A Genome Assembly of the Barley ‘Transformation Reference’ Cultivar Golden Promise

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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GMAP: A genomic mapping and alignment program for mRNA and EST sequences

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BUSCO applications from quality assessments to gene prediction and phylogenomics

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A physical, genetic and functional sequence assembly of the barley genome

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A chromosome conformation capture ordered sequence of the barley genome

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AUGUSTUS: a web server for gene finding in eukaryotes

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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

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CRISPR for Crop Improvement: An Update Review

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Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system

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Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease

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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

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TREP: a database for Triticeae repetitive elements

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Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries

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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

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Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

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Patterns of CRISPR/Cas9 activity in plants, animals and microbes

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Efficient generation of transgenic barley: The way forward to modulate plant–microbe interactions

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Efficient and accurate detection of splice junctions from RNA-seq with Portcullis

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CRISPR/Cas9 Mediated Genome Engineering for Improvement of Horticultural Crops

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Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources

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Comparison of Agrobacterium -mediated transformation of four barley cultivars using the GFP and GUS reporter genes

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BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

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Simultaneous gene finding in multiple genomes

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In Situ Hi-C for Plants: An Improved Method to Detect Long-Range Chromatin Interactions

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W2RAP: a pipeline for high quality, robust assemblies of large complex genomes from short read dataPreprint

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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source toolsPreprint

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A Method to Simultaneously Construct up to 12 Differently Sized Illumina Nextera Long Mate Pair Libraries with Reduced DNA Input, Time, and Cost

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Efficient and accurate detection of splice junctions from RNAseq with PortcullisPreprint

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Method for hull‐less barley transformation and manipulation of grain mixed‐linkage beta‐glucan

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The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

Radchuk, V. V., Sharma, R. K., Кирилловна, П. Е., Radchuk, R., Weier, D., Munz, E., Schreiber, M., Mascher, M., Stein, N., Wicker, T., et al. (2019) · The Plant Journal · doi:10.1111/tpj.14363 · Cited by 10 · see citing works

Highly efficient Agrobacterium tumefaciens-mediated transformation of elite Egyptian barley cultivars.

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The barley pan-genome reveals the hidden legacy of mutation breeding

Jayakodi, M., Padmarasu, S., Haberer, G., Bonthala, V. S., Gundlach, H., Monat, C., Lux, T., Kamal, N., Lang, D., Himmelbach, A., et al. (2020) · Nature · doi:10.1038/s41586-020-2947-8 · Cited by 565 · see citing works

Plant pangenomes for crop improvement, biodiversity and evolution

Schreiber, M., Jayakodi, M., Stein, N., & Mascher, M. (2024) · Nature Reviews Genetics · doi:10.1038/s41576-024-00691-4 · Cited by 158 · see citing works

Building pan-genome infrastructures for crop plants and their use in association genetics

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Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease

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Nutrient regulation of lipochitooligosaccharide recognition in plants via NSP1 and NSP2

Li, X.-R., Sun, J., Albinsky, D., Zarrabian, D., Hull, R., Lee, T. H., Jarratt-Barnham, E., Chiu, C. H., Jacobsen, A., Soumpourou, E., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-33908-3 · Cited by 90 · see citing works

Genome editing in cereal crops: an overview

Matres, J. M., Hilscher, J., Datta, A., Armario-Nájera, V., Baysal, C., He, W., Huang, X., Zhu, C., کامران, ر. و., Trijatmiko, K. R., et al. (2021) · Transgenic Research · doi:10.1007/s11248-021-00259-6 · Cited by 88 · see citing works

The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

Bziuk, N., Maccario, L., Straube, B., Wehner, G., Sørensen, S. J., Schikora, A., & Smalla, K. (2021) · Environmental Microbiome · doi:10.1186/s40793-021-00389-8 · Cited by 81 · see citing works

History and future perspectives of barley genomics

Sato, K. (2020) · DNA Research · doi:10.1093/dnares/dsaa023 · Cited by 74 · see citing works

The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics

Bettgenhaeuser, J., Hernández‐Pinzón, I., Dawson, A. M., Gardiner, M., Green, P., Taylor, J., Smoker, M., Ferguson, J. N., Emmrich, P. M. F., Hubbard, A., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27288-3 · Cited by 64 · see citing works

