Neuronal MicroRNA Deregulation in Response to Alzheimer's Disease Amyloid-β
Open accessAbstract
Normal brain development and function depends on microRNA (miRNA) networks to fine tune the balance between the transcriptome and proteome of the cell. These small non-coding RNA regulators are highly enriched in brain where they play key roles in neuronal development, plasticity and disease. In neurodegenerative disorders such as Alzheimer's disease (AD), brain miRNA profiles are altered; thus miRNA dysfunction could be both a cause and a consequence of disease. Our study dissects the complexity of human AD pathology, and addresses the hypothesis that amyloid-beta (Abeta) itself, a known causative factor of AD, causes neuronal miRNA deregulation, which could contribute to the pathomechanisms of AD. We used sensitive TaqMan low density miRNA arrays (TLDA) on murine primary hippocampal cultures to show that about half of all miRNAs tested were down-regulated in response to Abeta peptides. Time-course assays of neuronal Abeta treatments show that Abeta is in fact a powerful regulator of miRNA levels as the response of certain mature miRNAs is extremely rapid. Bioinformatic analysis predicts that the deregulated miRNAs are likely to affect target genes present in prominent neuronal pathways known to be disrupted in AD. Remarkably, we also found that the miRNA deregulation in hippocampal cultures was paralleled in vivo by a deregulation in the hippocampus of Abeta42-depositing APP23 mice, at the onset of Abeta plaque formation. In addition, the miRNA deregulation in hippocampal cultures and APP23 hippocampus overlaps with those obtained in human AD studies. Taken together, our findings suggest that neuronal miRNA deregulation in response to an insult by Abeta may be an important factor contributing to the cascade of events leading to AD.
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miR-21 is associated with regulation of toxicity mediated by Aβ oligomers, both in vitro and in vivo.
“Among these, miR-125b is associated with Tau phosphorylation [30], miR-124 with neuronal function and APP processing [25,31], and miR-21 to the regulation of toxicity mediated by Aβ oligomers, both in vitro and in vivo [32].”
From Emerging Role of miR-21-5p in Neuron–Glia Dysregulation and Exosome Transfer Using Multiple Models of Alzheimer’s Disease (2022) · cites this paper as [32]
The Results section on the APP23 mouse model reports miR-21 down-regulation alongside miRNA changes in Aβ-treated neuronal cultures, supporting an in vivo and in vitro association with Aβ exposure (page unavailable). It does not show that miR-21 regulates Aβ-oligomer-mediated toxicity; the Results section on cultured neurons reports no observed toxicity or cell death under the exposure conditions used. (LLM, conf=0.88)
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DAVID: Database for Annotation, Visualization, and Integrated Discovery
Dennis, G., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., & Lempicki, R. A. (2003) · Genome Biology · doi:10.1186/gb-2003-4-5-p3 · Cited by 9,327 · see citing works
The impact of microRNAs on protein output
Baek, D., Villén, J., Shin, C., Camargo, F. D., Gygi, S. P., & Bartel, D. P. (2008) · Nature · doi:10.1038/nature07242 · Cited by 3,592 · see citing works
Widespread changes in protein synthesis induced by microRNAs
Selbach, M., Schwanhäusser, B., Thierfelder, N., Fang, Z., Khanin, R., & Rajewsky, N. (2008) · Nature · doi:10.1038/nature07228 · Cited by 3,429 · cited 1× · see citing works
“Of the available prediction algorithms such as miRBase, PicTar, miRanda, PITA and TargetScan, all of which use site conservation as a prediction criterion, the latter was shown to result in the most accurate predictions upon target validation [27,28].”
