Cited by 15Advanced Neuroimaging Techniques and ApplicationsHIV Research and TreatmentHIV-related health complications and treatments

Fixel-based analysis and free water corrected DTI evaluation of hiv associated neurocognitive disorders.

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Finkelstein, Alan, Faiyaz, Abrar, Weber, Miriam T., Qiu, Xing, Uddin, Md Nasir, Zhong, Jianhui, Schifitto, Giovanni·2021·Frontiers in Neurology

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Abstract

Background: White matter (WM) damage is a consistent finding in HIV-infected (HIV+) individuals. Previous studies have evaluated WM fiber tract-specific brain regions in HIV-associated neurocognitive disorders (HAND) using diffusion tensor imaging (DTI). However, DTI might lack an accurate biological interpretation, and the technique suffers from several limitations. Fixel-based analysis (FBA) and free water corrected DTI (fwcDTI) have recently emerged as useful techniques to quantify abnormalities in WM. Here, we sought to evaluate FBA and fwcDTI metrics between HIV+ and healthy controls (HIV−) individuals. Using machine learning classifiers, we compared the specificity of both FBA and fwcDTI metrics in their ability to distinguish between individuals with and without cognitive impairment in HIV+ individuals. Methods: Forty-two HIV+ and 52 HIV– participants underwent MRI exam, clinical, and neuropsychological assessments. FBA metrics included fiber density (FD), fiber bundle cross section (FC), and fiber density and cross section (FDC). We also obtained fwcDTI metrics such as fractional anisotropy (FA T ) and mean diffusivity (MD T ). Tract-based spatial statistics (TBSS) was performed on FA T and MD T . We evaluated the correlations between MRI metrics with cognitive performance and blood markers, such as neurofilament light chain (NfL), and Tau protein. Four different binary classifiers were used to show the specificity of the MRI metrics for classifying cognitive impairment in HIV+ individuals. Results: Whole-brain FBA showed significant reductions (up to 15%) in various fiber bundles, specifically the cerebral peduncle, posterior limb of internal capsule, middle cerebellar peduncle, and superior corona radiata. TBSS of fwcDTI metrics revealed decreased FA T in HIV+ individuals compared to HIV– individuals in areas consistent with those observed in FBA, but these were not significant. Machine learning classifiers were consistently better able to distinguish between cognitively normal patients and those with cognitive impairment when using fixel-based metrics as input features as compared to fwcDTI metrics. Conclusion: Our findings lend support that FBA may serve as a potential in vivo biomarker for evaluating and monitoring axonal degeneration in HIV+ patients at risk for neurocognitive impairment.

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  1. [1]Collaboration H-C Ray M Logan R Sterne JA Hernandez-Diaz S Robins JM. The effect of combined antiretroviral therapy on the overall mortality of HIV-infected individuals. AIDS. (2010) 24: 123– 37. 10.1097/QAD.0b013e3283324283 19770621 PMC2920287 · DOI
  2. [2]Clifford DB Ances BM. HIV-associated neurocognitive disorder. Lancet Infect Dis. (2013) 13: 976– 86. 10.1016/S1473-3099(13)70269-X 24156898 PMC4108270 · DOI
  3. [3]Atluri VS Hidalgo M Samikkannu T Kurapati KR Jayant RD Sagar V. Effect of human immunodeficiency virus on blood-brain barrier integrity and function: an update. Front Cell Neurosci. (2015) 9: 212. 10.3389/fncel.2015.00212 26113810 PMC4461820 · DOI
  4. [4]Bissel SJ Wiley CA. Human immunodeficiency virus infection of the brain: pitfalls in evaluating infected/affected cell populations. Brain Pathol. (2004) 14: 97– 108. 10.1111/j.1750-3639.2004.tb00503.x 14997942 PMC1449744 · DOI
