Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 134

The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.

Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway

Hoffman, Lucas R., Richardson, Anthony R., Houston, Laura S., Kulasekara, Hemantha D., Martens-Habbena, Willm, Klausen, Mikkel, Burns, Jane L., Stahl, David A., Hassett, Daniel J., Fang, Ferric C., Miller, Samuel I.·2010·PLoS Pathogens
DOI 10.1371/journal.ppat.1000712
Open this paper in CoChat — free account

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1371/journal.ppat.1000712

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 5 references

Research works printed but not linked: 65

  1. M Giannakis, 2008, Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells., Proc Natl Acad Sci U S A, 105, 4358, 10.1073/pnas.0800668105 · DOI
  2. EE Smith, 2006, Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients., Proc Natl Acad Sci U S A, 103, 8487, 10.1073/pnas.0602138103 · DOI · Paper page
  3. JR Govan, 1996, Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia., Microbiol Rev, 60, 539, 10.1128/MMBR.60.3.539-574.1996 · doi:10.1128/mmbr.60.3.539-574.1996 · Paper page
  4. E Mahenthiralingam, 1994, Nonmotility and phagocytic resistance of Pseudomonas aeruginosa isolates from chronically colonized patients with cystic fibrosis., Infect Immun, 62, 596, 10.1128/IAI.62.2.596-605.1994 · DOI · Paper page
  5. RK Ernst, 2006, The Pseudomonas aeruginosa lipid A deacylase: selection for expression and loss within the cystic fibrosis airway., J Bacteriol, 188, 191, 10.1128/JB.188.1.191-201.2006 · DOI
  6. JL Burns, 1999, Effect of chronic intermittent administration of inhaled tobramycin on respiratory microbial flora in patients with cystic fibrosis., J Infect Dis, 179, 1190, 10.1086/314727 · DOI · Paper page
  7. Z Li, 2005, Longitudinal development of mucoid Pseudomonas aeruginosa infection and lung disease progression in children with cystic fibrosis., Jama, 293, 581, 10.1001/jama.293.5.581 · DOI · Paper page
  8. LR Hoffman, 2009, Pseudomonas aeruginosa lasR mutants are associated with cystic fibrosis lung disease progression., J Cyst Fibros, 8, 66, 10.1016/j.jcf.2008.09.006 · DOI · Paper page
  9. RL Gibson, 2007, Duration of treatment effect after tobramycin solution for inhalation in young children with cystic fibrosis., Pediatr Pulmonol, 42, 610, 10.1002/ppul.20625 · doi:10.1002/ppul.20625
  10. P Salunkhe, 2005, A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance., J Bacteriol, 187, 4908, 10.1128/JB.187.14.4908-4920.2005 · DOI · Paper page
  11. DA D'Argenio, 2007, Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients., Mol Microbiol, 64, 512, 10.1111/j.1365-2958.2007.05678.x · DOI · Paper page
  12. P Tingpej, 2007, Phenotypic characterization of clonal and nonclonal Pseudomonas aeruginosa strains isolated from lungs of adults with cystic fibrosis., J Clin Microbiol, 45, 1697, 10.1128/JCM.02364-06 · DOI
  13. AL Barth, 1996, The high amino-acid content of sputum from cystic fibrosis patients promotes growth of auxotrophic Pseudomonas aeruginosa., J Med Microbiol, 45, 110, 10.1099/00222615-45-2-110 · DOI · Paper page
  14. VE Wagner, 2003, Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment., J Bacteriol, 185, 2080, 10.1128/JB.185.7.2080-2095.2003 · DOI · Paper page
  15. M Toyofuku, 2007, Quorum sensing regulates denitrification in Pseudomonas aeruginosa PAO1., J Bacteriol, 189, 4969, 10.1128/JB.00289-07 · DOI