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways

Tello-Ruiz, M. K., Jaiswal, P., & Ware, D. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2067-0_5 · Cited by 61 · see citing works

FLOWERING LOCUS T4 delays flowering and decreases floret fertility in barley

Pieper, R., Tomé, F., Pankin, A., & von Korff, M. (2020) · Journal of Experimental Botany · doi:10.1093/jxb/eraa466 · Cited by 57 · see citing works

Comprehensive dissection of primary metabolites in response to diverse abiotic stress in barley at seedling stage

Zhao, H., Ni, S., Cai, S., & Zhang, G. (2021) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2021.01.048 · Cited by 52 · see citing works

What Are We Learning from Plant Pangenomes?

Jayakodi, M., Shim, H., & Mascher, M. (2024) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-090823-015358 · Cited by 50 · see citing works

Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5

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A reference-guided TILLING by amplicon-sequencing platform supports forward and reverse genetics in barley

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Multilayered regulation of developmentally programmed pre-anthesis tip degeneration of the barley inflorescence

Shanmugaraj, N., Rajaraman, J., Kale, S. M., Kamal, R., Huang, Y., Thirulogachandar, V., Garibay‐Hernández, A., Budhagatapalli, N., Moya, Y. A. T., Hajirezaei, M., et al. (2023) · The Plant Cell · doi:10.1093/plcell/koad164 · Cited by 38 · see citing works

Genotypic Variation of Nitrogen Use Efficiency and Amino Acid Metabolism in Barley

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Chromosome-scale assembly of wild barley accession “OUH602”

Sato, K., Mascher, M., Himmelbach, A., Haberer, G., Spannagl, M., & Stein, N. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab244 · Cited by 32 · see citing works

A lineage-specific Exo70 is required for receptor kinase–mediated immunity in barley

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Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I

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Deciphering genotype-by-environment interaction in barley genotypes using different adaptability and stability methods

Pour‐Aboughadareh, A., Barati, A., Gholipoor, A., Zali, H., Marzooghian, A., Koohkan, S. A., Shahbazi‐Homonloo, K., & Houseinpour, A. (2023) · Journal of Crop Science and Biotechnology · doi:10.1007/s12892-023-00199-z · Cited by 28 · see citing works

A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study

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Gene editing for barley grain quality improvement

Garcia‐Gimenez, G., & Jobling, S. A. (2021) · Journal of Cereal Science · doi:10.1016/j.jcs.2021.103394 · Cited by 22 · see citing works

Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics

Sakkour, A., Mascher, M., Himmelbach, A., Haberer, G., Lux, T. M., Spannagl, M., Stein, N., Kawamoto, S., & Sato, K. (2022) · DNA Research · doi:10.1093/dnares/dsac001 · Cited by 22 · see citing works

Unraveling the genetics of polyamine metabolism in barley for senescence-related crop improvement

Tanwar, U. K., Stolarska, E., Paluch-Lubawa, E., Mattoo, A. K., Arasimowicz‐Jelonek, M., & Sobieszczuk‐Nowicka, E. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.09.006 · Cited by 21 · see citing works

Barley HOMOCYSTEINE METHYLTRANSFERASE 2 confers drought tolerance by improving polyamine metabolism

Qiu, C., Ma, Y., Wang, Q., Fu, M., Li, C., Wang, Y., & Wu, F. (2023) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiad333 · Cited by 21 · see citing works

An Induced Mutation in HvRECQL4 Increases the Overall Recombination and Restores Fertility in a Barley HvMLH3 Mutant Background

Arrieta, M., Macaulay, M., Colas, I., Schreiber, M., Shaw, P. D., Waugh, R., & Ramsay, L. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.706560 · Cited by 15 · see citing works

Pan-genome analysis of three main Chinese chestnut varieties

Hu, G., Cheng, L., Cheng, Y., Mao, W., Qiao, Y., & Lan, Y. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.916550 · Cited by 20 · see citing works

Barley’s Second Spring as a Model Organism for Chloroplast Research

Rotasperti, L., Sansoni, F., Mizzotti, C., Tadini, L., & Pesaresi, P. (2020) · Plants · doi:10.3390/plants9070803 · Cited by 19 · see citing works

