DPARSF: a MATLAB toolbox for “pipeline” data analysis of resting-state fMRI

Cited by (1,018)

Items 201–300 of 1,018

1. Altered resting state networks in epileptic patients with generalized tonic–clonic seizures
   Zhengge Wang, Guangming Lu, Zhiqiang Zhang, Yuan Zhong, Qing Jiao, Zongjun Zhang, Qifu Tan, Lei Tian, Guang‐Hui Chen, Wei Liao et al. · 2010 · Brain Research
2. Functional Connectivity-Based Prediction of Autism on Site Harmonized ABIDE Dataset
   Madhura Ingalhalikar, Sumeet Shinde, Arnav Karmarkar, Archith Rajan, D. Rangaprakash, Gopikrishna Deshpande · 2021 · IEEE Transactions on Biomedical Engineering
3. Connectivity-based parcellation of the human frontal pole with diffusion tensor imaging
   Liu, Huaigui, Qin, Wen, Li, Wei, Fan, Lingzhong, Wang, Jiaojian, Jiang, Tianzi, Yu, Chunshui · 2013 · The Journal of Neuroscience
4. Classifying the wandering mind: Revealing the affective content of thoughts during task-free rest periods
   Anita Tusche, Jonathan Smallwood, Boris C. Bernhardt, Tania Singer · 2014 · NeuroImage
5. Identification of the Early Stage of Alzheimer's Disease Using Structural MRI and Resting-State fMRI
   Seyed Hani Hojjati, Ata Ebrahimzadeh, Abbas Babajani-feremi A · 2019 · Frontiers in Neurology
6. Increased segregation of brain networks in focal epilepsy: An fMRI graph theory finding
   Mangor Pedersen, Amir Omidvarnia, Jennifer M. Walz, Graeme D. Jackson · 2015 · NeuroImage Clinical
7. Spontaneous Brain Activity Relates to Autonomic Arousal
   Fan, Jin, Xu, Pengfei, Van Dam, Nicholas T., Eilam-Stock, Tehila, Gu, Xiaosi, Luo, Yue-jia, Hof, Patrick R. · 2012 · The Journal of Neuroscience
8. Changes in functional connectivity of pain modulatory systems in women with primary dysmenorrhea
   Shyh‐Yuh Wei, Hsiang‐Tai Chao, Cheng‐Hao Tu, Wei‐Chi Li, Intan Low, Chih-Ying Chuang, Li‐Fen Chen, Jen‐Chuen Hsieh · 2015 · Pain
9. Using graph convolutional network to characterize individuals with major depressive disorder across multiple imaging sites
   Kun Qin, Du Lei, Walter Hugo Lopez Pinaya, Nanfang Pan, Wenbin Li, Ziyu Zhu, John A. Sweeney, Andrea Mechelli, Qiyong Gong · 2022 · EBioMedicine
10. Sino Longitudinal Study on Cognitive Decline (SILCODE): protocol for a Chinese longitudinal observational study to develop risk prediction models of conversion to mild cognitive impairment in individuals with subjective cognitive decline
    Xuanyu Li, Xiaoni Wang, Li Su, Xiaochen Hu, Ying Han · 2019 · BMJ Open
11. Interhemispheric Functional and Structural Disconnection in Alzheimer’s Disease: A Combined Resting-State fMRI and DTI Study
    Zhi­qun Wang, Jianli Wang, Han Zhang, Robert Mchugh, Xiaoyu Sun, Kuncheng Li, Qing X. Yang · 2015 · PLoS ONE
12. Alterations in Resting State Oscillations and Connectivity in Sensory and Motor Networks in Women with Interstitial Cystitis/Painful Bladder Syndrome
    Lisa Ann Kilpatrick, Jason J. Kutch, Kirsten Tillisch, Bruce D. Naliboff, Jennifer S. Labus, Zhiguo Jiang, Melissa A. Farmer, A. Vania Apkarian, Sean Mackey, Katherine T. Martucci et al. · 2014 · The Journal of Urology
13. Working memory and language network dysfunctions in logopenic aphasia: a task-free fMRI comparison with Alzheimer's dementia
    Jennifer Louise Whitwell, David Thomas Jones, Joseph R. Duffy, Edythe A. Strand, Mary M. Machulda, Scott A. Przybelski, Prashanthi Vemuri, Brian E. Gregg, Jeffrey L. Gunter, Matthew L. Senjem et al. · 2014 · Neurobiology of Aging
14. Atypical developmental of dorsal and ventral attention networks in autism
    Kristafor Farrant, Lucina Q. Uddin · 2015 · Developmental Science
15. Abnormal default-mode network homogeneity in first-episode, drug-naive schizophrenia at rest
    Wenbin Guo, Dapeng Yao, Jiajing Jiang, Qinji Su, Zhikun Zhang, Jian Zhang, Liuyu Yu, Changqing Xiao · 2013 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