  16. SS Yoon, 2002, Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis., Dev Cell, 3, 593, 10.1016/S1534-5807(02)00295-2 · DOI · Paper page
  17. KL Palmer, 2007, Membrane-bound nitrate reductase is required for anaerobic growth in cystic fibrosis sputum., J Bacteriol, 189, 4449, 10.1128/JB.00162-07 · DOI
  18. H Grasemann, 1998, Nitric oxide metabolites in cystic fibrosis lung disease., Arch Dis Child, 78, 49, 10.1136/adc.78.1.49 · DOI
  19. H Grasemann, 2006, Inhaled L-arginine improves exhaled nitric oxide and pulmonary function in patients with cystic fibrosis., Am J Respir Crit Care Med, 174, 208, 10.1164/rccm.200509-1439OC · DOI
  20. D Worlitzsch, 2002, Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients., J Clin Invest, 109, 317, 10.1172/JCI0213870 · DOI · Paper page
  21. F Chen, 2006, Competition between oxygen and nitrate respirations in continuous culture of Pseudomonas aeruginosa performing aerobic denitrification., Biotechnol Bioeng, 93, 1069, 10.1002/bit.20812 · DOI
  22. MA Kohanski, 2007, A common mechanism of cellular death induced by bactericidal antibiotics., Cell, 130, 797, 10.1016/j.cell.2007.06.049 · DOI · Paper page
  23. LE Bryan, 1985, Antibiotic uptake and the cytoplasmic membrane., Antibiot Chemother, 36, 103, 10.1159/000410476 · doi:10.1159/000410476
  24. AR Richardson, 2006, The nitrosative stress response of Staphylococcus aureus is required for resistance to innate immunity., Mol Microbiol, 61, 927, 10.1111/j.1365-2958.2006.05290.x · DOI · Paper page
  25. H Arai, 2005, Transcriptional regulation of the flavohemoglobin gene for aerobic nitric oxide detoxification by the second nitric oxide-responsive regulator of Pseudomonas aeruginosa., J Bacteriol, 187, 3960, 10.1128/JB.187.12.3960-3968.2005 · DOI
  26. LR Hoffman, 2006, Selection for Staphylococcus aureus small-colony variants due to growth in the presence of Pseudomonas aeruginosa., Proc Natl Acad Sci U S A, 103, 19890, 10.1073/pnas.0606756104 · DOI · Paper page
  27. M Schuster, 2003, Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis., J Bacteriol, 185, 2066, 10.1128/JB.185.7.2066-2079.2003 · DOI · Paper page
  28. DJ Hassett, 1995, Pseudomonas aeruginosa sodA and sodB mutants defective in manganese- and iron-cofactored superoxide dismutase activity demonstrate the importance of the iron-cofactored form in aerobic metabolism., J Bacteriol, 177, 6330, 10.1128/jb.177.22.6330-6337.1995 · DOI · Paper page
  29. MW Bader, 2003, Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides., Mol Microbiol, 50, 219, 10.1046/j.1365-2958.2003.03675.x · DOI · Paper page
  30. L Zhang, 2000, Interactions of bacterial cationic peptide antibiotics with outer and cytoplasmic membranes of Pseudomonas aeruginosa., Antimicrob Agents Chemother, 44, 3317, 10.1128/AAC.44.12.3317-3321.2000 · DOI · Paper page
  31. DJ Hassett, 1992, Response of Pseudomonas aeruginosa to pyocyanin: mechanisms of resistance, antioxidant defenses, and demonstration of a manganese-cofactored superoxide dismutase., Infect Immun, 60, 328, 10.1128/IAI.60.2.328-336.1992 · DOI · Paper page
  32. DJ Hassett, 2000, A protease-resistant catalase, KatA, released upon cell lysis during stationary phase is essential for aerobic survival of a Pseudomonas aeruginosa oxyR mutant at low cell densities., J Bacteriol, 182, 4557, 10.1128/JB.182.16.4557-4563.2000 · doi:10.1128/jb.182.16.4557-4563.2000
  33. X Wang, 2009, Contribution of oxidative damage to antimicrobial lethality., Antimicrob Agents Chemother, 53, 1395, 10.1128/AAC.01087-08 · DOI · Paper page
