Cited by 114Neuroscience and Neuropharmacology ResearchSignaling Pathways in DiseaseGenetics and Neurodevelopmental Disorders

Calcineurin mediates synaptic scaling via synaptic trafficking of Ca2+-permeable AMPA receptors

Open access
Kim, Seonil, Ziff, Edward B.·2014·PLoS Biology

Abstract

Homeostatic synaptic plasticity is a negative-feedback mechanism for compensating excessive excitation or inhibition of neuronal activity. When neuronal activity is chronically suppressed, neurons increase synaptic strength across all affected synapses via synaptic scaling. One mechanism for this change is alteration of synaptic AMPA receptor (AMPAR) accumulation. Although decreased intracellular Ca2+ levels caused by chronic inhibition of neuronal activity are believed to be an important trigger of synaptic scaling, the mechanism of Ca2+-mediated AMPAR-dependent synaptic scaling is not yet understood. Here, we use dissociated mouse cortical neurons and employ Ca2+ imaging, electrophysiological, cell biological, and biochemical approaches to describe a novel mechanism in which homeostasis of Ca2+ signaling modulates activity deprivation-induced synaptic scaling by three steps: (1) suppression of neuronal activity decreases somatic Ca2+ signals; (2) reduced activity of calcineurin, a Ca2+-dependent serine/threonine phosphatase, increases synaptic expression of Ca2+-permeable AMPARs (CPARs) by stabilizing GluA1 phosphorylation; and (3) Ca2+ influx via CPARs restores CREB phosphorylation as a homeostatic response by Ca2+-induced Ca2+ release from the ER. Therefore, we suggest that synaptic scaling not only maintains neuronal stability by increasing postsynaptic strength but also maintains nuclear Ca2+ signaling by synaptic expression of CPARs and ER Ca2+ propagation.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1371/journal.pbio.1001900

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Scaling-up involves an increase in phosphorylation of GluA1 S845, but not S831, and is completely blocked in neurons with GluA1 S845A knock-in mutations, but remains intact in GluA1 S831A mutant neurons.

    “Scaling-up involves an increase in phosphorylation of GluA1 S845, but not S831, and is completely blocked in neurons with GluA1 S845A knock-in mutations, but remains intact in GluA1 S831A mutant neurons (Diering et al., 2014, Kim and Ziff, 2014).”

    From The AMPA Receptor Code of Synaptic Plasticity (2018) · cites this paper as Kim and Ziff, 2014

    The Results section, “pGluA1(S845) Is Required for TTX-Induced Synaptic Scaling” (page unavailable), reports increased S845 phosphorylation after TTX treatment and says TTX could not induce scaling in neurons from GluA1 S845A knock-in mice. Our copy does not address whether S831 phosphorylation increases or whether scaling remains intact in S831A mutant neurons (searched: S831 phosphorylation, S831A mutant neurons). (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 53