Genome resequencing and transcriptome profiling reveal molecular evidence of tolerance to water deficit in barley

Qiu, C., Ma, Y., Liu, W., Zhang, S., Wang, Y., Cai, S., Zhang, G., Chater, C., Chen, Z., & Wu, F. (2022) · Journal of Advanced Research · doi:10.1016/j.jare.2022.09.008 · Cited by 19 · see citing works

Genetic resources and precise gene editing for targeted improvement of barley abiotic stress tolerance

Karunarathne, S., Walker, E., Sharma, D., Li, C., & Han, Y. (2023) · Journal of Zhejiang University-SCIENCE B · doi:10.1631/jzus.b2200552 · Cited by 18 · see citing works

Systematic identification and expression profiles of the BAHD superfamily acyltransferases in barley (Hordeum vulgare)

Yuan, Z., Yang, H., Pan, L., Zhao, W., Liang, L., Anicet, G., Tucker, M. R., & Xu, D. (2022) · Scientific Reports · doi:10.1038/s41598-022-08983-7 · Cited by 17 · see citing works

CRISPR/Cas9-Induced Loss-of-Function Mutation in the Barley Mitogen-Activated Protein Kinase 6 Gene Causes Abnormal Embryo Development Leading to Severely Reduced Grain Germination and Seedling Shootless Phenotype

Křenek, P., Chubar, E., Vadovič, P., Ohnoutková, L., Vlčko, T., Bergougnoux, V., Cápal, P., Ovečka, M., & Šamaj, J. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.670302 · Cited by 16 · see citing works

Barley TAPETAL DEVELOPMENT and FUNCTION1 (HvTDF1) gene reveals conserved and unique roles in controlling anther tapetum development in dicot and monocot plants

Hua, M., Yin, W., Gómez, J. F., Tidy, A. C., Xing, G., Zong, J., Shi, S., & Wilson, Z. A. (2023) · New Phytologist · doi:10.1111/nph.19161 · Cited by 16 · see citing works

Mutation of barley HvPDIL5-1 improves resistance to yellow mosaic virus disease without growth or yield penalties

Cheng, C., Kan, J., Li, S., Jiang, C., He, X., Shen, H., Xu, R., Li, B., Feng, Z., & Yang, P. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.1018379 · Cited by 15 · see citing works

Genetic analysis of the barley variegation mutant, grandpa1.a

Yang, S., Overlander, M., & Fiedler, J. D. (2021) · BMC Plant Biology · doi:10.1186/s12870-021-02915-9 · Cited by 14 · see citing works

Genome Assembly of the Canadian two-row Malting Barley cultivar AAC Synergy

Xu, W. W., Tucker, J. R., Bekele, W. A., You, F. M., Fu, Y., Khanal, R. R., Yao, Z., Singh, J., Boyle, B., Beattie, A. D., et al. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab031 · Cited by 14 · see citing works

Triticeae crop genome biology: an endless frontier

Gao, Z., Bian, J., Lü, F., Jiao, Y., & He, H. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1222681 · Cited by 14 · see citing works

Generating homozygous mutant populations of barley microspores by ethyl methanesulfonate treatment

Huang, L., Gao, G., Jiang, C., Guo, G., He, Q., Zong, Y., Liu, C., & Yang, P. (2023) · aBIOTECH · doi:10.1007/s42994-023-00108-6 · Cited by 13 · see citing works

Breeding for durable resistance against biotrophic fungal pathogens using transgenes from wheat

Camenzind, M., Koller, T., Armbruster, C., Jung, E., Brunner, S., Herren, G., & Keller, B. (2024) · Molecular Breeding · doi:10.1007/s11032-024-01451-2 · Cited by 13 · see citing works

Functional analysis on the role of HvHKT1.4 in barley (Hordeum vulgare L.) salinity tolerance

Zhu, J., Sun, C., Zhang, Y., Zhang, M., Zhao, C., Lv, C., Guo, B., Wang, F., Zhou, M., & Xu, R. (2024) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2024.109061 · Cited by 13 · see citing works