MethodAβ Oligomers – a decade of discovery
Walsh, D. M., & Selkoe, D. J. (2007) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2006.04426.x · Cited by 1,938 · see citing works
Cogswell, J. P., Ward, J., Taylor, I. A., Waters, M., Shi, Y., Cannon, B., Kelnar, K., Kemppainen, J., Brown, D., Chen, C., et al. (2008) · Journal of Alzheimer s Disease · doi:10.3233/jad-2008-14103 · Cited by 943 · see citing works
Packer, A. N., Xing, Y., Harper, S. Q., Jones, L., & Davidson, B. L. (2008) · The Journal of Neuroscience · doi:10.1523/jneurosci.2390-08.2008 · Cited by 679 · see citing works
Alterations of the microRNA network cause neurodegenerative disease
Hébert, S. S., & De Strooper, B. (2009) · Trends in Neurosciences · doi:10.1016/j.tins.2008.12.003 · Cited by 452 · see citing works
MicroRNA regulation of Alzheimer's Amyloid precursor protein expression
Hébert, S. S., Horré, K., Nicolaï, L., Bergmans, B., Papadopoulou, A. S., Delacourte, A., & De Strooper, B. (2009) · Neurobiology of Disease · doi:10.1016/j.nbd.2008.11.009 · Cited by 436 · see citing works
Flagged first, then by citations
Research works printed but not linked: 62
- [1]Haass C 2004 Take five–BACE and the gamma-secretase quartet conduct Alzheimer's amyloid beta-peptide generation. EMBO J 23 483 488 14749724 PMC1271800
- [2]Theuns J Brouwers N Engelborghs S Sleegers K Bogaerts V 2006 Promoter mutations that increase amyloid precursor-protein expression are associated with Alzheimer disease. Am J Hum Genet 78 936 946 16685645 PMC1474091
- [3]Rovelet-Lecrux A Hannequin D Raux G Le Meur N Laquerriere A 2006 APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy. Nat Genet 38 24 26 16369530
- [4]Podlisny MB Lee G Selkoe DJ 1987 Gene dosage of the amyloid beta precursor protein in Alzheimer's disease. Science 238 669 671 2960019
- [5]Gotz J Schild A Hoerndli F Pennanen L 2004 Amyloid-induced neurofibrillary tangle formation in Alzheimer's disease: insight from transgenic mouse and tissue-culture models. Int J Dev Neurosci 22 453 465 15465275
- [6]Gotz J Ittner LM Schonrock N Cappai R 2008 An update on the toxicity of Abeta in Alzheimer's disease. Neuropsychiatr Dis Treat 4 1033 1042 19337449 PMC2646638
- [7]Gotz J Deters N Doldissen A Bokhari L Ke Y 2007 A decade of tau transgenic animal models and beyond. Brain Pathol 17 91 103 17493043 PMC8095624
- [8]Sturchler-Pierrat C Abramowski D Duke M Wiederhold KH Mistl C 1997 Two amyloid precursor protein transgenic mouse models with Alzheimer disease-like pathology. Proc Natl Acad Sci U S A 94 13287 13292 9371838 PMC24301
- [11]Lau P de Strooper B 2010 Dysregulated microRNAs in neurodegenerative disorders. Semin Cell Dev Biol 20080199
- [12]Wang WX Rajeev BW Stromberg AJ Ren N Tang G 2008 The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J Neurosci 28 1213 1223 18234899 PMC2837363
- [13]Hebert SS Horre K Nicolai L Papadopoulou AS Mandemakers W 2008 Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proc Natl Acad Sci U S A 105 6415 6420 18434550 PMC2359789
- [15]Fath T Ke YD Gunning P Gotz J Ittner LM 2009 Primary support cultures of hippocampal and substantia nigra neurons. Nat Protoc 4 78 85 19131959
- [16]Ferrari A Hoerndli F Baechi T Nitsch RM Gotz J 2003 beta-Amyloid induces paired helical filament-like tau filaments in tissue culture. J Biol Chem 278 40162 40168 12893817
- [17]Habicht G Haupt C Friedrich RP Hortschansky P Sachse C 2007 Directed selection of a conformational antibody domain that prevents mature amyloid fibril formation by stabilizing Abeta protofibrils. Proc Natl Acad Sci U S A 104 19232 19237 18042730 PMC2148273
- [18]Eckert A Hauptmann S Scherping I Meinhardt J Rhein V 2008 Oligomeric and fibrillar species of beta-amyloid (A beta 42) both impair mitochondrial function in P301L tau transgenic mice. J Mol Med 86 1255 1267 18709343
- [19]Schmittgen TD Livak KJ 2008 Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3 1101 1108 18546601
- [20]Biben C Harvey RP 1997 Homeodomain factor Nkx2-5 controls left/right asymmetric expression of bHLH gene eHand during murine heart development. Genes Dev 11 1357 1369 9192865
- [21]Lewis BP Burge CB Bartel DP 2005 Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120 15 20 15652477
- [23]Huang da W Sherman BT Lempicki RA 2009 Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4 44 57 19131956
- [24]Kanehisa M Goto S 2000 KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28 27 30 10592173 PMC102409