  1. [2]Desai NS, Cudmore RH, Nelson SB, Turrigiano GG (2002) Critical periods for experience-dependent synaptic scaling in visual cortex. Nat Neurosci 5: 783– 789. 12080341
  2. [3]Blackman MP, Djukic B, Nelson SB, Turrigiano GG (2012) A critical and cell-autonomous role for MeCP2 in synaptic scaling up. J Neurosci 32: 13529– 13536. 23015442 PMC3483036
  3. [4]Pratt KG, Zimmerman EC, Cook DG, Sullivan JM (2011) Presenilin 1 regulates homeostatic synaptic scaling through Akt signaling. Nat Neurosci 14: 1112– 1114. 21841774 PMC3164917
  4. [5]Goel A, Jiang B, Xu LW, Song L, Kirkwood A, et al (2006) Cross-modal regulation of synaptic AMPA receptors in primary sensory cortices by visual experience. Nat Neurosci 9: 1001– 1003. 16819524 PMC1905492
  5. [6]Wang G, Gilbert J, Man HY (2012) AMPA receptor trafficking in homeostatic synaptic plasticity: functional molecules and signaling cascades. Neural Plast 2012: 825364. 22655210 PMC3359728
  6. [7]Turrigiano GG, Nelson SB (2004) Homeostatic plasticity in the developing nervous system. Nat Rev Neurosci 5: 97– 107. 14735113
  7. [8]Beique JC, Na Y, Kuhl D, Worley PF, Huganir RL (2011) Arc-dependent synapse-specific homeostatic plasticity. Proc Natl Acad Sci U S A 108: 816– 821. 21187403 PMC3021034
  8. [9]Barry MF, Ziff EB (2002) Receptor trafficking and the plasticity of excitatory synapses. Curr Opin Neurobiol 12: 279– 286. 12049934
  9. [10]Cull-Candy S, Kelly L, Farrant M (2006) Regulation of Ca2+-permeable AMPA receptors: synaptic plasticity and beyond. Curr Opin Neurobiol 16: 288– 297. 16713244
  10. [11]Bowie D (2012) Redefining the classification of AMPA-selective ionotropic glutamate receptors. J Physiol 590: 49– 61. 22106175 PMC3300045
  11. [12]Pozo K, Goda Y (2010) Unraveling mechanisms of homeostatic synaptic plasticity. Neuron 66: 337– 351. 20471348 PMC3021747
  12. [13]Queenan BN, Lee KJ, Pak DT (2012) Wherefore art thou, homeo(stasis)? Functional diversity in homeostatic synaptic plasticity. Neural Plast 2012: 718203. 22685679 PMC3362963
  13. [14]Derkach VA, Oh MC, Guire ES, Soderling TR (2007) Regulatory mechanisms of AMPA receptors in synaptic plasticity. Nat Rev Neurosci 8: 101– 113. 17237803
  14. [15]Serulle Y, Zhang S, Ninan I, Puzzo D, McCarthy M, et al (2007) A GluR1-cGKII interaction regulates AMPA receptor trafficking. Neuron 56: 670– 688. 18031684 PMC2153457
  15. [16]Lee HK, Kameyama K, Huganir RL, Bear MF (1998) NMDA induces long-term synaptic depression and dephosphorylation of the GluR1 subunit of AMPA receptors in hippocampus. Neuron 21: 1151– 1162. 9856470
  16. [18]Turrigiano GG, Leslie KR, Desai NS, Rutherford LC, Nelson SB (1998) Activity-dependent scaling of quantal amplitude in neocortical neurons. Nature 391: 892– 896. 9495341
  17. [19]Ibata K, Sun Q, Turrigiano GG (2008) Rapid synaptic scaling induced by changes in postsynaptic firing. Neuron 57: 819– 826. 18367083
  18. [20]Soderling TR (1999) The Ca-calmodulin-dependent protein kinase cascade. Trends Biochem Sci 24: 232– 236. 10366852
  19. [21]Thiagarajan TC, Lindskog M, Tsien RW (2005) Adaptation to synaptic inactivity in hippocampal neurons. Neuron 47: 725– 737. 16129401
  20. [22]Wang HL, Zhang Z, Hintze M, Chen L (2011) Decrease in calcium concentration triggers neuronal retinoic acid synthesis during homeostatic synaptic plasticity. J Neurosci 31: 17764– 17771. 22159093 PMC3457695
  21. [24]Mosbacher J, Schoepfer R, Monyer H, Burnashev N, Seeburg PH, et al (1994) A molecular determinant for submillisecond desensitization in glutamate receptors. Science 266: 1059– 1062. 7973663
  22. [25]Sutton MA, Ito HT, Cressy P, Kempf C, Woo JC, et al (2006) Miniature neurotransmission stabilizes synaptic function via tonic suppression of local dendritic protein synthesis. Cell 125: 785– 799. 16713568
  23. [27]He K, Song L, Cummings LW, Goldman J, Huganir RL, et al (2009) Stabilization of Ca2+-permeable AMPA receptors at perisynaptic sites by GluR1-S845 phosphorylation. Proc Natl Acad Sci U S A 106: 20033– 20038. 19892736 PMC2785287
  24. [28]Lee HK, Takamiya K, Han JS, Man H, Kim CH, et al (2003) Phosphorylation of the AMPA receptor GluR1 subunit is required for synaptic plasticity and retention of spatial memory. Cell 112: 631– 643. 12628184
  25. [31]Newman RH, Zhang J (2008) Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor. Mol Biosyst 4: 496– 501. 18493642
  26. [33]Schwartz N, Schohl A, Ruthazer ES (2009) Neural activity regulates synaptic properties and dendritic structure in vivo through calcineurin/NFAT signaling. Neuron 62: 655– 669. 19524525
  27. [34]Hsieh H, Boehm J, Sato C, Iwatsubo T, Tomita T, et al (2006) AMPAR removal underlies Abeta-induced synaptic depression and dendritic spine loss. Neuron 52: 831– 843. 17145504 PMC1850952