  5. [5]Yadav A Collman RG. CNS inflammation and macrophage/microglial biology associated with HIV-1 infection. J Neuroimmune Pharmacol. (2009) 4: 430– 47. 10.1007/s11481-009-9174-2 19768553 PMC5935112 · DOI
  6. [6]Liu H Xu E Liu J Xiong H. Oligodendrocyte injury and pathogenesis of HIV-1-associated neurocognitive disorders. Brain Sci. (2016) 6: 23. 10.3390/brainsci6030023 27455335 PMC5039452 · DOI
  7. [7]Alakkas A Ellis RJ Watson CW Umlauf A Heaton RK Letendre S. White matter damage, neuroinflammation, and neuronal integrity in HAND. J Neurovirol. (2019) 25: 32– 41. 10.1007/s13365-018-0682-9 30291567 PMC6416232 · DOI
  8. [8]Ances BM Hammoud DA. Neuroimaging of HIV-associated neurocognitive disorders (HAND). Curr Opin HIV AIDS. (2014) 9: 545– 51. 10.1097/COH.0000000000000112 25250553 PMC4217490 · DOI
  9. [9]Zhuang Y Qiu X Wang L Ma Q Mapstone M Luque A. Combination antiretroviral therapy improves cognitive performance and functional connectivity in treatment-naive HIV-infected individuals. J Neurovirol. (2017) 23: 704– 12. 10.1007/s13365-017-0553-9 28791662 PMC5655604 · DOI
  10. [10]Zhuang Y Zhang Z Tivarus M Qiu X Zhong J Schifitto G. Whole-brain computational modeling reveals disruption of microscale brain dynamics in HIV infected individuals. Hum Brain Mapp. (2021) 42: 95– 109. 10.1002/hbm.25207 32941693 PMC7721235 · DOI
  11. [11]Stamatovic SM Dimitrijevic OB Keep RF Andjelkovic AV. Inflammation and brain edema: new insights into the role of chemokines and their receptors. Acta Neurochir Suppl. (2006) 96: 444– 50. 10.1007/3-211-30714-1_91 16671502 · DOI
  12. [12]Pasternak O Sochen N Gur Y Intrator N Assaf Y. Free water elimination and mapping from diffusion MRI. Magn Reson Med. (2009) 62: 717– 30. 10.1002/mrm.22055 19623619 · DOI · Paper page
  13. [13]Basser PJ Mattiello J LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys J. (1994) 66: 259– 67. 10.1016/S0006-3495(94)80775-1 8130344 PMC1275686 · DOI · Paper page
  14. [14]Le Bihan D Mangin JF Poupon C Clark CA Pappata S Molko N. Diffusion tensor imaging: concepts and applications. J Magn Reson Imaging. (2001) 13: 534– 46. 10.1002/jmri.1076 11276097 · DOI · Paper page
  15. [15]Alexander AL Lee JE Lazar M Field AS. Diffusion tensor imaging of the brain. Neurotherapeutics. (2007) 4: 316– 29. 10.1016/j.nurt.2007.05.011 17599699 PMC2041910 · DOI · Paper page
  16. [17]Nir TM Jahanshad N Busovaca E Wendelken L Nicolas K Thompson PM. Mapping white matter integrity in elderly people with HIV. Hum Brain Mapp. (2014) 35: 975– 92. 10.1002/hbm.22228 23362139 PMC3775847 · DOI
  17. [18]Filippi CG Ulug AM Ryan E Ferrando SJ van Gorp W. Diffusion tensor imaging of patients with HIV and normal-appearing white matter on MR images of the brain. Am J Neuroradiol. (2001) 22: 277– 83. 11156769 PMC7973937
  18. [19]Chang L Wong V Nakama H Watters M Ramones D Miller EN. Greater than age-related changes in brain diffusion of HIV patients after 1 year. J Neuroimmune Pharmacol. (2008) 3: 265– 74. 10.1007/s11481-008-9120-8 18709469 PMC2693362 · DOI
  19. [20]Gongvatana A Schweinsburg BC Taylor MJ Theilmann RJ Letendre SL Alhassoon OM. White matter tract injury and cognitive impairment in human immunodeficiency virusinfected individuals. J Neurovirol. (2009) 15: 187– 95. 10.1080/13550280902769756 19306228 PMC3066173 · DOI
  20. [22]Hoare J Fouche J-P Phillips N Joska JA Donald KA Thomas K. Clinical associations of white matter damage in cART-treated HIV-positive children in South Africa. J Neurovirol. (2015) 21: 120– 8. 10.1007/s13365-014-0311-1 25604496 · DOI
  21. [23]Oh SW Shin NY Choi JY Lee SK Bang MR. Altered white matter integrity in human immunodeficiency virus-associated neurocognitive disorder: a tract-based spatial statistics study. Korean J Radiol. (2018) 19: 431– 42. 10.3348/kjr.2018.19.3.431 29713221 PMC5904470 · DOI