  34. S Haussler, 2008, The pseudomonas quinolone signal (PQS) balances life and death in Pseudomonas aeruginosa populations., PLoS Pathog, 4, e1000166, 10.1371/journal.ppat.1000166 · DOI · Paper page
  35. I Albesa, 2004, Oxidative stress involved in the antibacterial action of different antibiotics., Biochem Biophys Res Commun, 317, 605, 10.1016/j.bbrc.2004.03.085 · DOI · Paper page
  36. E O'Regan, 2009, Multiple regulatory pathways associated with high-level ciprofloxacin and multidrug resistance in Salmonella enterica serovar enteritidis: involvement of RamA and other global regulators., Antimicrob Agents Chemother, 53, 1080, 10.1128/AAC.01005-08 · DOI
  37. RL Gibson, 2003, Pathophysiology and management of pulmonary infections in cystic fibrosis., Am J Respir Crit Care Med, 168, 918, 10.1164/rccm.200304-505SO · DOI · Paper page
  38. C Alvarez-Ortega, 2007, Responses of Pseudomonas aeruginosa to low oxygen indicate that growth in the cystic fibrosis lung is by aerobic respiration., Mol Microbiol, 65, 153, 10.1111/j.1365-2958.2007.05772.x · DOI · Paper page
  39. MM Tunney, 2008, Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis., Am J Respir Crit Care Med, 177, 995, 10.1164/rccm.200708-1151OC · DOI · Paper page
  40. H Wu, 2001, Pseudomonas aeruginosa mutations in lasI and rhlI quorum sensing systems result in milder chronic lung infection., Microbiology, 147, 1105, 10.1099/00221287-147-5-1105 · DOI · Paper page
  41. B Tummler, 1997, Infections with Pseudomonas aeruginosa in patients with cystic fibrosis., Behring Inst Mitt, 249
  42. SP Diggle, 2006, 4-quinolone signalling in Pseudomonas aeruginosa: old molecules, new perspectives., Int J Med Microbiol, 296, 83, 10.1016/j.ijmm.2006.01.038 · DOI · Paper page
  43. F Ledgham, 2003, Interactions of the quorum sensing regulator QscR: interaction with itself and the other regulators of Pseudomonas aeruginosa LasR and RhlR., Mol Microbiol, 48, 199, 10.1046/j.1365-2958.2003.03423.x · doi:10.1046/j.1365-2958.2003.03423.x
  44. W Li, 2007, Regulation of carbon and nitrogen utilization by CbrAB and NtrBC two-component systems in Pseudomonas aeruginosa., J Bacteriol, 189, 5413, 10.1128/JB.00432-07 · doi:10.1128/jb.00432-07
  45. L Benov, 1999, Why superoxide imposes an aromatic amino acid auxotrophy on Escherichia coli. The transketolase connection., J Biol Chem, 274, 4202, 10.1074/jbc.274.7.4202 · DOI
  46. RM Fink, 1984, Studies on the possible mechanism of inactivation of phenylalanine hydroxylase by destructive oxygen species., Z Naturforsch [C], 39, 734, 10.1515/znc-1984-7-809 · DOI
  47. E Deziel, 2004, Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication., Proc Natl Acad Sci U S A, 101, 1339, 10.1073/pnas.0307694100 · DOI · Paper page
  48. H Zhu, 2004, Pseudomonas aeruginosa with lasI quorum-sensing deficiency during corneal infection., Invest Ophthalmol Vis Sci, 45, 1897, 10.1167/iovs.03-0980 · DOI
  49. JL Fothergill, 2007, Widespread pyocyanin over-production among isolates of a cystic fibrosis epidemic strain., BMC Microbiol, 7, 45, 10.1186/1471-2180-7-45 · DOI · Paper page
  50. AM Lujan, 2007, Quorum-sensing-deficient (lasR) mutants emerge at high frequency from a Pseudomonas aeruginosa mutS strain., Microbiology, 153, 225, 10.1099/mic.0.29021-0 · DOI
  51. K Heurlier, 2005, Quorum-sensing-negative (lasR) mutants of Pseudomonas aeruginosa avoid cell lysis and death., J Bacteriol, 187, 4875, 10.1128/JB.187.14.4875-4883.2005 · DOI · Paper page
