor, sorafenib, is the standard systemic therapeutic option for advanced-stage HCC and has an objective response rate (ORR) of less than 5% [2].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [2] Cheng AL, Kang YK, Chen Z, Tsao CJ, Qin S, Kim JS, et al. Efficacy and safety of sorafenib in patients in the Asia-Pacific region with advanced hepatocellular carcinoma: a phase III randomised, double-blind, placebo-controlled trial. The Lancet Oncology. 2009;10(1):25–34. source
Not checked in the free run.
- May combine two claims. 12
- Classified as probably not a substantial claim. 16
May combine two claims.
Findingown dataFecal samples from HCC patients responding to anti-PD-1 immunotherapy showed higher taxa richness and more gene counts than those of non-responders.
“Fecal samples from patients responding to immunotherapy showed higher taxa richness and more gene counts than those of non-responders.”
- Also stated in: § Results and discussion · plain
“Over the entire treatment, R showed higher taxa richness and more gene counts than those of NR (Fig. 1a).”
Quote in the paperSubstantial claim- Also stated in: § Results and discussion · plain
May combine two claims.
Findingown dataThe number of significant positive-correlation pairs and the correlation strengths in R-enriched species were higher than those of NR-enriched species.
“The number of significant positive-correlation pairs and the correlation strengths in R-enriched species were higher than those of NR-enriched species.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataOther pathways with potential benefits included sulfate reduction (ko00920) and carbon fixation (ko00720) correlated with R. obeum, carotenoid biosynthesis (ko00906) correlated with B. cellulosilyticus and A. colihominis, and unsaturated fatty acid metabolism (ko00590) associated with C. comes.
“Other pathways with potential benefits included sulfate reduction (ko00920) and carbon fixation (ko00720) functions that were correlated with R. obeum, carotenoid biosynthesis (ko00906) correlated with B. cellulosilyticus and A. colihominis, and unsaturated fatty acid metabolism (ko00590) associated with C. comes”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn non-responders, Proteobacteria increased from Week 3 and became predominant at Week 12.
“In non-responders, Proteobacteria increased from Week 3, and became predominant at Week 12.”
- Also stated in: § Results and discussion · plain
“in NR, Proteobacteria markedly increased as early as Week 3, and became predominant at Week 12”
Quote in the paperSubstantial claim- Also stated in: § Results and discussion · plain
May combine two claims.
Findingown dataThe present study showed different trajectories of microbiome shifts between responders and non-responders and revealed a stronger stability of the gut microbiome in responders during the whole course of treatment.
“the present study showed the different trajectories of microbiome shifts between R and NR and revealed a stronger stability of the gut microbiome in R during the whole course of treatment.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationFactors including age, genetics, and diet may influence microbiome composition.
“It is well recognized that factors including age, genetics, and diet may influence microbiome composition [14].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [14] Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011;334(6052):105–8. source
Not checked in the free run.
May combine two claims.
Interpretationown dataThe findings indicate biological significance of particular bacterial strains during anti-PD-1 immunotherapy in HCC and may provide support for development of a gut-microbiome-modulation scheme in immunotherapy.
“Our findings further indicated the biological significance of particular bacterial strains during anti-PD-1 immunotherapy in HCC and may provide support for the development of a gut-microbiome-modulation scheme in immunotherapy.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAn individual's microbiota could be remarkably stable, with 60% of strains remaining over the course of five years.
“A study demonstrated that an individual’s microbiota could be remarkably stable, with 60% of strains remaining over the course of five years”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [15] Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, et al. The long-term stability of the human gut microbiota. Science. 2013;341(6141):1237439. source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationGopalakrishnan et al. found a statistically significant positive correlation between CD8+ T cell infiltrate in the tumor and the Faecalibacterium genus as well as the Ruminococcaceae family.
“Gopalakrishnan et al. compared the tumor-associated immune infiltrates via multi-parameter immunohistochemistry (IHC) and found a statistically significant positive correlation between CD8+ T cell infiltrate in the tumor and the Faecalibacterium genus as well as the Ruminococcaceae family”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, Karpinets TV, et al. Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. Science. 2018;359(6371):97–103. source
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Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationBoth cellulose and pectin have been highlighted for their prebiotic and anti-inflammatory potential as dietary fibers.
“Both cellulose and pectin have been highlighted for their prebiotic and anti-inflammatory potential as dietary fibers [11, 12].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [11] Shoaie S, Ghaffari P, Kovatcheva-Datchary P, Mardinoglu A, Sen P, Pujos-Guillot E, et al. Quantifying diet-induced metabolic changes of the Human gut Microbiome. Cell Metab. 2015;22(2):320–31. source
Not checked in the free run.
