Cited by 0Artificial Intelligence in Healthcare and EducationInformation Retrieval and Search BehaviorTopic Modeling

SEMA-RAG: A Self-Evolving Multi-Agent Retrieval-Augmented Generation Framework for Medical Reasoning

Open access
Huang, Yongfeng, Chen, Ruiying, Cheng, James·2026·Findings of the Association for Computational Linguistics: ACL 2026

Abstract

Retrieval-Augmented Generation (RAG) is widely employed to mitigate risks such as hallucinations and knowledge obsolescence in medical question answering, yet its predominantly single-round, static retrieval paradigm misaligns with the multi-stage process of clinical reasoning.This compressed workflow induces two structural deficiencies: question-to-query translation often lacks clinically grounded semantic interpretation, and retrieval lacks iterative sufficiency feedback, making it difficult to form reliable evidence chains.We argue that both issues stem from a deeper cause-overloading a single reasoning chain with heterogeneous tasks of interpretation, exploration, and adjudication-and that the remedy is to reconstruct the workflow via task decoupling and dynamic multi-round exploration.To this end, we propose SEMA-RAG, a Self-Evolving Multi-Agent RAG framework for medical question answering, which assigns these roles to three specialist agents: the Interpreter Agent for clinical schema interpretation, the Explorer Agent for sufficiency-driven self-evolving retrieval, and the Arbiter Agent for evidence adjudication and answer selection.Across five benchmarks and five LLM backbones, SEMA-RAG improves the strongest baseline by +6.46 accuracy points on average, measured per backbone.

AI snapshot

Written from the paper’s full text.

TL;DR

SEMA-RAG is a self-evolving multi-agent RAG framework for medical question answering that decouples clinical reasoning into Interpreter, Explorer, and Arbiter agents. Across five medical QA benchmarks and five LLM backbones, it improves the strongest baseline by an average of +6.46 accuracy points per backbone.

Key findings

  • SEMA-RAG achieves the best average accuracy within every model block across five benchmarks and five LLMs, with an average improvement of +6.46 accuracy points over the strongest baseline.
  • Role-wise removal on MedQA-US / PubMedQA* with deepseek-v3.1: full SEMA-RAG scores 89.95 / 59.20; removing I-Agent gives 85.47 / 54.20, removing E-Agent gives 83.58 / 50.80, and removing A-Agent gives 86.49 / 53.60. Removing E-Agent causes the largest drop.
  • Query breadth with Tmax = 2 on MedQA-US: m = 1 gives 86.72, m = 2 gives 89.00, and m = 3 gives 89.95. Most benefit is captured within two rounds, with performance peaking around Tmax ∈ {2, 3}; the two-round setting already outperforms the reproduced i-MedRAG baseline using three fixed retrieval rounds.
  • Efficiency on MedQA-US with deepseek-v3.1: SEMA-RAG uses 4.8 LLM calls, 3.4 retrievals, 9.5 s, 89.95% accuracy, and 19,488.4 tokens/question, compared with i-MedRAG at 3.0 calls, 9.0 retrievals, 8.8 s, 74.78%, and 21,516.6 tokens/question.

Methods

  • SEMA-RAG assigns three roles to agents sharing the same underlying LLM but differentiated by prompts: I-Agent maps the question into a clinical schema tuple (clinical intent, medical entities, clinical constraints, initial query) and linearizes it; E-Agent performs sufficiency-driven self-evolving multi-round dense retrieval, predicts a sufficiency flag, gap description, and next queries, and stops when evidence is sufficient, Tmax is reached, or stagnation occurs; A-Agent adjudicates the converged evidence into a traceable report and selects the final answer.
  • Evaluation uses five MIRAGE benchmarks: MMLU-Med, MedQA-US, MedMCQA, PubMedQA*, and BioASQ-Y/N. Five LLM backbones are tested: deepseek-v3.1, kimi-k2, qwen3-coder-plus, gemini-2.0-flash, and glm-4.0-flash. Baselines are CoT, MedCPT, MedRAG, and i-MedRAG.
  • Retrieval uses MedCPT as the dense retriever with FAISS over Textbooks and StatPearls. All methods are zero-shot; default SEMA-RAG settings are Tmax = 2, k = 16, m = 3, temperature 1.0 for I/E-Agent and 0.0 for A-Agent. Analyses include role-wise removal, depth and breadth variation, cost/efficiency, retriever robustness, smaller-model robustness, and open-ended/interactive benchmarks.