Colocalization of genetic regions that confer resistance/susceptibility against Puccinia species and association with Pyrenophora teres loci within the barley genome

Clare, S. J., Novakazi, F., Hayes, P. M., Moscou, M., & Brueggeman, R. S. (2024) · Frontiers in Agronomy · doi:10.3389/fagro.2024.1451281 · Cited by 13 · see citing works

Advances in barley germplasm diversity characterization through next-generation sequencing approach

Panahi, B., Gharajeh, N. H., & Jalaly, H. M. (2024) · Genetic Resources and Crop Evolution · doi:10.1007/s10722-024-02196-9 · Cited by 11 · see citing works

Transcriptome Analysis Reveals Genetic Factors Related to Callus Induction in Barley

Xu, Z., Wang, F., Tu, Y., Xu, Y., Shen, Q., & Zhang, G. (2022) · Agronomy · doi:10.3390/agronomy12030749 · Cited by 11 · see citing works

Genome-wide profiling of genetic variations reveals the molecular basis of aluminum stress adaptation in Tibetan wild barley

Qiu, C., Ma, Y., Gao, Z., Sreesaeng, J., Zhang, S., Liu, W., Ahmed, I. M., Cai, S., Wang, Y., Zhang, G., et al. (2023) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2023.132541 · Cited by 9 · see citing works

Core promoterome of barley embryo

Pavlu, S., Nikumbh, S., Kovačik, M., An, T., Lenhard, B., Šimková, H., & Navrátilová, P. (2023) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2023.12.003 · Cited by 9 · see citing works

The Barley HvWRKY6 Transcription Factor Is Required for Resistance Against Pyrenophora teres f. teres

Tamang, P., Richards, J. K., Solanki, S., Ameen, G., Poudel, R. S., Deka, P., Effertz, K. M., Clare, S. J., Hegstad, J. B., Bezbaruah, A. N., et al. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2020.601500 · Cited by 8 · see citing works

High Salt Levels Reduced Dissimilarities in Root-Associated Microbiomes of Two Barley Genotypes

Nacer, A., Yan, Z., Bouherama, A., Schmitz, L., Amrane, S. O., Franken, C., Schneijderberg, M., Cheng, X., Amrani, S., Geurts, R., et al. (2022) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-12-21-0294-fi · Cited by 8 · see citing works

Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entryPreprint

Barakate, A., Orr, J., Schreiber, M., Colas, I., Lewandowska, D., McCallum, N., MacAulay, M. A., Morris, J., Arrieta, M., Hedley, P. E., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.20.051425 · Cited by 8 · see citing works

The basic helix–loop–helix (bHLH) transcription factor DTT1 is part of a paired key that unlocks the tapetum transition in barley anther development

Hua, M., Yin, W., Tidy, A. C., Gómez, J. F., Li, H., Shi, S., Xing, G., Zong, J., & Wilson, Z. A. (2025) · The Plant Cell · doi:10.1093/plcell/koaf230 · Cited by 7 · see citing works

High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · BMC Plant Biology · doi:10.1186/s12870-024-05303-1 · Cited by 7 · see citing works

A Novel Mutator-Like Transposable Elements With Unusual Structure and Recent Transpositions in Barley (Hordeum vulgare)

Gao, D., Caspersen, A. M., Hu, G., Bockelman, H. E., & Chen, X. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.904619 · Cited by 5 · see citing works

Downregulation of Barley Regulator of Telomere Elongation Helicase 1 Alters the Distribution of Meiotic Crossovers

Barakate, A., Arrieta, M., Macaulay, M., Vivera, S., Davidson, D., Stephens, J., Orr, J., Schreiber, M., Ramsay, L., Halpin, C., et al. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.745070 · Cited by 4 · see citing works

Breeding allelopathy in cereal rye for weed suppression

Rebong, D. B., Inoa, S. H., Moore, V. M., Reberg-Horton, C. S., Mirsky, S. B., Murphy, J. P., & León, R. G. (2023) · Weed Science · doi:10.1017/wsc.2023.64 · Cited by 5 · see citing works

Genetic Diversity for Barley Adaptation to Stressful Environments

Fricano, A., Battaglia, R., Mica, E., Tondelli, A., Crosatti, C., Guerra, D., & Cattivelli, L. (2021) · Springer eBooks · doi:10.1007/978-3-030-75875-2_4 · Cited by 4 · see citing works