16. Interoception primes emotional processing: multimodal evidence from neurodegeneration
    Salamone, Paula C., Legaz, Agustina, Sedeño, Lucas, Moguilner, Sebastián, Fraile-Vazquez, Matías, Campo, Cecilia Gonzalez, Fittipaldi, Sol, Yoris, Adrián, Miranda, Magdalena, Birba, Agustina et al. · 2021 · The Journal of Neuroscience
17. A hierarchy of timescales explains distinct effects of local inhibition of primary visual cortex and frontal eye fields
    Luca Cocchi, Martin V. Sale, Leonardo L. Gollo, Peter T. Bell, Vinh Thai Nguyen, Andrew Zalesky, Michael J Breakspear, Jason B. Mattingley · 2016 · eLife
18. Shared and Distinct Functional Architectures of Brain Networks Across Psychiatric Disorders
    Mingrui Xia, Fay Y. Womer, Miao Chang, Yue Zhu, Qian Zhou, Elliot Kale Edmiston, Xiaowei Jiang, Shengnan Wei, Jia Duan, Ke Xu et al. · 2018 · Schizophrenia Bulletin
19. Common and distinct brain networks underlying verbal and visual creativity
    Wenfeng Zhu, Qunlin Chen, Ling‐Xiang Xia, Roger E. Beaty, Wenjing Yang, Fang Tian, Jiangzhou Sun, Guikang Cao, Qinglin Zhang, Xu Chen et al. · 2017 · Human Brain Mapping
20. Altered Resting-State Frontoparietal Control Network in Children with Attention-Deficit/Hyperactivity Disorder
    Lin, Hsiang-Yuan, Tseng, Wen-Yih Isaac, Lai, Meng-Chuan, Matsuo, Kayako, Gau, Susan Shur-Fen · 2015 · Journal of the International Neuropsychological Society
21. Common intrinsic connectivity states among posteromedial cortex subdivisions: Insights from analysis of temporal dynamics
    Zhen Yang, Richard Cameron Craddock, Daniel S. Margulies, Chao‐Gan Yan, Michael Peter Milham · 2014 · NeuroImage
22. Regional homogeneity of resting state fMRI signals predicts Stop signal task performance
    Lixia Tian, Juejing Ren, Yu‐Feng Zang · 2011 · NeuroImage
23. Diagnostic Discontinuity in Psychosis: A Combined Study of Cortical Gyrification and Functional Connectivity
    Lena K. Palaniyappan, Peter Francis Liddle · 2013 · Schizophrenia Bulletin
24. Targeted transcranial theta-burst stimulation alters fronto-insular network and prefrontal GABA
    Sarina Jennifer Iwabuchi, Felix Raschke, Dorothee P. Auer, Peter Francis Liddle, Sudheer T. Lankappa, Lena K. Palaniyappan · 2016 · NeuroImage
25. Brain functional connectivity in headache disorders: A narrative review of MRI investigations
    Catherine Daniela Chong, Todd J. Schwedt, Anders Hougaard · 2017 · Journal of Cerebral Blood Flow & Metabolism
26. Dynamic functional connectivity analysis reveals decreased variability of the default‐mode network in developing autistic brain
    Changchun He, Yanchi Chen, Taorong Jian, Heng Chen, Xiaonan Guo, Jia Wang, Lijie Wu, Huafu Chen, Xujun Duan · 2018 · Autism Research
27. Differentiation of Alzheimer's disease based on local and global parameters in personalized Virtual Brain models
    Joelle Zimmermann, Alistair Perry, Michael J Breakspear, Michael Schirner, Perminder Singh Sachdev, W. Wen, Nicole A. Kochan, M. Mapstone, Petra Ritter, Anthony Randal McIntosh et al. · 2018 · NeuroImage Clinical
28. Test–retest stability analysis of resting brain activity revealed by blood oxygen level‐dependent functional MRI
    Zhengjun Li, Aniseh Kadivar, John B. Pluta, John Dunlop, Ze Wang · 2012 · Journal of Magnetic Resonance Imaging
29. Graph theoretical analysis reveals disrupted topological properties of whole brain functional networks in temporal lobe epilepsy
    Junjing Wang, Shijun Qiu, Yong Xu, Zhenyin Liu, Xue Wen, Xiangshu Hu, Ruibin Zhang, Meng Li, Wensheng Wang, Ruiwang Huang · 2014 · Clinical Neurophysiology
30. Sampling Rate Effects on Resting State fMRI Metrics
    Niko Huotari, Lauri Raitamaa, Heta Helakari, Janne Kananen, Ville Raatikainen, Aleksi Rasila, Timo Tuovinen, Jussi Kantola, Viola Borchardt, Vesa J. Kiviniemi et al. · 2019 · Frontiers in Neuroscience