  22. [24]Smith SM Jenkinson M Johansen-Berg H Rueckert D Nichols TE Mackay CE. Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data. Neuroimage. (2006) 31: 1487– 505. 10.1016/j.neuroimage.2006.02.024 16624579 · DOI
  23. [25]Zhu T Zhong J Hu R Tivarus M Ekholm S Harezlak J. Patterns of white matter injury in HIV infection after partial immune reconstitution: a DTI tract-based spatial statistics study. J Neurovirol. (2013) 19: 10– 23. 10.1007/s13365-012-0135-9 23179680 PMC3568248 · DOI
  24. [26]Archer DB Patten C Coombes SA. Free-water and free-water corrected fractional anisotropy in primary and premotor corticospinal tracts in chronic stroke. Hum Brain Mapp. (2017) 38: 4546– 62. 10.1002/hbm.23681 28590584 PMC6866851 · DOI
  25. [27]Pasternak O Westin CF Dahlben B Bouix S Kubicki M. The extent of diffusion MRI markers of neuroinflammation and white matter deterioration in chronic schizophrenia. Schizophr Res. (2015) 161: 113– 8. 10.1016/j.schres.2014.07.031 25126717 PMC4277709 · DOI
  26. [28]Uddin MN Faiyaz A Wang L Zhuang Y Murray KD Descoteaux M. A longitudinal analysis of brain extracellular free water in HIV infected individuals. Sci Rep. (2021) 11: 8273. 10.1038/s41598-021-87801-y 33859326 PMC8050285 · DOI
  27. [29]Bergamino M Kuplicki R Victor TA Cha YH Paulus MP. Comparison of two different analysis approaches for DTI free-water corrected and uncorrected maps in the study of white matter microstructural integrity in individuals with depression. Hum Brain Mapp. (2017) 38: 4690– 702. 10.1002/hbm.23694 28631276 PMC6866929 · DOI
  28. [30]Bergamino M Pasternak O Farmer M Shenton ME Hamilton JP. Applying a free-water correction to diffusion imaging data uncovers stress-related neural pathology in depression. Neuroimage Clin. (2016) 10: 336– 42. 10.1016/j.nicl.2015.11.020 27006903 PMC4788504 · DOI
  29. [31]Mandl RC Pasternak O Cahn W Kubicki M Kahn RS Shenton ME. Comparing free water imaging and magnetization transfer measurements in schizophrenia. Schizophr Res. (2015) 161: 126– 32. 10.1016/j.schres.2014.09.046 25454797 PMC4277708 · DOI
  30. [32]Duering M Finsterwalder S Baykara E Tuladhar AM Gesierich B Konieczny MJ. Free water determines diffusion alterations and clinical status in cerebral small vessel disease. Alzheimers Dement. (2018) 14: 764– 74. 10.1016/j.jalz.2017.12.007 29406155 PMC5994358 · DOI
  31. [33]Albi A Pasternak O Minati L Marizzoni M Bartrés-Faz D Bargalló N. Free water elimination improves test–retest reproducibility of diffusion tensor imaging indices in the brain: a longitudinal multisite study of healthy elderly subjects. Hum Brain Mapp. (2017) 38: 12– 26. 10.1002/hbm.23350 27519630 PMC5493991 · DOI
  32. [35]Bach M Laun FB Leemans A Tax CM Biessels GJ Stieltjes B. Methodological considerations on tract-based spatial statistics (TBSS). Neuroimage. (2014) 100: 358– 69. 10.1016/j.neuroimage.2014.06.021 24945661 · DOI · Paper page
  33. [37]Rau Y-A Wang S-M Tournier J-D Lin S-H Lu C-S Weng Y-H. A longitudinal fixel-based analysis of white matter alterations in patients with Parkinson's disease. Neuroimage Clin. (2019) 24: 102098. 10.1016/j.nicl.2019.102098 31795054 PMC6889638 · DOI
  34. [38]Li Y Guo T Guan X Gao T Sheng W Zhou C. Fixel-based analysis reveals fiber-specific alterations during the progression of Parkinson's disease. Neuroimage Clin. (2020) 27: 102355. 10.1016/j.nicl.2020.102355 32736325 PMC7394754 · DOI
  35. [39]Storelli L Pagani E Preziosa P Filippi M Rocca MA. Measurement of white matter fiber-bundle cross-section in multiple sclerosis using diffusion-weighted imaging. Multiple Scler J. (2021) 27: 818– 26. 10.1177/1352458520938999 32662738 · DOI