Comparative genomics analysis and transposon mutagenesis provides new insights into high menaquinone-7 biosynthetic potential of Bacillus subtilis natto

Jiang, C., Zhao, G., Wang, H., Zheng, W., Zheng, Z., Wang, L., & Zheng, Z. (2024) · Gene · doi:10.1016/j.gene.2024.148264 · Cited by 4 · see citing works

Exploration of barley (Hordeum vulgareL.) accessions for yield and yield components from diverse agro‐ecological zones of Ethiopia

Hailemariam, M., Feyissa, T., Alemu, T., & Melkie, Y. (2024) · Agrosystems Geosciences & Environment · doi:10.1002/agg2.70005 · Cited by 3 · see citing works

Wheat Sequencing: The Pan-Genome and Opportunities for Accelerating Breeding

N’Diaye, A., Walkowiak, S., & Pozniak, C. J. (2023) · Compendium of plant genomes · doi:10.1007/978-3-031-38294-9_14 · Cited by 3 · see citing works

Rapid development of naked malting barley germplasm through targeted mutagenesis

Hisano, H., Sakai, H., Hamaoka, M., Munemori, H., Abe, F., Meints, B. M., Sato, K., & Hayes, P. M. (2025) · Molecular Breeding · doi:10.1007/s11032-025-01553-5 · Cited by 3 · see citing works

Potential Breeding Strategies for Developing Disease-Resistant Barley: Progress, Challenges, and Applications

Mahesha, H. S., Saini, R. P., Singh, T., Singh, A., & Srinivasan, R. (2022) · Springer eBooks · doi:10.1007/978-981-19-3120-8_9 · Cited by 3 · see citing works

A Multigraph-Based Representation of Hi-C Data

Makai, D., Cseh, A., Sepsi, A., & Makai, S. (2022) · Genes · doi:10.3390/genes13122189 · Cited by 2 · see citing works

Success Stories of Doubled Haploids

Rawte, S., Diwan, G., Suprasanna, P., & Jha, Z. (2025) · Springer eBooks · doi:10.1007/978-981-96-2339-6_6 · Cited by 2 · see citing works

Discovery of DNA polymorphisms via genome-resequencing and development of molecular markers between two barley cultivars

Zhang, Y., Shi, J., Shen, C., To, V.-T., Shi, Q., Ye, L., Shi, J., Zhang, D., & Chen, W. (2022) · Plant Cell Reports · doi:10.1007/s00299-022-02920-8 · Cited by 2 · see citing works

Fine mapping and candidate gene mining of QSc/Sl.cib-7H for spike compactness and length and its pleiotropic effects on yield-related traits in barley (Hordeum vulgare L.)

Wang, J., Tang, Y., Jin, L., Zhang, J., Huang, F., Li, Q., Chen, B., Zhang, L., Li, T., Zhang, H., et al. (2024) · Theoretical and Applied Genetics · doi:10.1007/s00122-024-04779-7 · Cited by 2 · see citing works

A lineage-specific Exo70 is required for receptor kinase-mediated immunity in barleyPreprint

Holden, S., Bergum, M., Green, P., Bettgenhaeuser, J., Hernández‐Pinzón, I., Thind, A. K., Clare, S. J., Russell, J. M., Hubbard, A., Taylor, J., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.19.473371 · Cited by 2 · see citing works

Golden Promise-rapid, a fast-cycling barley genotype with high transformation efficiencyPreprint

Buchmann, G., Haraldsson, E. B., Schüller, R., Rütjes, T., Walla, A. A., von Korff, M., & Liu, S. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.31.685778 · Cited by 2 · see citing works

Regulation of Seed Dormancy Genes in Triticeae Species

Sato, K., Nakamura, S., & Fujita, M. (2024) · Methods in molecular biology · doi:10.1007/978-1-0716-3965-8_2 · Cited by 1 · see citing works

Sequencing of historical plastid genomes reveal exceptional genetic diversity in early domesticated rye plants