31. A practical Alzheimer’s disease classifier via brain imaging-based deep learning on 85,721 samples
    Bin Lu, Huixian Li, Zhikai Chang, Le Li, Ning-Xuan Chen, Zhi-Chen Zhu, Huixia Zhou, Xueying Li, Yuwei Wang, Shi‐Xian Cui et al. · 2022 · Journal Of Big Data
32. Large-scale resting state network correlates of cognitive impairment in Parkinson's disease and related dopaminergic deficits
    Alexander V. Lebedev, Eric Westman, Andrew Simmons, A. Lebedeva, Françoise J. Siepel, Joana B. Pereira, Dag Aarsland · 2014 · Frontiers in Systems Neuroscience
33. Association of thalamic hyperactivity with treatment-resistant depression and poor response in early treatment for major depression: a resting-state fMRI study using fractional amplitude of low-frequency fluctuations
    Takanao Yamamura, Yasumasa Okamoto, Go Okada, Y Takaishi, Masahiro Takamura, Akio Mantani, Akiko Kurata, Yoko Otagaki, Hidehisa Yamashita, Shigeto Yamawaki · 2016 · Translational Psychiatry
34. Discriminating Bipolar Disorder From Major Depression Based on SVM-FoBa: Efficient Feature Selection With Multimodal Brain Imaging Data
    Nanfeng Jie, Maohu Zhu, Xiaoying Ma, Elizabeth A. Osuch, Michael Wammes, Jean Théberge, Huan-Dong Li, Yu Zhang, Tianzi Jiang, Jing Sui （Beijing Normal University）， my correct affiliation is beijing normal university, not Qingdao University of Science and Technology, please correct the current affiliation. Thank you et al. · 2015 · IEEE Transactions on Autonomous Mental Development
35. Functional connectivity profile of the human inferior frontal junction: involvement in a cognitive control network
    Sundermann, Benedikt, Pfleiderer, Bettina · 2012 · BMC Neuroscience
36. Hemodynamic and metabolic correspondence of resting-state voxel-based physiological metrics in healthy adults
    Shengwen Deng, Crystal G. Franklin, Michael W. O’Boyle, Wei Zhang, Betty L. Heyl, Paul A. Jerabek, Hanzhang Lu, Peter T. Fox · 2022 · NeuroImage
37. Resting-state functional connectivity of the default mode network associated with happiness
    Yangmei Luo, Feng Kong, Senqing Qi, Xuqun You, Xiting Huang · 2015 · Social Cognitive and Affective Neuroscience
38. The neural correlates of tic inhibition in Gilles de la Tourette syndrome
    Ganos, Christos, Kahl, Ursula, Brandt, Valerie, Schunke, Odette, Bäumer, Tobias, Thomalla, Götz, Roessner, Veit, Haggard, Patrick, Münchau, Alexander, Kühn, Simone · 2014 · Neuropsychologia
39. Amplitude of low-frequency fluctuation (ALFF) and fractional ALFF in migraine patients: a resting-state functional MRI study
    Jingjie Wang, X. Chen, Shambhu Kumar Sah, Chun Zeng, Y.-m. Li, N. Li, M.-q. Liu, Silin Du · 2016 · Clinical Radiology
40. Frequency-dependent changes in local intrinsic oscillations in chronic primary insomnia: A study of the amplitude of low-frequency fluctuations in the resting state
    Fuqing Zhou, Suhua Huang, Ying Zhuang, Lei Gao, Honghan Gong · 2016 · NeuroImage Clinical
41. Integrating machining learning and multimodal neuroimaging to detect schizophrenia at the level of the individual
    Du Lei, Walter Hugo Lopez Pinaya, Jonathan Young, Thérèse van Amelsvoort, Machteld C. Marcelis, Gary J Donohoe, David Mothersill, Aiden Peter Corvin, Sandra Vieira, Xiaoqi Huang et al. · 2019 · Human Brain Mapping
42. Abnormal Default-Mode Network Homogeneity in First-Episode, Drug-Naive Major Depressive Disorder
    Wenbin Guo, Feng Liu, Jian Zhang, Zhikun Zhang, Liuyu Yu, Jianrong Liu, Huafu Chen, Changqing Xiao · 2014 · PLoS ONE
43. Compromised hippocampus‐striatum pathway as a potential imaging biomarker of mild‐traumatic brain injury and posttraumatic stress disorder