- cites [12] Chung WSF, Meijerink M, Zeuner B, Holck J, Louis P, Meyer AS, et al. Prebiotic potential of pectin and pectic oligosaccharides to promote anti-inflammatory commensal bacteria in the human colon. FEMS Microbiol Ecol. 2017;1, 93(11). source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn previous studies, a significantly higher relative abundance of Ruminococcaceae was identified in melanoma patients responding to anti-PD-1 immunotherapy.
“In previous studies, a significantly higher relative abundance of Ruminococcaceae was identified in melanoma patients responding to anti-PD-1 immunotherapy [7]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, Karpinets TV, et al. Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. Science. 2018;359(6371):97–103. source
Not checked in the free run.
Classified as probably not a substantial claim.
Study design and conductreasoningAny causal relationship of the correlative associations between changes in the gut microbiome and host-immune responses to drugs remains unknown.
“Although our present microbiome-wide association study highlighted the association between changes in the gut microbiome and host-immune responses to drugs, any causal relationship of these correlative associations remains unknown.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationOral administration of Bifidobacterium could improve tumor control efficacy of PD-L1-specific antibody therapy.
“Oral administration of Bifidobacterium could improve tumor control efficacy of programmed cell death protein 1 ligand 1 (PD-L1)-specific antibody therapy [10]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [10] Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, et al. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy. Science. 2015;350(6264):1084–9. source
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Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationOral supplementation with A. muciniphila could restore the efficacy of anti-PD-1 immunotherapy.
“oral supplementation with A. muciniphila could restore the efficacy of anti-PD-1 immunotherapy [8]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Routy B, Le Chatelier E, Derosa L, Duong CPM, Alou MT, Daillere R, et al. Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors. Science. 2018;359(6371):91–7. source
Not checked in the free run.
Classified as probably not a substantial claim. May combine two claims.
Study design and conductreasoningIn the present study, patients were enrolled with strict criteria to minimize potential dietary or geographical influences during the whole course of treatment, and to ensure that dynamic changes of gut microbiota in both R and NR were attributed to the therapeutic intervention instead of daily factors.
“In the present study, patients were enrolled with strict criteria to minimize potential dietary or geographical influences during the whole course of treatment, as well as to ensure that the dynamic changes of gut microbiota in both R and NR were attributed to the therapeutic intervention instead of any daily factors.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationMethane generated in the human gastrointestinal tract has been reported to ameliorate oxidative stress injury and suppress the host inflammatory response.
“Methane generated in human gastrointestinal tract has been reported to ameliorate oxidative stress injury and suppress the host inflammatory response [13].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [13] Zhang X, Li N, Shao H, Meng Y, Wang L, Wu Q, et al. Methane limit LPS-induced NF-kappaB/MAPKs signal in macrophages and suppress immune response in mice by enhancing PI3K/AKT/GSK-3beta-mediated IL-10 expression. Sci Rep. 2016;6:29359. source
Not checked in the free run.
Classified as probably not a substantial claim. May combine two claims.
Study design and conductreasoningSamples were collected only from one hospital with local individuals who shared common dietary intake patterns.
“we collected samples only from one hospital with local individuals who shared common dietary intake patterns.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductown data78.12% of the raw reads were high-quality, with an average length of 72 bp and an average Q35 score of 100%.
“Overall, 78.12% of the raw reads were regarded as high-quality reads, with an average length of 72 bp and an average Q35 score of 100% (Additional file 8: Table S3).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIn two multicenter phase 2 studies, the objective response rate of anti-PD-1 immunotherapy in sorafenib-refractory HCC was nearly 20%, quadrupling that of sorafenib.
“In two multicenter, phase 2 studies [3, 4] investigating the efficacy of anti-PD-1 immunotherapy in sorafenib-refractory HCC, the ORR was nearly 20%, which quadrupled that of sorafenib.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [3] El-Khoueiry AB, Sangro B, Yau T, Crocenzi TS, Kudo M, Hsu C, et al. Nivolumab in patients with advanced hepatocellular carcinoma (CheckMate 040): an open-label, non-comparative, phase 1/2 dose escalation and expansion trial. Lancet (London, England). 2017;389(10088):2492–502. source
Not checked in the free run.