Limitations

  • The paper states that evaluation remains limited to benchmark-based settings rather than realistic clinical workflows such as longitudinal EHR reasoning or record-grounded decision support.
  • The paper states that the framework depends on retrieval corpus quality and coverage; if critical evidence is missing, outdated, or only partially retrieved, the self-evolving loop may still converge to incomplete grounding.
  • The paper states that the sufficiency criterion is not explicitly designed for option-level separability or generative completeness, and that SEMA-RAG adds inference cost over single-round methods and lacks explicit relevance filtering during evidence accumulation, making performance sensitive to stopping criteria and exploration hyperparameters. The error analysis further shows a case where retrieval supports class-level elimination but not option-level discrimination, and A-Agent commits to an unsupported candidate.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.18653/v1/2026.findings-acl.917

Cites

39 of 62 references verified0 citation errors · 23 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

2 of 2 cited sources checked · 2 supported · 0 flagged

  • Findingreasoning

    These gains come with a moderate overhead relative to single-pass methods.

    “Second, these gains come with a moderate overhead relative to singlepass methods, as expected from multi-agent, multiround inference.”
    Quote in the paperSubstantial claim
  • Findingown data

    The full SEMA-RAG consistently performs best across both MedQA-US and PubMedQA*.

    “Table 2 shows that the full SEMA-RAG consistently performs best across both MedQA-US and PubMedQA*.”
    Quote in the paperSubstantial claim
  • Findingown data

    Ablating any single agent leads to a clear drop.

    “Ablating any single agent leads to a clear drop”
    Quote in the paperSubstantial claim
  • Findingreasoning

    The gains are larger on benchmarks where premature commitment under incomplete evidence is costly.

    “A consistent pattern is that the gains are larger on benchmarks where premature commitment under incomplete evidence is costly.”
    Quote in the paperSubstantial claim
  • Findingown data

    SEMA-RAG achieves a more favorable accuracy-efficiency trade-off compared with i-MedRAG.

    “Third, compared with the iterative baseline i-MedRAG, SEMA-RAG achieves a more favorable accuracy-efficiency trade-off”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim. 5
  • May combine two claims. 14
  • The quote only partly states this claim. 3
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Compared with single-turn QA, MAQuE places greater emphasis on maintaining robust, relevant, and contextually appropriate responses across iterative interactions.

    “Compared with single-turn QA, it places greater emphasis on maintaining robust, rele-vant, and contextually appropriate responses across iterative interactions.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Gong et al., 2025 source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    MAQuE is a multi-turn medical dialogue benchmark that evaluates response quality in simulated clinical communication settings.

    “MAQuE is a multi-turn medical dialogue benchmark that evaluates response quality in simulated clinical communication settings”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites Gong et al., 2025 source
  • May combine two claims.

    Findingreasoning

    SEMA-RAG makes the temporal constraint retrieval-actionable and carries it through to option selection, yielding the correct choice Staphylococcus aureus (Option D).

    “In contrast, SEMA-RAG makes the temporal constraint retrieval-actionable and carries it through to option selection.The I-Agent surfaces hospital day 7 as a key constraint, the E-Agent detects the missing distinction between community-and hospital-acquired spectra and performs targeted follow-up retrieval, and the A-Agent consolidates the resulting evidence and maps it to the candidate set, yield”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    I-Agent makes hospital day 7 retrieval-actionable, anchoring evidence in the late-onset inpatient context and enabling option-level discrimination for S. aureus.

    “As shown in Table 4 (Step 1), I-Agent makes hospital day 7 retrieval-actionable, anchoring evidence in the late-onset inpatient context and enabling option-level discrimination for S. aureus.”
    Quote in the paperSubstantial claim
  • The quote only partly states this claim.