    D. Rangaprakash, Gopikrishna Deshpande, Thomas A. Daniel, Adam M. Goodman, Jennifer L. Robinson, Nouha Salibi, Jeffrey S. Katz, Thomas S. Denney, Michael N. Dretsch · 2017 · Human Brain Mapping
44. Multiple-Network Classification of Childhood Autism Using Functional Connectivity Dynamics
    True Price, Chong-yaw Wee A, Wei Gao, Dinggang G. Shen · 2014 · Lecture notes in computer science
45. Enhanced Functional Connectivity between Putamen and Supplementary Motor Area in Parkinson’s Disease Patients
    Rongjun Yu, Bo Liu, Lingling Wang, Jun Chen, Xian Liu · 2013 · PLoS ONE
46. Aberrant development of intrinsic brain activity in a rat model of caregiver maltreatment of offspring
    Chao‐Gan Yan, Millie Rincón‐Cortés, Charlis Raineki, Emma C. Sarro, Stan J. Colcombe, David N. Guilfoyle, Zhen Yang, Scott V. Gerum, Bharat B. Biswal, Michael Peter Milham et al. · 2017 · Translational Psychiatry
47. XCP-D: A robust pipeline for the post-processing of fMRI data
    Kahini Mehta, T. Salo, Thomas J. Madison, A. Adebimpe, Danielle S. Bassett, Max Bertolero, Matthew Cieslak, S. Covitz, Audrey Houghton, Arielle S. Keller et al. · 2024 · Imaging Neuroscience
48. Abnormal Resting-State Functional Connectivity Strength in Mild Cognitive Impairment and Its Conversion to Alzheimer’s Disease
    Li, Yuxia, Wang, Xiaoni, Li, Yongqiu, Sun, Yu, Sheng, Can, Li, Hongyan, Li, Xuanyu, Yu, Yang, Chen, Guanqun, Hu, Xiaochen et al. · 2016 · Neural Plasticity
49. Modulation of functional activity and connectivity by acupuncture in patients with Alzheimer disease as measured by resting-state fMRI
    Weimin Zheng, Zhuang-zhi Su, Xingyun Liu, Hao Zhang, Ying Han, Haiqing Song, Jie Lu, Kuncheng Li, Zhi­qun Wang · 2018 · PLoS ONE
50. Gray matter volume abnormalities in type 2 diabetes mellitus with and without mild cognitive impairment
    Yanwei Zhang, Xiao Zhang, Jiuquan Zhang, Chen Liu, Qiao‐Ying Yuan, Xuntao Yin, Luqing Wei, Jinguo Cui, Ran Tao, Ping Wei et al. · 2014 · Neuroscience Letters
51. Resting-State Networks as Simultaneously Measured with Functional MRI and PET
    Alexandre M. Savio, Sarah Maria Fünger, Masoud Tahmasian, Srinivas Rachakonda, Andrei Manoliu, Christian Sorg, Timo Grimmer, Vince D. Calhoun, Alexander E. Drzezga, Valentin Riedl et al. · 2017 · Journal of Nuclear Medicine
52. Altered brain network centrality in depressed Parkinson's disease patients
    Yuting Lou, Peiyu Huang, Dan Li, Zhidong Cen, Bo Wang, Jixiang Gao, Min Xuan, Hualiang Yu, Minming Zhang, Wei Feng Luo · 2015 · Movement Disorders
53. Detecting Alzheimer's Disease on Small Dataset: A Knowledge Transfer Perspective
    Wei Li, Yifei Zhao, Xi Chen, Yang Xiao, Yuanyuan Qin · 2018 · IEEE Journal of Biomedical and Health Informatics
54. Functional connectivity between the thalamus and the primary somatosensory cortex in major depressive disorder: a resting-state fMRI study
    Lijun Kang, Ai‐Xia Zhang, Ning Sun, Penghong Liu, Chunxia Yang, Gaizhi Li, Zhifen Liu, Yanfang Wang, Kerang Zhang · 2018 · BMC Psychiatry
55. Altered Directed Functional Connectivity of the Hippocampus in Mild Cognitive Impairment and Alzheimer’s Disease: A Resting-State fMRI Study
    Jiayue Xue, Hao Guo, Yuan Gao, Xin Wang, Huifang Cui, Zeci Chen, Bin Wang, Jie Xiang · 2019 · Frontiers in Aging Neuroscience
56. Intrinsic connectivity networks from childhood to late adolescence: Effects of age and sex
    Cristina Solé‐Padullés, Josefina Castro‐Fornieles, Elena de la Serna, Rosa M Calvo, Inmaculada Baeza, Jaime Moyá, Luisa Lázaro, Mireia Rosa, Núria Bargalló, Gisela Sugranyes · 2015 · Developmental Cognitive Neuroscience
57. Essential tremor is associated with disruption of functional connectivity in the ventral intermediate Nucleus-Motor Cortex-Cerebellum circuit
    Weidong Fang, Huiyue Chen, Hansheng Wang, Han Zhang, Munankami Puneet, Mengqi Liu, Fajin Lv, Tianyou Luo, Oumei Cheng, Xuefeng Wang et al. · 2015 · Human Brain Mapping