- cites [4] Zhu AX, Finn RS, Edeline J, Cattan S, Ogasawara S, Palmer D, et al. Pembrolizumab in patients with advanced hepatocellular carcinoma previously treated with sorafenib (KEYNOTE-224): a non-randomised, open-label phase 2 trial. The Lancet Oncology. 2018;19(7):940–52. source
Not checked in the free run.
Classified as probably not a substantial claim.
Study design and conductnone givenNo antibiotics were applied during treatment.
“During the treatment, no antibiotics were applied.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim. May combine two claims.
Study design and conductnone givenNone of the patients had experienced diarrhea or other intestinal symptoms, or antibiotic/probiotic consumption during the study.
“None of the patients had experienced diarrhea or other intestinal symptoms, or antibiotic/probiotic consumption during the study.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Study design and conductreasoningPatients were asked to keep their own dietary and other habits during drug treatment to avoid any interruption to their inherent gut microbiome.
“Patients were asked to keep their own dietary and other habits during drug treatment to avoid any interruption to their inherent gut microbiome.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe role of the gut microbiome in modulating tumor responses to immunotherapy in melanoma, non-small cell lung cancer, renal cell carcinoma, and urothelial carcinoma has received increased attention across a series of studies.
“The role of the gut microbiome in modulating tumor responses to immunotherapy in melanoma [5–7], non-small cell lung cancer, renal cell carcinoma, and urothelial carcinoma [6, 8] has received increased attention across a series of studies in recent years.”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [5] Matson V, Fessler J, Bao R, Chongsuwat T, Zha Y, Alegre ML, et al. The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients. Science. 2018;359(6371):104. source
Not checked in the free run.
- cites [6] Vetizou M, Pitt JM, Daillere R, Lepage P, Waldschmitt N, Flament C, et al. Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota. Science. 2015;350(6264):1079–84. source
Not checked in the free run.
- cites [7] Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, Karpinets TV, et al. Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. Science. 2018;359(6371):97–103. source
Not checked in the free run.
- cites [8] Routy B, Le Chatelier E, Derosa L, Duong CPM, Alou MT, Daillere R, et al. Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors. Science. 2018;359(6371):91–7. source
Not checked in the free run.
The paper relies on this without support.
Factors affecting and predicting the response to anti-PD-1 immunotherapy in HCC are still unclear.
“However, the factors affecting and predicting the response to anti-PD-1 immunotherapy in HCC are still unclear.”
The paper relies on this without support.
Data concerning the impact of the gut microbiome on HCC immunotherapy have not been reported.
“However, data concerning the impact of the gut microbiome on HCC immunotherapy have not been reported.”
The paper relies on this without support.
Previous research has focused more on the baseline status rather than a dynamic variation of the gut microbiome during immunotherapy.
“Additionally, previous research to date has tended to focus more on the baseline status rather than a dynamic variation of the gut microbiome during immunotherapy.”
The paper relies on this without support.
This is the first study to focus on the association between the gut microbiome and the response to anti-PD-1 immunotherapy for HCC.
“To our knowledge, this is the first study to focus on the association between the gut microbiome and the response to anti-PD-1 immunotherapy for HCC.”
The paper relies on this without support.
Commensal A. muciniphila and Ruminococcaceae benefited host health by preventing increases in intestinal permeability and systemic immunosuppression.
“Commensal A.muciniphila and Ruminococcaceae benefited host health by preventing increases in intestinal permeability and systemic immunosuppression.”
The paper relies on this without support.
Four Lactobacillus species (L. oris, L. mucosae, L. gasseri, L. vaginalis), Bifidobacterium dentium, and Streptococcus thermophilus were probiotic lactic acid bacteria beneficial to host metabolism and immunity by inhibiting the growth of pathogenic microorganisms.
“Among the R-enriched species, four Lactobacillus species (L. oris, L. mucosae, L. gasseri, and L. vaginalis), Bifidobacterium dentium and Streptococcus thermophilus were probiotic lactic acid bacteria, which were beneficial to host metabolism and immunity by inhibiting the growth of pathogenic microorganisms and accompanying spoilage agents.”
The paper relies on this without support.
Coprococcus comes, Bacteroides cellulosilyticus, and Subdoligranulum sp. possessed probiotic potential related with dietary fiber digestion and short-chain fatty acid production.
“Coprococcus comes, Bacteroides cellulosilyticus, and Subdoligranulum sp. also possessed probiotic potential, as they were reported to be related with dietary fiber digestion and short-chain fatty acid production.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Zheng et al. reported dynamic alterations within gut microbiome in patients with HCC during their immunotherapy, and metagenomic sequencing data showed higher taxa in faecal samples of patients responding to immunotherapy compared to non-responders.