    Findingown data

    SEMA-RAG achieves the best average accuracy within every model block across five medical QA benchmarks and five LLMs.

    “Overall, SEMA-RAG achieves the best average accuracy within every model block”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Most of the benefit is captured within two rounds, with performance peaking around T_max ∈ {2,3}; beyond that, deeper exploration saturates and can introduce noise.

    “Figure 3 suggests that most of the benefit is captured within two rounds, with performance peaking around T max ∈ {2, 3}; beyond that, deeper exploration saturates and can introduce noise.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingnone given

    This overhead is more efficient than fixed-step iterative baselines, but remains higher than single-round methods.

    “Although this overhead is more efficient than fixed-step iterative baselines, it remains higher than single-round methods.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Increasing m improves accuracy, but the gains quickly taper.

    “Table 3 shows a clear monotonic trend: increasing m improves accuracy, but the gains quickly taper.”
    Quote in the paperSubstantial claim
  • The quote only partly states this claim.

    Findingown data

    Removing the I-Agent consistently degrades performance on MedQA-US and PubMedQA*.

    “Table 2 shows that removing the I-Agent consistently degrades performance”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingreasoning

    The retrieved evidence supports ruling out the Gram-positive options, but it does not provide option-separating signals within the remaining Gram-negative candidates.

    “The retrieved evidence supports ruling out the Gram-positive options, but it does not provide option-separating signals within the remaining Gram-negative candidates.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    On MedQA-US with gemma3:4b, although absolute performance of all methods drops, SEMA-RAG still maintains a clear advantage over the strongest single-round baseline.

    “Table 9 shows that although the absolute performance of all methods drops on the smaller model, SEMA-RAG still maintains a clear advantage over the strongest single-round baseline.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingreasoning

    E-Agent retrieves evidence linking Lipid A to LPS and therefore to Gram-negative organisms, which is sufficient to eliminate the Gram-positive distractors in Q0060.

    “Guided by these anchors, E-Agent retrieves evidence linking Lipid A to LPS and therefore to Gram-negative organisms, which is sufficient to eliminate the Gram-positive distractors.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    In MedQA-US Q0060, SEMA-RAG retrieves the correct biochemical cue at the class level but still makes an incorrect discrete choice among the remaining candidates.

    “This case is informative because the system retrieves the correct biochemical cue at the class level, yet still makes an incorrect discrete choice among the remaining candidates.”
    Quote in the paperNot a substantial claim
  • The quote only partly states this claim.

    Findingown data

    SEMA-RAG consistently improves over the corresponding single-round retrieval baseline under both qwen3embedding-4b and MedCPT retrievers on MedQA-US.

    “8 shows that SEMA-RAG consistently improves over the corresponding single-round retrieval baseline under both retrievers.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Expanding the query set helps cover complementary evidence gaps in early exploration, while additional branches beyond a moderate breadth tend to introduce overlapping or low-yield retrievals.

    “This suggests that expanding the query set helps cover complementary evidence gaps in early exploration, while additional branches beyond a moderate breadth tend to introduce overlapping or low-yield retrievals.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    Task decoupling with sufficiency-driven self-evolving retrieval helps form a more reliable evidence chain and prevents premature decisions under insufficient evidence.

    “Overall, the case shows how task decoupling with sufficiency-driven self-evolving retrieval helps form a more reliable evidence chain and prevents premature decisions under insufficient evidence.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The E-Agent's sufficiency flag reliably indicates whether evidence is sufficient.
    • Rests on an assumption: The I-Agent's clinical schema extraction accurately captures clinical intent and constraints.
    • Rests on an assumption: The A-Agent's evidence adjudication reliably identifies relevant evidence and resolves conflicts.
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Study design and conductnone given

    The current design lacks explicit relevance filtering during evidence accumulation, making performance sensitive to stopping criteria and exploration hyperparameters.

    “The current design also lacks explicit relevance filtering during evidence accumulation, making performance sensitive to stopping criteria and exploration hyperparameters.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Study design and conductnone given

    The current sufficiency criterion is not explicitly designed for option-level separability or generative completeness.