58. Disrupted resting-state functional connectivity in minimally treated chronic schizophrenia
    Xijin Wang, Mingrui Xia, Yunyao Lai, Zhengjia Dai, Qingjiu Cao, Cheng Zhang, Xue Han, Lei Yang, Yanbo Yuan, Yong Zhang et al. · 2014 · Schizophrenia Research
59. How does language distance between L1 and L2 affect the L2 brain network? An fMRI study of Korean–Chinese–English trilinguals
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60. Neural Substrates of Auditory Emotion Recognition Deficits in Schizophrenia
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61. Intranasal insulin enhances brain functional connectivity mediating the relationship between adiposity and subjective feeling of hunger
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62. Exercise restores brain insulin sensitivity in sedentary adults who are overweight and obese
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63. Eyes-Open/Eyes-Closed Dataset Sharing for Reproducibility Evaluation of Resting State fMRI Data Analysis Methods
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64. Partially impaired functional connectivity states between right anterior insula and default mode network in autism spectrum disorder
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65. Self-calibrated brain network estimation and joint non-convex multi-task learning for identification of early Alzheimer's disease
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66. Disrupted Brain Functional Network in Internet Addiction Disorder: A Resting-State Functional Magnetic Resonance Imaging Study
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67. Network analysis reveals disrupted functional brain circuitry in drug-naive social anxiety disorder
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68. Identifying differences in brain activities and an accurate detection of autism spectrum disorder using resting state functional-magnetic resonance imaging : A spatial filtering approach
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69. Default Mode and Executive Networks Areas: Association with the Serial Order in Divergent Thinking
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70. A multidimensional and multi-feature framework for cardiac interoception
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71. Mapping Domain-Selective and Counterpointed Domain-General Higher Cognitive Functions in the Lateral Parietal Cortex: Evidence from fMRI Comparisons of Difficulty-Varying Semantic Versus Visuo-Spatial Tasks, and Functional Connectivity Analyses
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72. Local functional connectivity alterations in schizophrenia, bipolar disorder, and major depressive disorder
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73. Altered inter‐ and intrahemispheric functional connectivity dynamics in autistic children
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74. DPABISurf: data processing & analysis for brain imaging on surface
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75. Abnormal Regional Homogeneity in Patients with Essential Tremor Revealed by Resting-State Functional MRI
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76. Is there a cerebellar compensatory effort in first-episode, treatment-naive major depressive disorder at rest?
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77. Resting-state fMRI correlations: From link-wise unreliability to whole brain stability
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78. Decreased resting‐state brain activity complexity in schizophrenia characterized by both increased regularity and randomness
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79. Spontaneous Brain Activity Predicts Learning Ability of Foreign Sounds