  36. [40]Carandini T Mancini M Bogdan I Rae CL Barritt AW Sethi A. Disruption of brainstem monoaminergic fibre tracts in multiple sclerosis as a putative mechanism for cognitive fatigue: a fixel-based analysis. Neuroimage Clin. (2021) 30: 102587. 10.1016/j.nicl.2021.102587 33610097 PMC7903010 · DOI
  37. [41]Wallace EJ Mathias JL Ward L Fripp J Rose S Pannek K. A fixel-based analysis of micro-and macro-structural changes to white matter following adult traumatic brain injury. Hum Brain Mapp. (2020) 41: 2187– 97. 10.1002/hbm.24939 31999046 PMC7268050 · DOI
  38. [42]Verhelst H Giraldo D Vander Linden C Vingerhoets G Jeurissen B Caeyenberghs K. Cognitive training in young patients with traumatic brain injury: a fixel-based analysis. Neurorehabil Neural Repair. (2019) 33: 813– 24. 10.1177/1545968319868720 31416407 · DOI
  39. [43]Choy SW Bagarinao E Watanabe H Ho ETW Maesawa S Mori D. Changes in white matter fiber density and morphology across the adult lifespan: a cross-sectional fixel-based analysis. Hum Brain Mapp. (2020) 41: 3198– 211. 10.1002/hbm.25008 32304267 PMC7375080 · DOI
  40. [44]Genc S Tax CMW Raven EP Chamberland M Parker GD Jones DK. Impact of b-value on estimates of apparent fibre density. Hum Brain Mapp. (2020) 41: 2583– 95. 10.1002/hbm.24964 32216121 PMC7294071 · DOI
  41. [45]Tournier JD Calamante F Connelly A. Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. Neuroimage. (2007) 35: 1459– 72. 10.1016/j.neuroimage.2007.02.016 17379540 · DOI
  42. [46]Tournier JD Yeh CH Calamante F Cho KH Connelly A Lin CP. Resolving crossing fibres using constrained spherical deconvolution: validation using diffusion-weighted imaging phantom data. Neuroimage. (2008) 42: 617– 25. 10.1016/j.neuroimage.2008.05.002 18583153 · DOI
  43. [47]Jeurissen B Tournier JD Dhollander T Connelly A Sijbers J. Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. Neuroimage. (2014) 103: 411– 26. 10.1016/j.neuroimage.2014.07.061 25109526 · DOI
  44. [48]Newman BT Dhollander T Reynier KA Panzer MB Druzgal TJ. Test-retest reliability and long-term stability of three-tissue constrained spherical deconvolution methods for analyzing diffusion MRI data. Magn Reson Med. (2020) 84: 2161– 73. 10.1002/mrm.28242 32112479 PMC7329572 · DOI
  45. [49]Gandhi NS Moxley RT Creighton J Roosa HV Skolasky RL Selnes OA. Comparison of scales to evaluate the progression of HIV-associated neurocognitive disorder. HIV Ther. (2010) 4: 371– 9. 10.2217/hiv.10.23 20824119 PMC2933171 · DOI
  46. [50]Andersson JL Skare S Ashburner J. How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. Neuroimage. (2003) 20: 870– 88. 10.1016/S1053-8119(03)00336-7 14568458 · DOI · Paper page
  47. [51]Andersson JLR Sotiropoulos SN. An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. Neuroimage. (2016) 125: 1063– 78. 10.1016/j.neuroimage.2015.10.019 26481672 PMC4692656 · DOI
  48. [55]Raffelt D Tournier JD Fripp J Crozier S Connelly A Salvado O. Symmetric diffeomorphic registration of fibre orientation distributions. Neuroimage. (2011) 56: 1171– 80. 10.1016/j.neuroimage.2011.02.014 21316463 · DOI
  49. [57]Behrens TE Woolrich MW Jenkinson M Johansen-Berg H Nunes RG Clare S. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn Reson Med. (2003) 50: 1077– 88. 10.1002/mrm.10609 14587019 · DOI · Paper page
  50. [58]Dumont M Roy M Jodoin P-M Morency FC Houde J-C Xie Z. Free water in white matter differentiates MCI and AD from control subjects. Front Aging Neurosci. (2019) 11: 270. 10.3389/fnagi.2019.00270 31632265 PMC6783505 · DOI
  51. [59]Di Tommaso P Chatzou M Floden EW Barja PP Palumbo E Notredame C. Nextflow enables reproducible computational workflows. Nat Biotechnol. (2017) 35: 316. 10.1038/nbt.3820 28398311 · DOI · Paper page
