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ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis
Abstract
The shoot apical meristem comprises undifferentiated stem cells and their derivatives, which include founder cells for lateral organs such as leaves. Meristem maintenance and lateral organ specification are regulated in part by negative interactions between the myb domain transcription factor ASYMMETRIC LEAVES1, which is expressed in lateral organ primordia, and homeobox transcription factors which are expressed in the shoot apical meristem (knox genes). The knox gene SHOOT MERISTEMLESS (STM) negatively regulates ASYMMETRIC LEAVES1 (AS1) which, in turn, negatively regulates other knox genes including KNAT1 and KNAT2, and positively regulates the novel gene LATERAL ORGAN BOUNDARIES (LOB). Genetic interactions with a second gene, ASYMMETRIC LEAVES2 (AS2), indicate it acts at the same position in this hierarchy as AS1. We have used a second-site suppressor screen to isolate mutations in KNAT1 and we show that KNAT1 is partially redundant with STM in regulating stem cell function. Mutations in KNAT2 show no such interaction. We discuss the regulation and evolution of redundancy among knox genes.
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Cites
Molecular Cloning: A Laboratory Manual
Sambrook, J., Fritsch, E., & Maniatis, T. (1989) · UCLA - Biblioteca de Ciencias de la Salud · Cited by 133,589
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis
Long, J. A., Moan, E. I., Medford, J. I., & Barton, M. K. (1996) · Nature · doi:10.1038/379066a0 · Cited by 1,537
B and C floral organ identity functions require SEPALLATA MADS-box genes
Pelaz, S., Ditta, G. S., Baumann, E., Wisman, E., & Yanofsky, M. F. (2000) · Nature · doi:10.1038/35012103 · Cited by 1,500
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
McConnell, J. R., Emery, J., Eshed, Y., Bao, N., Bowman, J., & Barton, M. K. (2001) · Nature · doi:10.1038/35079635 · Cited by 1,104
SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis
Liljegren, S. J., Ditta, G. S., Eshed, Y., Savidge, B., Bowman, J. L., & Yanofsky, M. F. (2000) · Nature · doi:10.1038/35008089 · Cited by 957
A Polycomb-group gene regulates homeotic gene expression in Arabidopsis
Goodrich, J., Puangsomlee, P., Martin, M., Long, D., Meyerowitz, E. M., & Coupland, G. (1997) · Nature · doi:10.1038/386044a0 · Cited by 829
Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis
Byrne, M. E., Barley, R., Curtis, M., Arroyo, J. M., Dunham, M., Hudson, A., & Martienssen, R. A. (2000) · Nature · doi:10.1038/35050091 · Cited by 816
Self-citationJackson, D., Veit, B., & Hake, S. (1994) · Development · doi:10.1242/dev.120.2.405 · Cited by 754
Members of the YABBY gene family specify abaxial cell fate in Arabidopsis
Siegfried, K. R., Eshed, Y., Baum, S. F., Otsuga, D., Drews, G. N., & Bowman, J. L. (1999) · Development · doi:10.1242/dev.126.18.4117 · Cited by 744
Sundaresan, V, Springer, P., Volpe, T., Haward, S., Jones, J. D., Dean, C., Ma, H., & Martienssen, R. (1995) · Genes & Development · doi:10.1101/gad.9.14.1797 · Cited by 720
Self-citationFerrándiz, C., Gu, Q., Martienssen, R., & Yanofsky, M. F. (2000) · Development · doi:10.1242/dev.127.4.725 · Cited by 703
Self-citationLincoln, C., Long, J., Yamaguchi, J., Serikawa, K., & Hake, S. (1994) · The Plant Cell · doi:10.1105/tpc.6.12.1859 · Cited by 657
Establishment of polarity in lateral organs of plants
Eshed, Y., Baum, S. F., Perea, J. V., & Bowman, J. L. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00392-x · Cited by 641
The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development
Gu, Q., Ferrándiz, C., Yanofsky, M. F., & Martienssen, R. (1998) · Development · doi:10.1242/dev.125.8.1509 · Cited by 635
Self-citationBarton, M. K., & Poethig, R. S. (1993) · Development · doi:10.1242/dev.119.3.823 · Cited by 626
The Lateral Organ Boundaries Gene Defines a Novel, Plant-Specific Gene Family
Shuai, B., Reynaga-Peña, C. G., & Springer, P. S. (2002) · Plant Physiology · doi:10.1104/pp.010926 · Cited by 555
Ogas, J., Kaufmann, S., Henderson, J., & Somerville, C. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.24.13839 · Cited by 515
Waites, R., Selvadurai, H. R. N., Oliver, I. R., & Hudson, A. (1998) · Cell · doi:10.1016/s0092-8674(00)81439-7 · Cited by 492
Endrizzi, K., Moussian, B., Haecker, A., Levin, J. Z., & Laux, T. (1996) · The Plant Journal · doi:10.1046/j.1365-313x.1996.10060967.x · Cited by 487
KNAT1 induces lobed leaves with ectopic meristems when overexpressed in Arabidopsis.