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80. Recover from the adversity: functional connectivity basis of psychological resilience
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81. Abnormal spontaneous regional brain activity in primary insomnia: a resting-state functional magnetic resonance imaging study
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82. Sample entropy reveals an age-related reduction in the complexity of dynamic brain
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83. Repetitive transcranial magnetic stimulation (rTMS) of the dorsolateral prefrontal cortex reduces resting-state insula activity and modulates functional connectivity of the orbitofrontal cortex in cigarette smokers
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84. Altered connectivity within and between the default mode, central executive, and salience networks in obsessive-compulsive disorder
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85. Resting-state regional homogeneity as a biological marker for patients with Internet gaming disorder: A comparison with patients with alcohol use disorder and healthy controls
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86. Abnormal regional homogeneity as a potential imaging biomarker for adolescent-onset schizophrenia: A resting-state fMRI study and support vector machine analysis
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87. Precuneus-related regional and network functional deficits in social anxiety disorder: A resting-state functional MRI study
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88. Altered dynamic functional connectivity in weakly-connected state in major depressive disorder
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89. Fronto-limbic neural variability as a transdiagnostic correlate of emotion dysregulation
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90. Aberrant salience network functional connectivity in auditory verbal hallucinations: a first episode psychosis sample
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91. Diffusion Kernel Attention Network for Brain Disorder Classification
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92. Neuroplastic changes in resting-state functional connectivity after stroke rehabilitation
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93. Aberrant connectivity within the default mode network in first-episode, treatment-naïve major depressive disorder
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94. Functional network alterations and their structural substrate in drug-resistant epilepsy
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95. Causal relationship between effective connectivity within the default mode network and mind-wandering regulation and facilitation
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96. Generalized Tonic-Clonic Seizures: Aberrant Interhemispheric Functional and Anatomical Connectivity
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97. Decreased Intra- and Inter-Salience Network Functional Connectivity is Related to Trait Anxiety in Adolescents
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98. Relationship between functional connectivity and motor function assessment in stroke patients with hemiplegia: a resting-state functional MRI study
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99. Dysfunctional Brain Networking among Autonomic Regulatory Structures in Temporal Lobe Epilepsy Patients at High Risk of Sudden Unexpected Death in Epilepsy
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100. The effect of aerobic dance intervention on brain spontaneous activity in older adults with mild cognitive impairment: A resting‑state functional MRI study
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