    “In addition, the current sufficiency criterion is not explicitly designed for option-level separability or generative completeness.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    I-Agent keeps retrieval aligned with the intended clinical scenario and provides a cleaner substrate for subsequent exploration and adjudication.

    “By extracting a structured clinical schema and making such key conditions retrievable, I-Agent keeps retrieval aligned with the intended clinical scenario and provides a cleaner substrate for subsequent exploration and adjudication.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The I-Agent's clinical schema extraction accurately captures clinical intent and constraints.
  • May combine two claims.

    Interpretationreasoning

    Without E-Agent, the system loses explicit sufficiency feedback and is more prone to stop with partially covered evidence, leaving key constraints unresolved.

    “Without E-Agent, the system loses explicit sufficiency feedback and is more prone to stop with partially covered evidence, leaving key constraints unresolved.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The E-Agent's sufficiency flag reliably indicates whether evidence is sufficient.
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    The framework depends on the quality and coverage of the retrieval corpus.

    “Our framework also depends on the quality and coverage of the retrieval corpus.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The retrieval corpus contains the necessary evidence to answer the benchmark questions.
21 of 21
  • The paper relies on this without support.

    The E-Agent's sufficiency flag reliably indicates whether evidence is sufficient.

    “where s t ∈ {0, 1} indicates evidence sufficiency: if s t = 1, the evidence is sufficient and we set Q t+1 = ∅; otherwise (s t = 0), evidence gaps remain”
  • The paper relies on this without support.

    The I-Agent's clinical schema extraction accurately captures clinical intent and constraints.

    “I-Agent does not merely rephrase the input medical question Q; instead, it semantically structures Q and projects it onto an explicit Clinical Schema.This process externalizes latent clinical intent and key constraints, providing stable anchors for subsequent retrieval and reasoning.”
  • The paper relies on this without support.

    The A-Agent's evidence adjudication reliably identifies relevant evidence and resolves conflicts.

    “A-Agent first adjudicates C * by removing irrelevant or duplicated content, identifying consistencies and conflicts, and organizing supporting and refuting clues into a structured evidence report R.”
  • The paper relies on this without support.

    The retrieval corpus contains the necessary evidence to answer the benchmark questions.

    “Our framework also depends on the quality and coverage of the retrieval corpus.”
  • The paper relies on this without support.

    The five LLM backbones are representative of LLMs for medical QA, so the backbone-agnostic conclusion generalizes.

    “These models originate from different providers, encompass diverse pretraining configurations and capability focuses.”
  • The paper relies on this without support.

    The five benchmarks are representative of medical QA tasks, so the improvements generalize.

    “Together, they cover general medical knowledge, clinical examinations, and biomedical literature inference.”
  • The paper relies on this without support.

    The MedQA-US error Q0060 is representative of SEMA-RAG's failure modes.

    “we analyze a representative MedQA-US error (Question 0060) in Table 7.”
  • The paper relies on this without support.

    gemma3:4b has weaker instruction-following ability than the larger backbones.

    “This result suggests that task decoupling remains beneficial even when the base model has weaker instruction-following ability.”
8 of 8

Cites

Flagged first, then by citations

Research works printed but not linked: 1

  1. Shahram Yazdani, Mohammad Hosseinzadeh, and Fakhrolsadat Hosseini. 2017. Models of clinical rea- soning with a focus on general practice: A critical review. Journal of Advances in Medical Education & Professionalism, 5(4):177-184.

Authors
Huang, Y., Chen, R., & Cheng, J.
Affiliations
  • Chinese University of Hong Kong (HK)
  • Wuhan University of Technology (CN)
Venue
Findings of the Association for Computational Linguistics: ACL 2026
Published
2026
Pages
18423-18442
OpenAlex
W7166882537
Cited by
0
References
52
FWCI
0.00
Type
conference paper
Open access
Licence
cc-by
Topics
  • Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
  • Physical Sciences › Computer Science › Information Systems › Information Retrieval and Search Behavior
  • Physical Sciences › Computer Science › Artificial Intelligence › Topic Modeling
Keywords
retrieval-augmented generation, multi-agent systems, medical question answering, clinical reasoning, hallucination mitigation, task decoupling, large language models

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