- [26]Gotz J Ittner LM Fandrich M Schonrock N 2008 Is tau aggregation toxic or protective: a sensible question in the absence of sensitive methods? J Alzheimers Dis 14 423 429 18688093
- [29]Gotz J Schonrock N Vissel B Ittner LM 2009 Alzheimer's disease selective vulnerability and modeling in transgenic mice. J Alzheimers Dis 18 243 251 19584440
- [30]Van Dam D Vloeberghs E Abramowski D Staufenbiel M De Deyn PP 2005 APP23 mice as a model of Alzheimer's disease: an example of a transgenic approach to modeling a CNS disorder. CNS Spectr 10 207 222 15744222
- [31]Van Dam D D'Hooge R Staufenbiel M Van Ginneken C Van Meir F 2003 Age-dependent cognitive decline in the APP23 model precedes amyloid deposition. Eur J Neurosci 17 388 396 12542676
- [32]Fineberg SK Kosik KS Davidson BL 2009 MicroRNAs potentiate neural development. Neuron 64 303 309 19914179
- [33]Nunez-Iglesias J Liu CC Morgan TE Finch CE Zhou XJ 2010 Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PLoS One 5 e8898 20126538 PMC2813862
- [34]Lukiw WJ 2007 Micro-RNA speciation in fetal, adult and Alzheimer's disease hippocampus. Neuroreport 18 297 300 17314675
- [35]Sethi P Lukiw WJ 2009 Micro-RNA abundance and stability in human brain: specific alterations in Alzheimer's disease temporal lobe neocortex. Neurosci Lett 459 100 104 19406203
- [36]Kim J Inoue K Ishii J Vanti WB Voronov SV 2007 A MicroRNA feedback circuit in midbrain dopamine neurons. Science 317 1220 1224 17761882 PMC2782470
- [37]Schaefer A O'Carroll D Tan CL Hillman D Sugimori M 2007 Cerebellar neurodegeneration in the absence of microRNAs. J Exp Med 204 1553 1558 17606634 PMC2118654
- [38]Bilen J Liu N Burnett BG Pittman RN Bonini NM 2006 MicroRNA pathways modulate polyglutamine-induced neurodegeneration. Mol Cell 24 157 163 17018300
- [40]Johnson R Zuccato C Belyaev ND Guest DJ Cattaneo E 2008 A microRNA-based gene dysregulation pathway in Huntington's disease. Neurobiol Dis 29 438 445 18082412
- [41]Perkins DO Jeffries CD Jarskog LF Thomson JM Woods K 2007 microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder. Genome Biol 8 R27 17326821 PMC1852419
- [42]Kuhn DE Nuovo GJ Martin MM Malana GE Pleister AP 2008 Human chromosome 21-derived miRNAs are overexpressed in down syndrome brains and hearts. Biochem Biophys Res Commun 370 473 477 18387358 PMC2585520
- [43]Thomson JM Newman M Parker JS Morin-Kensicki EM Wright T 2006 Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes Dev 20 2202 2207 16882971 PMC1553203
- [44]Ebhardt HA Tsang HH Dai DC Liu Y Bostan B 2009 Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. Nucleic Acids Res 37 2461 2470 19255090 PMC2677864
- [45]Jones MR Quinton LJ Blahna MT Neilson JR Fu S 2009 Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nat Cell Biol 11 1157 1163 19701194 PMC2759306
- [46]Katoh T Sakaguchi Y Miyauchi K Suzuki T Kashiwabara S 2009 Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23 433 438 19240131 PMC2648654
- [47]Winter J Jung S Keller S Gregory RI Diederichs S 2009 Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 11 228 234 19255566
- [48]Gatfield D Le Martelot G Vejnar CE Gerlach D Schaad O 2009 Integration of microRNA miR-122 in hepatic circadian gene expression. Genes Dev 23 1313 1326 19487572 PMC2701584
- [49]Chatterjee S Grosshans H 2009 Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 461 546 549 19734881
- [50]Diederichs S Haber DA 2007 Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell 131 1097 1108 18083100
- [51]Schratt G 2009 microRNAs at the synapse. Nat Rev Neurosci 10 842 849 19888283
- [52]Nelson PT Wilfred BR 2009 In situ hybridization is a necessary experimental complement to microRNA (miRNA) expression profiling in the human brain. Neurosci Lett 466 69 72 19393719 PMC3171000
- [53]Mattick JS Makunin IV 2005 Small regulatory RNAs in mammals. Hum Mol Genet 14 Spec No 1 R121 132 15809264
- [54]Shibata M Kurokawa D Nakao H Ohmura T Aizawa S 2008 MicroRNA-9 modulates Cajal-Retzius cell differentiation by suppressing Foxg1 expression in mouse medial pallium. J Neurosci 28 10415 10421 18842901 PMC6671033
- [55]Zhao C Sun G Li S Shi Y 2009 A feedback regulatory loop involving microRNA-9 and nuclear receptor TLX in neural stem cell fate determination. Nat Struct Mol Biol 16 365 371 19330006 PMC2667220
- [56]Leucht C Stigloher C Wizenmann A Klafke R Folchert A 2008 MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary. Nat Neurosci 11 641 648 18454145