  52. V Denervaud, 2004, Characterization of cell-to-cell signaling-deficient Pseudomonas aeruginosa strains colonizing intubated patients., J Clin Microbiol, 42, 554, 10.1128/JCM.42.2.554-562.2004 · DOI
  53. S Cabrol, 2003, Transcription of quorum-sensing system genes in clinical and environmental isolates of Pseudomonas aeruginosa., J Bacteriol, 185, 7222, 10.1128/JB.185.24.7222-7230.2003 · DOI
  54. KM Sandoz, 2007, Social cheating in Pseudomonas aeruginosa quorum sensing., Proc Natl Acad Sci U S A, 104, 15876, 10.1073/pnas.0705653104 · DOI · Paper page
  55. SP Diggle, 2007, Cooperation and conflict in quorum-sensing bacterial populations., Nature, 450, 411, 10.1038/nature06279 · DOI · Paper page
  56. V Dekimpe, 2009, Revisiting the quorum-sensing hierarchy in Pseudomonas aeruginosa: the transcriptional regulator RhlR regulates LasR-specific factors., Microbiology, 155, 712, 10.1099/mic.0.022764-0 · DOI · Paper page
  57. JF Ma, 1998, Cloning and characterization of the Pseudomonas aeruginosa zwf gene encoding glucose-6-phosphate dehydrogenase, an enzyme important in resistance to methyl viologen (paraquat)., J Bacteriol, 180, 1741, 10.1128/JB.180.7.1741-1749.1998 · DOI
  58. L Silo-Suh, 2005, Adaptations of Pseudomonas aeruginosa to the cystic fibrosis lung environment can include deregulation of zwf, encoding glucose-6-phosphate dehydrogenase., J Bacteriol, 187, 7561, 10.1128/JB.187.22.7561-7568.2005 · doi:10.1128/jb.187.22.7561-7568.2005
  59. C Kohler, 2008, A defect in menadione biosynthesis induces global changes in gene expression in Staphylococcus aureus., J Bacteriol, 190, 6351, 10.1128/JB.00505-08 · DOI
  60. C von Eiff, 2006, Phenotype microarray profiling of Staphylococcus aureus menD and hemB mutants with the small-colony-variant phenotype., J Bacteriol, 188, 687, 10.1128/JB.188.2.687-693.2006 · DOI
  61. G Hu, 2008, Metabolic adaptation in Cryptococcus neoformans during early murine pulmonary infection., Mol Microbiol
  62. R Bryk, 2008, Selective killing of nonreplicating mycobacteria., Cell Host Microbe, 3, 137, 10.1016/j.chom.2008.02.003 · DOI · Paper page
  63. NT Liberati, 2006, An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants., Proc Natl Acad Sci U S A, 103, 2833, 10.1073/pnas.0511100103 · DOI · Paper page
  64. TT Hoang, 1998, A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants., Gene, 212, 77, 10.1016/S0378-1119(98)00130-9 · DOI · Paper page
  65. B Weiss, 2001, Endonuclease V of Escherichia coli prevents mutations from nitrosative deamination during nitrate/nitrite respiration., Mutat Res, 461, 301, 10.1016/S0921-8777(00)00062-8 · DOI

Cited by

See all 134

Metadata

Authors
Hoffman, L. R., Richardson, A. R., Houston, L. S., Kulasekara, H. D., Martens-Habbena, W., Klausen, M., Burns, J. L., Stahl, D. A., Hassett, D. J., Fang, F. C., & Miller, S. I.
Venue
PLoS Pathogens
Publisher
Public Library of Science (PLoS)
Published
2010-01-08
Volume
6
Issue
1
Pages
e1000712
ISSN
1553-7374
DOI
10.1371/journal.ppat.1000712
Cited by
134
References
5
Language
en
Licence
creativecommons.org/licenses/by/4.0/ (unspecified)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway. https://app.cochat.ai/papers/10.1371/journal.ppat.1000712
The paper
Hoffman, L. R., Richardson, A. R., Houston, L. S., Kulasekara, H. D., Martens-Habbena, W., Klausen, M., Burns, J. L., Stahl, D. A., Hassett, D. J., Fang, F. C., & Miller, S. I. (2010). Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway. PLoS Pathogens. https://doi.org/10.1371/journal.ppat.1000712

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.