Chuck, G., Lincoln, C., & Hake, S. (1996) · The Plant Cell · doi:10.1105/tpc.8.8.1277 · Cited by 478
Semiarti, E., Ueno, Y., Tsukaya, H., Iwakawa, H., Machida, C., & Machida, Y. (2001) · Development · doi:10.1242/dev.128.10.1771 · Cited by 469
Mechanisms that control knox gene expression in the Arabidopsis shoot
Ori, N., Eshed, Y., Chuck, G., Bowman, J. L., & Hake, S. (2000) · Development · doi:10.1242/dev.127.24.5523 · Cited by 455
Smith, L. G., Greene, B., Veit, B., & Hake, S. (1992) · Development · doi:10.1242/dev.116.1.21 · Cited by 441
The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis
Clark, S. E., Jacobsen, S. E., Levin, J. Z., & Meyerowitz, E. M. (1996) · Development · doi:10.1242/dev.122.5.1567 · Cited by 402
The development of apical embryonic pattern in Arabidopsis
Long, J. A., & Barton, M. K. (1998) · Development · doi:10.1242/dev.125.16.3027 · Cited by 375
Linkage map of Arabidopsis thaliana
Koornneef, M., van Eden, J., Hanhart, C. J., Stam, P., Braaksma, F. J., & Feenstra, W. J. (1983) · Journal of Heredity · doi:10.1093/oxfordjournals.jhered.a109781 · Cited by 346
ROUGH SHEATH2: A Myb Protein That Represses knox Homeobox Genes in Maize Lateral Organ Primordia
P., M. C., Timmermans, Hudson, A., Becraft, P. W., & Nelson, T. (1999) · Science · doi:10.1126/science.284.5411.151 · Cited by 346
Kerstetter, R., Vollbrecht, E., Lowe, B., Veit, B., Yamaguchi, J., & Hake, S. (1994) · The Plant Cell · doi:10.1105/tpc.6.12.1877 · Cited by 332
The Maize rough sheath2 Gene and Leaf Development Programs in Monocot and Dicot Plants
Tsiantis, M., Schneeberger, R., Golz, J. F., Freeling, M., & Langdale, J. A. (1999) · Science · doi:10.1126/science.284.5411.154 · Cited by 315
Kerstetter, R. A., Laudencia-Chingcuanco, D., Smith, L. G., & Hake, S. (1997) · Development · doi:10.1242/dev.124.16.3045 · Cited by 312
Vollbrecht, E., Reiser, L., & Hake, S. (2000) · Development · doi:10.1242/dev.127.14.3161 · Cited by 299
The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis
Venglat, S. P., Dumonceaux, T., Rozwadowski, K., Parnell, L., Babic, V., Keller, W., Martienssen, R., Selvaraj, G., & Datla, R. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.072626099 · Cited by 273
Self-citationGene Trap Tagging of PROLIFERA , an Essential MCM2-3-5 -Like Gene in Arabidopsis
Springer, P. S., McCombie, W. R., Sundaresan, V., & Martienssen, R. A. (1995) · Science · doi:10.1126/science.7754372 · Cited by 257
Self-citationKNAT1 and ERECTA Regulate Inflorescence Architecture in Arabidopsis
Douglas, S. J., Chuck, G., Dengler, R. E., Pelecanda, L., & Riggs, C. D. (2002) · The Plant Cell · doi:10.1105/tpc.010391 · Cited by 243
Functional genomics: Probing plant gene function and expression with transposons
Martienssen, R. A. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.5.2021 · Cited by 239
Self-citationFormation and maintenance of the shoot apical meristem
Bowman, J. L., & Eshed, Y. (2000) · Trends in Plant Science · doi:10.1016/s1360-1385(00)01569-7 · Cited by 233
Mandel, M. A., & Yanofsky, M. F. (1995) · The Plant Cell · doi:10.1105/tpc.7.11.1763 · Cited by 223
The Arabidopsis SERRATE Gene Encodes a Zinc-Finger Protein Required for Normal Shoot Development
Prigge, M. J., & Wagner, D. R. (2001) · The Plant Cell · doi:10.1105/tpc.010095 · Cited by 197
Knots in the family tree: evolutionary relationships and functions of knox homeobox genes
Reiser, L., Sánchez-Baracaldo, P., & Hake, S. (2000) · Plant Molecular Evolution · doi:10.1007/978-94-011-4221-2_7 · Cited by 194