Komluski, J., Filatova, S., Schlütz, F., Claaßen, B., Rösch, M., Krause‐Kyora, B., Kirleis, W., & Stukenbrock, E. H. (2025) · iScience · doi:10.1016/j.isci.2025.112716 · Cited by 1 · see citing works

Transgenic barley over-expressing Aspergillus niger phytase phyA in field trials

Vlčko, T., PSOTA, V., Koprna, R., Harwood, W., & Ohnoutková, L. (2025) · GM crops & food · doi:10.1080/21645698.2025.2559488 · Cited by 1 · see citing works

Sea barley: evolutionary insights and potential for crop improvement

Xu, Z., Wang, Z., Zheng, Y., Gao, H., Shen, Q., & Zhang, G. (2025) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2025.10.010 · Cited by 1 · see citing works

Proteomics of flour from domesticated varieties and wild barley reveals differences in their hordein compositions

Olesen, E., Füreder, J., Afjehi‐Sadat, L., Oxholm, O. A., Kidmose, U., Hebelstrup, K. H., Ibl, V., Poulsen, N. A., & Larsen, L. B. (2025) · Food Bioscience · doi:10.1016/j.fbio.2025.107892 · Cited by 1 · see citing works

Golden Promise-rapid, a fast-cycling and transformable barley genotype

Buchmann, G., Haraldsson, E. B., Schüller, R., Rütjes, T., Walla, A. A., von Korff, M., & Liu, S. (2026) · Journal of Experimental Botany · doi:10.1093/jxb/erag197 · Cited by 1 · see citing works

Applications of Optical Mapping for Plant Genome Assembly and Structural Variation Detection

Yuan, Y. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2067-0_13 · Cited by 1 · see citing works

Registration of Golden Promise/Otis barley recombinant inbred line mapping population

Bregitzer, P., Ajayi, O. O., Gao, D., Klos, K. E., & Mahalingam, R. (2023) · Journal of Plant Registrations · doi:10.1002/plr2.20337 · Cited by 1 · see citing works

Identification of transcriptionally active transposons in Barley

Gao, D., & Fox-Fogle, E. (2023) · BMC Genomic Data · doi:10.1186/s12863-023-01170-1 · Cited by 1 · see citing works

Brachypodium Distachyon

Ouellette, L., & Charron, J. (2024) · Elsevier eBooks · doi:10.1016/b978-0-12-822563-9.00176-1 · Cited by 1 · see citing works

FMO and CYP monooxygenase families determine the metabolic flux of hydroxylated tryptamine derivatives in barley ( Hordum vulgare ) following pathogen infectionPreprint

Christensen, J. M., Toldam-Andersen, M. M., Jørgensen, H. J. L., Micic, N., Bjarnholt, N., Motawia, M. S., Vijayanathan, M., Pizaine, M., Günther, J., Kjærulff, L., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.25.656007 · Cited by 1 · see citing works

A Multigraph model of the 3D genomePreprint

Makai, D., Cseh, A., Sepsi, A., & Makai, S. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.11.468281

High resolution mapping of novel non-transgressive hybrid susceptibility in barley exploited by P. teres f. maculata maps to a single pentatricopeptide repeat-containing proteinPreprint

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.17.585425

Barley BODYGUARD controls cuticular specialisations regulated by SHINE transcription factorsPreprint

McAllister, T., Campoli, C., Liu, L., Chia, T., Fisher, S. R., Horsnell, R. A., Prescott, A. R., Shoesmith, J., Eskan, M., Iredale, A., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.28.666421

Additional file 1 of Genetic analysis of the barley variegation mutant, grandpa1.a

Yang, S., Overlander, M., & Fiedler, J. D. (2021) · Figshare · doi:10.6084/m9.figshare.14211698

Additional file 1 of High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · Figshare · doi:10.6084/m9.figshare.26143743

Additional file 4 of High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · Figshare · doi:10.6084/m9.figshare.26741177

Additional file 2 of Genetic analysis of the barley variegation mutant, grandpa1.a

Yang, S., Overlander, M., & Fiedler, J. D. (2021) · Figshare · doi:10.6084/m9.figshare.14211701

Additional file 1 of Identification of transcriptionally active transposons in Barley