“In recently published work, Zheng et al. reported some dynamic alterations within gut microbiome in patients with HCC during their immunotherapy. Moreover, metagenomic sequencing data showed higher taxa in faecal samples of patients, responding to immunotherapy compared to non-responders, highlighting the role of microbiome in regulating immune responses [123].”
From Immune Checkpoint Inhibitors in Cancer Therapy (2022) · cites this paper as [123]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Responder definition differs at the six-month boundary
MinorThe Results define responders with stable disease lasting over six months, while the Methods include stable disease lasting for at least six months. These definitions classify a patient with exactly six months of stable disease differently.
“responders (R, complete or partial response, or stable disease lasting for over 6 months; n = 3)”
“Responders (R, n = 3) were defined by radiographic evidence as complete or partial response, or stable disease lasting for at least six months.”
Species-correlation network has conflicting methods and thresholds
MinorThe Fig. 2 caption describes the species-correlation network as Spearman correlations with P < 0.01. The Methods instead say species correlations were calculated with SparCC and displayed at P < 0.05; they reserve Spearman correlations for bacteria-KO associations.
“b Correlation network of the R-enriched and NR-enriched species (Spearman correlations with rho > 0.5, P < 0.01 were shown).”
“SparCC algorithm was used to calculate correlations between R-enriched and NR-enriched species. Bootstrapping of 100 repetitions was used to compute the P value for each correlation, as described previously [17]. Only significant correlations with P < 0.05 and rho > 0.5 were presented in the network.”
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Metagenomic biomarker discovery and explanation
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Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726 · see citing works
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The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients
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An integrated catalog of reference genes in the human gut microbiome
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The Long-Term Stability of the Human Gut Microbiota
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The UCSC Genome Browser database: 2015 update
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“Zheng et al recently published the first study thus far on the association of gut microbiome with anti-PD-1 monotherapy in patients with HCC who have disease progression during sorafenib use.(17) Eight patients were enrolled; of them, three were responders (defined as patients who achieved complete response, partial r…”
BackgroundSelf-citationMS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody
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- Authors
- Zheng, Y., Wang, T., Tu, X., Huang, Y., Zhang, H., Tan, D., Jiang, W., Cai, S., Zhao, P., Song, R., Li, P., Qin, N., & Fang, W.
- Affiliations
- First Affiliated Hospital Zhejiang University (CN)
- Tongji University (CN)
- Corresponding author
- Qin, Nan
- Fang, Weijia
- ORCID
- Venue
- Journal for ImmunoTherapy of Cancer
- Publisher
- BMJ
- Published
- 2019-07-23
- Volume
- 7
- Issue
- 1
- Pages
- 193-193
- ISSN
- 2051-1426 (ISSN-L)
- PMC
- PMC6651993
- OpenAlex
- W2963245811
- Semantic Scholar
- b606fc8639924cb49453655568254e8fdcafad57
- Cited by
- 550
- References
- 25
- Citations by year
- 2026: 68 · 2025: 84 · 2024: 86 · 2023: 99 · 2022: 87 · 2021: 72 · 2020: 47 · 2019: 6 · 2013: 1
- FWCI
- 17.54
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal for ImmunoTherapy of Cancer (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Natural Science Foundation of China (31670118)
- the Key Subject of Clinical Medical Engineering of Zhejiang Province (No. G3221)
- Natural Science Foundation of Zhejiang Province (LR15H030002)
- the Major Scientific Project of Zhejiang Province (2017C03028)
- S&T Major Project of China (2017ZX10203205)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Oncology › Cancer Immunotherapy and Biomarkers
- Health Sciences › Medicine › Hepatology › Hepatocellular Carcinoma Treatment and Prognosis
- Keywords
- gut microbiota, anti-PD-1 therapy, hepatocellular carcinoma, immunotherapy response prediction, Akkermansia muciniphila, Ruminococcaceae, Proteobacteria, beta diversity, methanogenesis, carbohydrate metabolism, metagenomics
- MeSH terms
- Clinical Decision-Making, Gastrointestinal Microbiome, Bacteria, Carcinoma, Hepatocellular, Humans, Immunotherapy, Liver Neoplasms, Phylogeny, Treatment Outcome, Sequence Analysis, DNA, Metabolic Networks and Pathways, Metagenomics, Programmed Cell Death 1 Receptor, Antibodies, Monoclonal, Humanized
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-06.
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