Knots in the family tree: evolutionary relationships and functions of knox homeobox genes
Reiser, L., Sánchez-Baracaldo, P., & Hake, S. (2000) · Plant Molecular Biology · doi:10.1023/a:1006384122567 · Cited by 185
Evolutionary origins and maintenance of redundant gene expression during metazoan development
Cooke, J., Nowak, M. A., Boerlijst, M., & Maynard-Smith, J. (1997) · Trends in Genetics · doi:10.1016/s0168-9525(97)01233-x · Cited by 181
Experiments on the Cause of Dorsiventrality in Leaves
SUSSEX, I. M. (1951) · Nature · doi:10.1038/167651a0 · Cited by 175
KNAT2: Evidence for a Link between Knotted-like Genes and Carpel Development
Pautot, V., Dockx, J., Hamant, O., Kronenberger, J., Grandjean, O., Jublot, D., & Traas, J. A. (2001) · The Plant Cell · doi:10.1105/tpc.010184 · Cited by 151
Genetic analysis of leaf form mutants from the Arabidopsis Information Service collection
Serrano-Cartagena, J., Robles, P., Ponce, M. R., & Micol, J. L. (1999) · Molecular and General Genetics MGG · doi:10.1007/s004380050016 · Cited by 106
Byrne, M. E., Timmermans, M. C. P., Kidner, C. A., & Martienssen, R. A. (2001) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(00)00133-3 · Cited by 85
Self-citationPhylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins
Bharathan, G., Janssen, B. J., Kellogg, E. A., & Sinha, N. R. (1999) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026136 · Cited by 81
Tsukaya, H., & Uchimiya, H. (1997) · Molecular and General Genetics MGG · doi:10.1007/s004380050565 · Cited by 73
Dockx, J., Quaedvlieg, N. E. M., Keultjes, G., Kock, P., Weisbeek, P. J., & SMEEKENS, S. C. M. (1995) · Plant Molecular Biology · doi:10.1007/bf00021196 · Cited by 72
Copying out our ABCs: the role of gene redundancy in interpreting genetic hierarchies
Martienssen, R. A. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(99)01833-8 · Cited by 50
Self-citationMeristems: start your signaling
Clark, S. E. (2001) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(00)00131-x · Cited by 50
Patterns in Vegetative Development
Martienssen, R. A., & Dolan, L. (2017) · Wiley eBooks · doi:10.1002/9781119312994.apr0008 · Cited by 8
Self-citation
Cited by
BLADE-ON-PETIOLE–Dependent Signaling Controls Leaf and Floral Patterning in Arabidopsis
Hepworth, S. R., Zhang, Y., McKim, S., Li, X., & Haughn, G. W. (2005) · The Plant Cell · doi:10.1105/tpc.104.030536 · Cited by 351
Hay, A., Barkoulas, M., & Tsiantis, M. (2006) · Development · doi:10.1242/dev.02545 · Cited by 310
Alvarez-Buylla, E. R., Benítez, M., Corvera-Poiré, A., Chaos Cador, Á., de Folter, S., Gamboa de Buen, A., Garay-Arroyo, A., García-Ponce, B., Jaimes-Miranda, F., Pérez-Ruiz, R. V., et al. (2010) · The Arabidopsis Book · doi:10.1199/tab.0127 · Cited by 298
Verkest, A., Manes, C.-L. D. O., Vercruysse, S., Maes, S., Van Der Schueren, E., Beeckman, T., Genschik, P., Kuiper, M., Inzé, D., & De Veylder, L. (2005) · The Plant Cell · doi:10.1105/tpc.105.032383 · Cited by 288
Lee, D.-K., Geisler, M., & Springer, P. S. (2009) · Development · doi:10.1242/dev.031971 · Cited by 164
Metadata
- Authors
- Byrne, M. E., Simorowski, J., & Martienssen, R. A.
- Venue
- Development
- Publisher
- The Company of Biologists
- Published
- 2002-04-15
- Volume
- 129
- Issue
- 8
- Pages
- 1957-1965
- ISSN
- 0950-1991 (ISSN-L)
- 1477-9129
- OpenAlex
- W2141180158
- Cited by
- 406
- References
- 52
- FWCI
- 30.26
- Type
- journal article
- Language
- en
- Open access
- closed
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