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Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium
Open accessAbstract
The taxonomic history of anamorphic species attributed to Penicillium subgenus Biverticillium is reviewed, along with evidence supporting their relationship with teleomorphic species classified in Talaromyces. To supplement previous conclusions based on ITS, SSU and/or LSU sequencing that Talaromyces and subgenus Biverticillium comprise a monophyletic group that is distinct from Penicillium at the generic level, the phylogenetic relationships of these two groups with other genera of Trichocomaceae was further studied by sequencing a part of the RPB1 (RNA polymerase II largest subunit) gene. Talaromyces species and most species of Penicillium subgenus Biverticilliumsensu Pitt reside in a monophyletic clade distant from species of other subgenera of Penicillium. For detailed phylogenetic analysis of species relationships, the ITS region (incl. 5.8S nrDNA) was sequenced for the available type strains and/or representative isolates of Talaromyces and related biverticillate anamorphic species. Extrolite profiles were compiled for all type strains and many supplementary cultures. All evidence supports our conclusions that Penicillium subgenus Biverticillium is distinct from other subgenera in Penicillium and should be taxonomically unified with the Talaromyces species that reside in the same clade. Following the concepts of nomenclatural priority and single name nomenclature, we transfer all accepted species of Penicillium subgenus Biverticillium to Talaromyces. A holomorphic generic diagnosis for the expanded concept of Talaromyces, including teleomorph and anamorph characters, is provided. A list of accepted Talaromyces names and newly combined Penicillium names is given. Species of biotechnological and medical importance, such as P. funiculosum and P. marneffei, are now combined in Talaromyces. Excluded species and taxa that need further taxonomic study are discussed. An appendix lists other generic names, usually considered synonyms of Penicillium sensu lato that were considered prior to our adoption of the name Talaromyces. TAXONOMIC NOVELTIES: Taxonomic novelties:New species - Talaromyces apiculatus Samson, Yilmaz & Frisvad, sp. nov. New combinationsand names - Talaromyces aculeatus (Raper & Fennell) Samson, Yilmaz, Frisvad & Seifert, T. albobiverticillius (H.-M. Hsieh, Y.-M. Ju & S.-Y. Hsieh) Samson, Yilmaz, Frisvad & Seifert, T. allahabadensis (B.S. Mehrotra & D. Kumar) Samson, Yilmaz & Frisvad, T. aurantiacus (J.H. Mill., Giddens & A.A. Foster) Samson, Yilmaz, & Frisvad, T. boninensis (Yaguchi & Udagawa) Samson, Yilmaz, & Frisvad, T. brunneus (Udagawa) Samson, Yilmaz & Frisvad, T. calidicanius (J.L. Chen) Samson, Yilmaz & Frisvad, T. cecidicola (Seifert, Hoekstra & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. coalescens (Quintan.) Samson, Yilmaz & Frisvad, T. dendriticus (Pitt) Samson, Yilmaz, Frisvad & Seifert, T. diversus (Raper & Fennell) Samson, Yilmaz & Frisvad, T. duclauxii (Delacr.) Samson, Yilmaz, Frisvad & Seifert, T. echinosporus (Nehira) Samson, Yilmaz & Frisvad, comb. nov. T. erythromellis (A.D. Hocking) Samson, Yilmaz, Frisvad & Seifert, T. funiculosus (Thom) Samson, Yilmaz, Frisvad & Seifert, T. islandicus (Sopp) Samson, Yilmaz, Frisvad & Seifert, T. loliensis (Pitt) Samson, Yilmaz & Frisvad, T. marneffei (Segretain, Capponi & Sureau) Samson, Yilmaz, Frisvad & Seifert, T. minioluteus (Dierckx) Samson, Yilmaz, Frisvad & Seifert, T. palmae (Samson, Stolk & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. panamensis (Samson, Stolk & Frisvad) Samson, Yilmaz, Frisvad & Seifert, T. paucisporus (Yaguchi, Someya & Udagawa) Samson & Houbraken T. phialosporus (Udagawa) Samson, Yilmaz & Frisvad, T. piceus (Raper & Fennell) Samson, Yilmaz, Frisvad & Seifert, T. pinophilus (Hedgcock) Samson, Yilmaz, Frisvad & Seifert, T. pittii (Quintan.) Samson, Yilmaz, Frisvad & Seifert, T. primulinus (Pitt) Samson, Yilmaz & Frisvad, T. proteolyticus (Kamyschko) Samson, Yilmaz & Frisvad, T. pseudostromaticus (Hodges, G.M. Warner, Rogerson) Samson, Yilmaz, Frisvad & Seifert, T. purpurogenus (Stoll) Samson, Yilmaz, Frisvad & Seifert, T. rademirici (Quintan.) Samson, Yilmaz & Frisvad, T. radicus (A.D. Hocking & Whitelaw) Samson, Yilmaz, Frisvad & Seifert, T. ramulosus (Visagie & K. Jacobs) Samson, Yilmaz, Frisvad & Seifert, T. rubicundus (J.H. Mill., Giddens & A.A. Foster) Samson, Yilmaz, Frisvad & Seifert, T. rugulosus (Thom) Samson, Yilmaz, Frisvad & Seifert, T. sabulosus (Pitt & A.D. Hocking) Samson, Yilmaz & Frisvad, T. siamensis (Manoch & C. Ramírez) Samson, Yilmaz & Frisvad, T. sublevisporus (Yaguchi & Udagawa) Samson, Yilmaz & Frisvad, T. variabilis (Sopp) Samson, Yilmaz, Frisvad & Seifert, T. varians (G. Sm.) Samson, Yilmaz & Frisvad, T. verruculosus (Peyronel) Samson, Yilmaz, Frisvad & Seifert, T. viridulus Samson, Yilmaz & Frisvad.
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Cites
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr121 · Cited by 39,969
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Stamatakis, A., Hoover, P., & Rougemont, J. (2008) · Systematic Biology · doi:10.1080/10635150802429642 · Cited by 7,028
Raper, K. B., & Fennell, D. I. (1973) · Andalas University Repository (Andalas University) · Cited by 1,685
The genus Penicillium and its teleomorphic states Eupenicillium and Talaromyces
Pitt, J. I. (1979) · Medical Entomology and Zoology · Cited by 1,481
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
Nierman, W. C., Pain, A., Anderson, M. J., Wortman, J. R., Kim, H. S., Arroyo, J., Berriman, M., Abe, K., Archer, D. B., Bermejo, C., et al. (2005) · Nature · doi:10.1038/nature04332 · Cited by 1,391
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Galagan, J. E., Calvo, S. E., Cuomo, C., Ma, L.-J., Wortman, J. R., Batzoglou, S., Lee, S.-I., Baştürkmen, M., Spevak, C. C., Clutterbuck, J., et al. (2005) · Nature · doi:10.1038/nature04341 · Cited by 1,365
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
Pel, H. J., de Winde, J. H., Archer, D. B., Dyer, P. S., Hofmann, G., Schaap, P. J., Turner, G., de Vries, R. P., Albang, R., Albermann, K., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1282 · Cited by 1,173
Self-citationRaper, K. B., & Pramer, D. (1969) · Soil Science · doi:10.1097/00010694-196903000-00015 · Cited by 920
The genera of fungi sporulating in pure culture
von Arx, J. A. (1970) · Cited by 715