- [57]Hallbergson AF Gnatenco C Peterson DA 2003 Neurogenesis and brain injury: managing a renewable resource for repair. J Clin Invest 112 1128 1133 14561695 PMC213498
- [58]Jin K Peel AL Mao XO Xie L Cottrell BA 2004 Increased hippocampal neurogenesis in Alzheimer's disease. Proc Natl Acad Sci U S A 101 343 347 14660786 PMC314187
- [59]Young KF Pasternak SH Rylett RJ 2009 Oligomeric aggregates of amyloid beta peptide 1-42 activate ERK/MAPK in SH-SY5Y cells via the alpha7 nicotinic receptor. Neurochem Int 55 796 801 19666073
- [60]Dineley KT Westerman M Bui D Bell K Ashe KH 2001 Beta-amyloid activates the mitogen-activated protein kinase cascade via hippocampal alpha7 nicotinic acetylcholine receptors: In vitro and in vivo mechanisms related to Alzheimer's disease. J Neurosci 21 4125 4133 11404397 PMC6762764
- [61]Hsiao K Chapman P Nilsen S Eckman C Harigaya Y 1996 Correlative memory deficits, Abeta elevation, and amyloid plaques in transgenic mice. Science 274 99 102 8810256
- [62]Chapman PF White GL Jones MW Cooper-Blacketer D Marshall VJ 1999 Impaired synaptic plasticity and learning in aged amyloid precursor protein transgenic mice. Nat Neurosci 2 271 276 10195221
- [63]Guerreiro N Staufenbiel M Gomez-Mancilla B 2008 Proteomic 2-D DIGE profiling of APP23 transgenic mice brain from pre-plaque and plaque phenotypes. J Alzheimers Dis 13 17 30 18334753
- [64]David DC Ittner LM Gehrig P Nergenau D Shepherd C 2006 Beta-amyloid treatment of two complementary P301L tau-expressing Alzheimer's disease models reveals similar deregulated cellular processes. Proteomics 6 6566 6577 17111439
- [65]Lubec G Nonaka M Krapfenbauer K Gratzer M Cairns N 1999 Expression of the dihydropyrimidinase related protein 2 (DRP-2) in Down syndrome and Alzheimer's disease brain is downregulated at the mRNA and dysregulated at the protein level. J Neural Transm Suppl 57 161 177 10666674
- [66]Sizova D Charbaut E Delalande F Poirier F High AA 2007 Proteomic analysis of brain tissue from an Alzheimer's disease mouse model by two-dimensional difference gel electrophoresis. Neurobiol Aging 28 357 370 16519965
- [67]Vercauteren FG Clerens S Roy L Hamel N Arckens L 2004 Early dysregulation of hippocampal proteins in transgenic rats with Alzheimer's disease-linked mutations in amyloid precursor protein and presenilin 1. Brain Res Mol Brain Res 132 241 259 15582162
- [68]Gu Y Hamajima N Ihara Y 2000 Neurofibrillary tangle-associated collapsin response mediator protein-2 (CRMP-2) is highly phosphorylated on Thr-509, Ser-518, and Ser-522. Biochemistry 39 4267 4275 10757975
- [69]Yoshida H Watanabe A Ihara Y 1998 Collapsin response mediator protein-2 is associated with neurofibrillary tangles in Alzheimer's disease. J Biol Chem 273 9761 9768 9545313
- [70]Kai ZS Pasquinelli AE 2010 MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat Struct Mol Biol 17 5 10 20051982 PMC6417416
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- Authors
- Schonrock, N., Ke, Y. D., Humphreys, D., Staufenbiel, M., Ittner, L. M., Preiss, T., & Götz, J.
- Affiliations
- The University of Sydney (AU)
- Victor Chang Cardiac Research Institute (AU)
- Novartis (Switzerland) (CH)
- Corresponding author
- Götz, Jürgen
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2010-06-11
- Volume
- 5
- Issue
- 6
- Pages
- e11070
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC2884018
- OpenAlex
- W1993576110
- Cited by
- 211
- References
- 8
- Citations by year
- 2026: 3 · 2025: 3 · 2024: 16 · 2023: 6 · 2022: 10 · 2021: 5 · 2020: 17 · 2019: 13 · 2018: 9 · 2017: 12 · 2016: 10 · 2015: 18 · 2014: 22 · 2013: 19 · 2012: 26
- FWCI
- 14.52
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- ANU Open Research (Australian National University) (submittedVersion, cc-by)
- UNSWorks (University of New South Wales, Sydney, Australia) (submittedVersion, cc-by)
- Funders
- GlaxoSmithKline
- University of Sydney
- Medical Research Council
- Australian Research Council
- National Health and Medical Research Council
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- Alzheimer's disease, amyloid-beta, microRNA dysregulation, hippocampus, APP23 mice, amyloid plaques, miRNA target genes, neurodegeneration, non-coding RNA regulation
- MeSH terms
- Alzheimer Disease, Animals, Immunohistochemistry, Mice, Inbred C57BL, Mice, Transgenic, RNA, Messenger, Polymerase Chain Reaction, Amyloid beta-Peptides, Mice
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