Cited by 179Aquaculture disease management and microbiotaMicrobial Community Ecology and PhysiologyAquaculture Nutrition and Growth

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Bacterial Population in Intestines of the Black Tiger Shrimp (Penaeus monodon) under Different Growth Stages

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Rungrassamee, Wanilada, Klanchui, Amornpan, Chaiyapechara, Sage, Maibunkaew, Sawarot, Tangphatsornruang, Sithichoke, Jiravanichpaisal, Pikul, Karoonuthaisiri, Nitsara·2013·PLoS ONE

DOI 10.1371/journal.pone.0060802PMC PMC3618293

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Abstract

Intestinal bacterial communities in aquaculture have been drawn to attention due to potential benefit to their hosts. To identify core intestinal bacteria in the black tiger shrimp (Penaeus monodon), bacterial populations of disease-free shrimp were characterized from intestines of four developmental stages (15-day-old post larvae (PL15), 1- (J1), 2- (J2), and 3-month-old (J3) juveniles) using pyrosequencing, real-time PCR and denaturing gradient gel electrophoresis (DGGE) approaches. A total of 25,121 pyrosequencing reads (reading length = 442±24 bases) were obtained, which were categorized by barcode for PL15 (7,045 sequences), J1 (3,055 sequences), J2 (13,130 sequences) and J3 (1,890 sequences). Bacteria in the phyla Bacteroides, Firmicutes and Proteobacteria were found in intestines at all four growth stages. There were 88, 14, 27, and 20 bacterial genera associated with the intestinal tract of PL15, J1, J2 and J3, respectively. Pyrosequencing analysis revealed that Proteobacteria (class Gammaproteobacteria) was a dominant bacteria group with a relative abundance of 89% for PL15 and 99% for J1, J2 and J3. Real-time PCR assay also confirmed that Gammaproteobacteria had the highest relative abundance in intestines from all growth stages. Intestinal bacterial communities from the three juvenile stages were more similar to each other than that of the PL shrimp based on PCA analyses of pyrosequencing results and their DGGE profiles. This study provides descriptive bacterial communities associated to the black tiger shrimp intestines during these growth development stages in rearing facilities.

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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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Background

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Background
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Background
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“The composition of the crustacean gut micro-biome depends on several internal and external factors such as the developmental stage of the host (e.g. Rungrassamee et al., 2013), host anatomy (e.g. Apprill, 2017) environmental conditions that are either seasonal or sudden and extreme events such as…”
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“Although fingerprinting revealed only OTUs with high abundance, this method is proven to be useful for comparison (Pires et al., 2012; Leite et al., 2014) and dynamics (Ding et al., 2012; Rungrassamee et al., 2013) of bacterial communities in different ecosystems.”
Method
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Background
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BackgroundInfluential
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Authors: Rungrassamee, W., Klanchui, A., Chaiyapechara, S., Maibunkaew, S., Tangphatsornruang, S., Jiravanichpaisal, P., & Karoonuthaisiri, N.
Affiliations: National Center for Genetic Engineering and Biotechnology (TH)
Corresponding author: Karoonuthaisiri, Nitsara
ORCID: Rungrassamee, Wanilada
Chaiyapechara, Sage
Tangphatsornruang, Sithichoke
Karoonuthaisiri, Nitsara
Venue: PLoS ONE
Publisher: Public Library of Science (PLoS)
Published: 2013-04-05
Volume: 8
Issue: 4
Pages: e60802
ISSN: 1932-6203 (ISSN-L)
DOI: 10.1371/journal.pone.0060802
PMC: PMC3618293
OpenAlex: W2020616960
Cited by: 179
References: 77
Citations by year: 2026: 4 · 2025: 13 · 2024: 18 · 2023: 17 · 2022: 18 · 2021: 25 · 2020: 19 · 2019: 11 · 2018: 17 · 2017: 13 · 2016: 9 · 2015: 9 · 2014: 4 · 2013: 1
FWCI: 4.24
Type: journal article
Language: en
Open access: gold
doi.org
Licence: cc-by
creativecommons.org/licenses/by/4.0/ (unspecified)
Locations: PLoS ONE (publishedVersion, cc-by)
Europe PMC (PubMed Central) (publishedVersion, other-oa)
PubMed Central (publishedVersion, cc-by)
PubMed (publishedVersion)
DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Figshare (submittedVersion, cc-by)
Greater South Information System
Funders: Thailand Research Fund (TRG5480014)
Burapha University
National Center for Genetic Engineering and Biotechnology
Topics: Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Life Sciences › Agricultural and Biological Sciences › Aquatic Science › Aquaculture Nutrition and Growth
Keywords: Penaeus monodon, intestinal bacterial community, gut microbiota, growth stages, postlarvae, juveniles, Gammaproteobacteria, Bacteroides, Firmicutes, shrimp aquaculture
MeSH terms: Animals, Bacteria, DNA, Bacterial, Intestines, Larva, Time Factors, Sequence Analysis, DNA, Aquaculture, Principal Component Analysis, Penaeidae

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Bacterial Population in Intestines of the Black Tiger Shrimp (Penaeus monodon) under Different Growth Stages

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