Gao, D., & Fox-Fogle, E. (2023) · Figshare · doi:10.6084/m9.figshare.24500865

Additional file 3 of High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · Figshare · doi:10.6084/m9.figshare.26741174

Additional file 2 of High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata

Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Poudel, R. S., Zhang, J., & Brueggeman, R. S. (2024) · Figshare · doi:10.6084/m9.figshare.26143853

Additional file 1 of The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

Bziuk, N., Maccario, L., Straube, B., Wehner, G., Sørensen, S. J., Schikora, A., & Smalla, K. (2021) · Figshare · doi:10.6084/m9.figshare.16901056

Physiological and molecular characterization of the mitigation of nitrogen deficiency stress by the arbuscular mycorrhizal fungus Rhizophagus irregularis associated with Maize (Zea mays L.)

Decouard, B. (2023) · doi:10.70675/736b1d6fz82d8z405bzb340zbcaa21303873

Epistatic interaction of the genes Raw1 and Raw7 controls barb size and frequency in barley awn roughnessPreprint

Awais, M., Jost, M., Khan, M., Pidon, H., Jhingan, S., Himmelbach, A., Hoffie, R. E., Hensel, G., Kumlehn, J., Rutten, T. L. M., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.27.721039

Barley HvBODYGUARD1 controls cuticular specialisations regulated by SHINE transcription factors

McAllister, T., Campoli, C., Liu, L., Chia, T., Fisher, S. R., Horsnell, R. A., Prescott, A. R., Shoesmith, J., Eskan, M., Iredale, A., et al. (2026) · New Phytologist · doi:10.1111/nph.71287

The demonstration of a single origin for nodule evolution, with nodule engineering in a non-nodulating speciesPreprint

Kundu, A., Price, R. J., Sanchez, E. R., Reyna‐Llorens, I., Jhu, M.-Y., Gao, J., Moraes, T. A., Marangelli, F., Libourel, C., Keller, J., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.31.728964

Local adjustment of exodermis to nutrient deficiency in crop species

Gargoš, O., Bauriedlová, Z., Klvaňová, R., Homola, A., Vaňková, R., Raimanová, I., Mašková, P., Šustr, M., Soukup, A., & Tylová, E. (2026) · Frontiers in Plant Science · doi:10.3389/fpls.2026.1817677

Phenotypic responses of barley to Akanthomyces muscarius inoculation are maintained in the offspring generation

Stawrakakis, K., Wysoczański, W., Lembicz, M., & Olejniczak, P. (2026) · BMC Plant Biology · doi:10.1186/s12870-026-09569-5

Spatiotemporal dynamics of the barley rhizosphere prokaryotic community following repeated inoculation with Ensifer meliloti Rm2011 in a three-year field study

Bziuk, N., Cambeis, M., Pohl, K., Nesme, J., Sørensen, S. J., Schikora, A., Smalla, K., & Schierstaedt, J. (2026) · Plant and Soil · doi:10.1007/s11104-026-09083-5

Golden Promise reference assembly

Schreiber (2019) · Figshare · doi:10.6084/m9.figshare.9332045

Genome Assembly of the Canadian two-row Malting Barley cultivar AAC Synergy

Xu, W. W., Tucker, J. R., Bekele, W. A., You, F. M., Fu, Y., Khanal, R. R., Yao, Z., Singh, J., Boyle, B., Beattie, A. D., et al. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab031 · Cited by 14 · see citing works

Chromosome-scale assembly of wild barley accession “OUH602”

Sato, K., Mascher, M., Himmelbach, A., Haberer, G., Spannagl, M., & Stein, N. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab244 · Cited by 32 · see citing works

Chromosome-scale assembly of barley cv. ‘Haruna Nijo’ as a resource for barley genetics

Sakkour, A., Mascher, M., Himmelbach, A., Haberer, G., Lux, T. M., Spannagl, M., Stein, N., Kawamoto, S., & Sato, K. (2022) · DNA Research · doi:10.1093/dnares/dsac001 · Cited by 22 · see citing works

A physical, genetic and functional sequence assembly of the barley genome

The International Barley Genome Sequencing Consortium (2012) · Nature · doi:10.1038/nature11543 · Cited by 1,456 · see citing works