  28. [35]D'Amelio M, Cavallucci V, Middei S, Marchetti C, Pacioni S, et al (2011) Caspase-3 triggers early synaptic dysfunction in a mouse model of Alzheimer's disease. Nat Neurosci 14: 69– 76. 21151119
  29. [36]Nabavi S, Kessels HW, Alfonso S, Aow J, Fox R, et al (2013) Metabotropic NMDA receptor function is required for NMDA receptor-dependent long-term depression. Proc Natl Acad Sci U S A 110 (10) 4027– 4032. 23431133 PMC3593861
  30. [37]Victor RG, Thomas GD, Marban E, O'Rourke B (1995) Presynaptic modulation of cortical synaptic activity by calcineurin. Proc Natl Acad Sci U S A 92: 6269– 6273. 7541535 PMC41499
  31. [38]O'Keefe SJ, Tamura J, Kincaid RL, Tocci MJ, O'Neill EA (1992) FK-506- and CsA-sensitive activation of the interleukin-2 promoter by calcineurin. Nature 357: 692– 694. 1377361
  32. [39]Akerboom J, Chen TW, Wardill TJ, Tian L, Marvin JS, et al (2012) Optimization of a GCaMP calcium indicator for neural activity imaging. J Neurosci 32: 13819– 13840. 23035093 PMC3482105
  33. [40]Bading H (2013) Nuclear calcium signalling in the regulation of brain function. Nat Rev Neurosci 14: 593– 608. 23942469
  34. [41]Morton-Jones RT, Cannell MB, Housley GD (2008) Ca2+ entry via AMPA-type glutamate receptors triggers Ca2+-induced Ca2+ release from ryanodine receptors in rat spiral ganglion neurons. Cell Calcium 43: 356– 366. 17719086
  35. [42]Ch'ng TH, Uzgil B, Lin P, Avliyakulov NK, O'Dell TJ, et al (2012) Activity-dependent transport of the transcriptional coactivator CRTC1 from synapse to nucleus. Cell 150: 207– 221. 22770221 PMC4037152
  36. [43]Hardingham GE, Arnold FJ, Bading H (2001) Nuclear calcium signaling controls CREB-mediated gene expression triggered by synaptic activity. Nat Neurosci 4: 261– 267. 11224542
  37. [45]Altimimi HF, Stellwagen D (2013) Persistent synaptic scaling independent of AMPA receptor subunit composition. J Neurosci 33: 11763– 11767. 23864664 PMC6794055
  38. [46]Sans N, Vissel B, Petralia RS, Wang YX, Chang K, et al (2003) Aberrant formation of glutamate receptor complexes in hippocampal neurons of mice lacking the GluR2 AMPA receptor subunit. J Neurosci 23: 9367– 9373. 14561864 PMC6740562
  39. [47]Higley MJ, Sabatini BL (2012) Calcium signaling in dendritic spines. Cold Spring Harb Perspect Biol 4: a005686. 22338091 PMC3312680
  40. [48]Berridge MJ (1998) Neuronal calcium signaling. Neuron 21: 13– 26. 9697848
  41. [49]Goold CP, Nicoll RA (2010) Single-cell optogenetic excitation drives homeostatic synaptic depression. Neuron 68: 512– 528. 21040851 PMC3111089
  42. [50]Gong B, Wang H, Gu S, Heximer SP, Zhuo M (2007) Genetic evidence for the requirement of adenylyl cyclase 1 in synaptic scaling of forebrain cortical neurons. Eur J Neurosci 26: 275– 288. 17650106
  43. [51]Baumgartel K, Mansuy IM (2012) Neural functions of calcineurin in synaptic plasticity and memory. Learn Mem 19: 375– 384. 22904368
  44. [52]Graupner M, Brunel N (2007) STDP in a bistable synapse model based on CaMKII and associated signaling pathways. PLoS Comput Biol 3: e221. 18052535 PMC2098851
  45. [53]Winder DG, Mansuy IM, Osman M, Moallem TM, Kandel ER (1998) Genetic and pharmacological evidence for a novel, intermediate phase of long-term potentiation suppressed by calcineurin. Cell 92: 25– 37. 9489697
  46. [54]Clem RL, Huganir RL (2010) Calcium-permeable AMPA receptor dynamics mediate fear memory erasure. Science 330: 1108– 1112. 21030604 PMC3001394
  47. [55]Pang X, Sun NL (2009) Calcineurin-NFAT signaling is involved in phenylephrine-induced vascular smooth muscle cell proliferation. Acta Pharmacol Sin 30: 537– 544. 19349967 PMC4002815
  48. [57]Chen H, Polo S, Di Fiore PP, De Camilli PV (2003) Rapid Ca2+-dependent decrease of protein ubiquitination at synapses. Proc Natl Acad Sci U S A 100: 14908– 14913. 14657369 PMC299851
  49. [58]Li HH, Kedar V, Zhang C, McDonough H, Arya R, et al (2004) Atrogin-1/muscle atrophy F-box inhibits calcineurin-dependent cardiac hypertrophy by participating in an SCF ubiquitin ligase complex. J Clin Invest 114: 1058– 1071. 15489953 PMC522252
  50. [59]Liu SJ, Zukin RS (2007) Ca2+-permeable AMPA receptors in synaptic plasticity and neuronal death. Trends Neurosci 30: 126– 134. 17275103
  51. [60]Restituito S, Khatri L, Ninan I, Mathews PM, Liu X, et al (2011) Synaptic autoregulation by metalloproteases and gamma-secretase. J Neurosci 31: 12083– 12093. 21865451 PMC3169340
  52. [61]Jordan BA, Fernholz BD, Boussac M, Xu C, Grigorean G, et al (2004) Identification and verification of novel rodent postsynaptic density proteins. Mol Cell Proteomics 3: 857– 871. 15169875
  53. [62]Kardash E, Bandemer J, Raz E (2011) Imaging protein activity in live embryos using fluorescence resonance energy transfer biosensors. Nat Protoc 6: 1835– 1846. 22051797