de Hoog, G. S., & van den Ende, A. H. G. G. (1998) · Mycoses · doi:10.1111/j.1439-0507.1998.tb00321.x · Cited by 574
Phylogeny of Penicillium and the segregation of Trichocomaceae into three families
Houbraken, J., & Samson, R. A. (2011) · Studies in Mycology · doi:10.3114/sim.2011.70.01 · Cited by 538
Self-citationClements, F. E. (1909) · doi:10.5962/bhl.title.54501 · Cited by 521
Frisvad, J. C., & Samson, R. A. (2004) · Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU) · Cited by 519
Self-citationPaecilomyces and Some Allied Hyphomycetes
(1975) · Transactions of the British Mycological Society · doi:10.1016/s0007-1536(75)80098-2 · Cited by 489
REVISIONES HYPHOMYCETUM ALIQUOT CUM APPENDICE DE NOMINIBUS REJICIENDIS
Hughes, S. J. (1958) · Canadian Journal of Botany · doi:10.1139/b58-067 · Cited by 479
Turner, W. B., & Aldridge, D. C. (1983) · Academic Press Inc. (London) Ltd. eBooks · Cited by 477
Nielsen, K. (2003) · Journal of Chromatography A · doi:10.1016/s0021-9673(03)00490-4 · Cited by 447
The Genera of Fungi Sporulating in Pure Culture
K., R. P., & von Arx, J. A. (1975) · Mycologia · doi:10.2307/3758351 · Cited by 447
Smedsgaard, J. (1997) · Journal of Chromatography A · doi:10.1016/s0021-9673(96)00803-5 · Cited by 434
Samson, R. A., Houbraken, J. A. M. P., Thrane, U., Frisvad, J. C., & Andersen, B. (2010) · VBN Forskningsportal (Aalborg Universitet) · Cited by 431
Self-citationThe Amsterdam Declaration on Fungal Nomenclature
Hawksworth, D. L., Crous, P. W., Redhead, S. A., Reynolds, D. R., Samson, R. A., Seifert, K. A., Taylor, J. W., Wingfield, M. J., Abaci, Ö., Aime, C., et al. (2011) · IMA Fungus · doi:10.5598/imafungus.2011.02.01.14 · Cited by 410
Self-citationFrisvad, J. C., & Thrane, U. (1987) · Journal of Chromatography A · doi:10.1016/s0021-9673(01)86850-3 · Cited by 387
Self-citationAdvances in Penicillium and Aspergillus Systematics
(1986) · Springer eBooks · doi:10.1007/978-1-4757-1856-0 · Cited by 375
Seifert, K. A., Gareth, M.-J., Gams, W., & Kendrick, B. (2011) · Cited by 355
Self-citationManual and atlas of the Penicillia
Ramirez, C. (1982) · Medical Entomology and Zoology · Cited by 349
Modern Concepts in Penicillium and Aspergillus Classification
(1990) · Springer eBooks · doi:10.1007/978-1-4899-3579-3 · Cited by 323
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
Sharpton, T. J., Stajich, J. E., Rounsley, S. D., Gardner, M. J., Wortman, J. R., Jordar, V. S., Maiti, R., Kodira, C. D., Neafsey, D. E., Zeng, Q., et al. (2009) · Genome Research · doi:10.1101/gr.087551.108 · Cited by 317
Novel Neosartorya species isolated from soil in Korea
Hong, S.-B., Cho, H.-S., Shin, H.-D., Frisvad, J. C., & Samson, R. A. (2006) · International Journal of Systematic and Evolutionary Microbiology · doi:10.1099/ijs.0.63980-0 · Cited by 302
Self-citationFleming’s penicillin producing strain is not Penicillium chrysogenum but P. rubens
Houbraken, J., Frisvad, J. C., & Samson, R. A. (2011) · IMA Fungus · doi:10.5598/imafungus.2011.02.01.12 · Cited by 262
Self-citationDereplication of Microbial Natural Products by LC-DAD-TOFMS
Nielsen, K. F., Månsson, M., Rank, C., Frisvad, J. C., & Larsen, T. O. (2011) · Journal of Natural Products · doi:10.1021/np200254t · Cited by 254
Self-citationAscocarps of Aspergillus and Penicillium