  52. [60]Kurtzer GM Sochat V Bauer MW. Singularity: scientific containers for mobility of compute. PLoS ONE. (2017) 12: e0177459. 10.1371/journal.pone.0177459 28494014 PMC5426675 · DOI · Paper page
  53. [61]Benjamini Y Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. (1995) 57: 289– 300. 10.1111/j.2517-6161.1995.tb02031.x · DOI · Paper page
  54. [62]Raffelt DA Smith RE Ridgway GR Tournier JD Vaughan DN Rose S. Connectivity-based fixel enhancement: whole-brain statistical analysis of diffusion MRI measures in the presence of crossing fibres. Neuroimage. (2015) 117: 40– 55. 10.1016/j.neuroimage.2015.05.039 26004503 PMC4528070 · DOI
  55. [64]Abraham A Pedregosa F Eickenberg M Gervais P Mueller A Kossaifi J. Machine learning for neuroimaging with scikit-learn. Front Neuroinform. (2014) 8: 14. 10.3389/fninf.2014.00014 24600388 PMC3930868 · DOI
  56. [65]Hong S Banks WA. Role of the immune system in HIV-associated neuroinflammation and neurocognitive implications. Brain Behav Immun. (2015) 45: 1– 12. 10.1016/j.bbi.2014.10.008 25449672 PMC4342286 · DOI
  57. [66]Stave EA De Bellis MD Hooper SR Woolley DP Chang SK Chen SD. Dimensions of attention associated with the microstructure of corona radiata white matter. J Child Neurol. (2017) 32: 458– 66. 10.1177/0883073816685652 28090797 PMC5821265 · DOI
  58. [67]Luo L Xu L Jung R Pearlson G Adali T Calhoun VD. Constrained source-based morphometry identifies structural networks associated with default mode network. Brain Connect. (2012) 2: 33– 43. 10.1089/brain.2011.0026 22468608 PMC3621809 · DOI
  59. [68]Mandelkow EM Mandelkow E. Biochemistry and cell biology of tau protein in neurofibrillary degeneration. Cold Spring Harb Perspect Med. (2012) 2: a006247. 10.1101/cshperspect.a006247 22762014 PMC3385935 · DOI
  60. [69]Brown LA Scarola J Smith AJ Sanberg PR Tan J Giunta B. The role of tau protein in HIV-associated neurocognitive disorders. Mol Neurodegener. (2014) 9: 40. 10.1186/1750-1326-9-40 25304757 PMC4210623 · DOI
  61. [70]Vabalas A Gowen E Poliakoff E Casson AJ. Machine learning algorithm validation with a limited sample size. PLoS ONE. (2019) 14: e0224365. 10.1371/journal.pone.0224365 31697686 PMC6837442 · DOI · Paper page
  62. [71]Shaikhina T Khovanova NA. Handling limited datasets with neural networks in medical applications: a small-data approach. Artif Intell Med. (2017) 75: 51– 63. 10.1016/j.artmed.2016.12.003 28363456 · DOI

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Authors
Finkelstein, A., Faiyaz, A., Weber, M. T., Qiu, X., Uddin, M. N., Zhong, J., & Schifitto, G.
Affiliations
  • University of Rochester (US)
  • University of Rochester Medicine (US)
Corresponding author
  • Uddin, Md Nasir
  • Schifitto, Giovanni
Venue
Frontiers in Neurology
Published
2021-11-04
Volume
12
Pages
725059-725059
ISSN
1664-2295 (ISSN-L)
OpenAlex
W3211100651
Cited by
15
References
7
Citations by year
2026: 2 · 2025: 6 · 2024: 1 · 2023: 2 · 2022: 4
FWCI
0.92
Type
journal article
Language
en
Open access
Locations
  • Frontiers in Neurology (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
National Institutes of Health (R01-AG054328, R01-MH099921, R01-MH118020)
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
  • Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
  • Health Sciences › Medicine › Emergency Medicine › HIV-related health complications and treatments
Keywords
HIV-associated neurocognitive disorders, fixel-based analysis, white matter injury, axonal degeneration, cognitive impairment, fractional anisotropy, mean diffusivity, fiber density, neurofilament light chain, tau protein, cerebral peduncle, internal capsule, superior corona radiata, machine learning classification, MRI biomarkers

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