Cited by

Sorted by citations

Authors
Kim, S., & Ziff, E. B.
Affiliations
NYU Langone Health (US)
Corresponding author
Ziff, Edward B.
Venue
PLoS Biology
Published
2014-07-01
Volume
12
Issue
7
Pages
e1001900
ISSN
  • 1544-9173 (ISSN-L)
  • 1545-7885
OpenAlex
W2049294722
Cited by
114
References
9
Citations by year
2026: 7 · 2025: 7 · 2024: 9 · 2023: 7 · 2022: 6 · 2021: 11 · 2020: 10 · 2019: 8 · 2018: 17 · 2017: 6 · 2016: 15 · 2015: 11
FWCI
4.88
Type
journal article
Language
en
Open access
Locations
  • PLoS Biology (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders
  • NYU Langone Medical Center
  • Johns Hopkins University
  • York University
  • National Institutes of Health (GCaMP5)
  • National Institute of Neurological Disorders and Stroke (R01NS061920)
Topics
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
Keywords
synaptic scaling, calcineurin, Ca2+-permeable AMPA receptors, homeostatic plasticity, GluA1 phosphorylation, CREB phosphorylation, activity deprivation, calcium signaling, cortical neurons, AMPA receptor trafficking
MeSH terms
Animals, Endoplasmic Reticulum, Homeostasis, Neuronal Plasticity, Tetrodotoxin, Receptors, AMPA, Calcineurin, Calcium Signaling, Protein Transport, Mice

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review