Benjamin, C. R. (1955) · Mycologia · doi:10.1080/00275514.1955.12024485 · Cited by 202
Houbraken, J., Spierenburg, H., & Frisvad, J. C. (2012) · Antonie van Leeuwenhoek · doi:10.1007/s10482-011-9647-1 · Cited by 192
Self-citationMasclaux, F., Guého, E., de Hoog, G. S., & Christen, R. (1995) · Medical Mycology · doi:10.1080/02681219580000651 · Cited by 186
Berbee, M. L., Yoshimura, A., Sugiyama, J., & Taylor, J. W. (1995) · Mycologia · doi:10.1080/00275514.1995.12026523 · Cited by 169
LoBuglio, K. F., Pitt, J. I., & Taylor, J. W. (1993) · Mycologia · doi:10.1080/00275514.1993.12026313 · Cited by 157
Frisvad, J. C. (1989) · Archives of Environmental Contamination and Toxicology · doi:10.1007/bf01062373 · Cited by 143
Self-citationThe Genus Penicillium and Its Teleomorphic States Eupenicillium and Talaromyces
Samson, R. A., & Pitt, J. I. (1981) · Mycologia · doi:10.2307/3759616 · Cited by 143
Self-citationTaxonomy of Penicillium citrinum and related species
Houbraken, J. A. M. P., Frisvad, J. C., & Samson, R. A. (2010) · Fungal Diversity · doi:10.1007/s13225-010-0047-z · Cited by 138
Self-citationHoubraken, J. A. M. P., Varga, J., Rico-Munoz, E., Johnson, S., & Samson, R. A. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.01761-07 · Cited by 117
Self-citationChemotaxonomy of the genus Talaromyces
Frisvad, J. C., Filtenborg, O., Samson, R. A., et al. (1990) · Antonie van Leeuwenhoek · doi:10.1007/bf00403953 · Cited by 89
Self-citationLoBuglio, K. F., Pitt, J. I., & Taylor, J. W. (1993) · Mycologia · doi:10.2307/3760506 · Cited by 89
Ogawa, H., Yoshimura, A., & Sugiyama, J. (1997) · Mycologia · doi:10.1080/00275514.1997.12026842 · Cited by 75
The Genus Talaromyces: Studies on Talaromyces and Related Genera II
Fennell, D. I., Stolk, A. C., & Samson, R. A. (1973) · Mycologia · doi:10.2307/3758303 · Cited by 72
Self-citationKolařík, M., Kubátová, A., Pažoutová, S., & Šrůtka, P. (2004) · Mycological Research · doi:10.1017/s0953756204000796 · Cited by 69
Quinolactacins A1 and A2, New Acetylcholinesterase Inhibitors from Penicillium citrinum.
KIM, W.-G., Song, N., & Yoo, I. (2001) · The Journal of Antibiotics · doi:10.7164/antibiotics.54.831 · Cited by 66
Phylogenetic analyses of penicillia based on partial calmodulin gene sequences
Wang, L., & Zhuang, W.-Y. (2006) · Biosystems · doi:10.1016/j.biosystems.2006.04.008 · Cited by 43
Sex in Penicillium: Combined phylogenetic and experimental approaches
López‐Villavicencio, M., Aguileta, G., Giraud, T., de Vienne, D. M., Lacoste, S., Couloux, A., & Dupont, J. (2010) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2010.05.002 · Cited by 42
Species names in current use in the Trichocomaceae (Fungi, Eurotiales)
Pitt, J. I. (1993) · Medical Entomology and Zoology · Cited by 38
Williams, R. M. (2011) · The Journal of Organic Chemistry · doi:10.1021/jo2003693 · Cited by 30
Metadata
- Authors
- Samson, R. A., Yilmaz, N., Houbraken, J., Spierenburg, H., Seifert, K. A., Peterson, S. W., Varga, J., & Frisvad, J. C.
- Venue
- Studies in Mycology
- Published
- 2011-09
- Volume
- 70
- Issue
- 1
- Pages
- 159-183
- ISSN
- 0166-0616 (ISSN-L)
- OpenAlex
- W2168426583
- Cited by
- 435
- References
- 49
- FWCI
- 8.58
- Type
- journal article
- Language
- en
- Open access
- hybrid
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