Molecular Mechanisms of Bortezomib Action: Novel Evidence for the miRNA–mRNA Interaction Involvement
Open accessAbstract
Bortezomib is an anti-tumor agent, which inhibits 26S proteasome degrading ubiquitinated proteins. While apoptotic transcription-associated activation in response to bortezomib has been suggested, mechanisms related to its influence on post-transcriptional gene silencing mediated regulation by non-coding RNAs remain not fully elucidated. In the present study, we examined changes in global gene and miRNA expression and analyzed the identified miRNA–mRNA interactions after bortezomib exposure in human neuroblastoma cells to define pathways affected by this agent in this type of cells. Cell viability assays were performed to assess cytotoxicity of bortezomib. Global gene and miRNA expression profiles of neuroblastoma cells after 24-h incubation with bortezomib were determined using genome-wide RNA and miRNA microarray technology. Obtained results were then confirmed by qRT-PCR and Western blot. Further bioinformatical analysis was performed to identify affected biological processes and pathways. In total, 719 genes and 28 miRNAs were downregulated, and 319 genes and 61 miRNAs were upregulated in neuroblastoma cells treated with bortezomib. Possible interactions between dysregulated miRNA/mRNA, which could be linked to bortezomib-induced neurotoxicity, affect neurogenesis, cellular calcium transport, and neuron death. Bortezomib might exert toxic effects on neuroblastoma cells and regulate miRNA–mRNA interactions influencing vital cellular functions. Further studies on the role of specific miRNA–mRNA interactions are needed to elucidate mechanisms of bortezomib action.
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Proteasome inhibitor treatment alters miRNAs.
“Proteasome inhibitor leads to alteration in not only the proteins but also the miRNAs (12, 13).”
From miR-33b-3p Acts as a Tumor Suppressor by Targeting DOCK4 in Prostate Cancer (2021) · cites this paper as [13]
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Cheung, Y.-T., Lau, W. K.-W., Yu, M.-S., Lai, C. S.-W., Yeung, S.-C., So, K.-F., & Chang, R. C.-C. (2009) · NeuroToxicology · doi:10.1016/j.neuro.2008.11.001 · Cited by 576 · see citing works
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- [1]Tanaka K. The proteasome: Overview of structure and functions Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 2009 85 12 36 10.2183/pjab.85.12 PMC3524306 19145068 · DOI · Paper page
- [2]Almond J.B. Cohen G.M. The proteasome: A novel target for cancer chemotherapy Leukemia 2002 16 433 443 10.1038/sj.leu.2402417 11960320 · DOI
- [3]Chen D. Frezza M. Schmitt S. Kanwar J. Dou Q.P. Bortezomib as the first proteasome inhibitor anticancer drug: Current status and future perspectives Curr. Cancer Drug Targets 2011 11 239 253 10.2174/156800911794519752 21247388 PMC3306611 · DOI
- [4]Huang Z. Wu Y. Zhou X. Xu J. Zhu W. Shu Y. Liu P. Efficacy of therapy with bortezomib in solid tumors: A review based on 32 clinical trials Future Oncol. 2014 10 1795 1807 10.2217/fon.14.30 25303058 · DOI
- [5]Caravita T. de Fabritiis P. Palumbo A. Amadori S. Boccadoro M. Bortezomib: Efficacy comparisons in solid tumors and hematologic malignancies Nat. Clin. Pr. Oncol. 2006 3 374 387 10.1038/ncponc0555 16826218 · DOI
- [6]Wang J. Jiang J. Chen H. Wang L. Guo H. Yang L. Xiao D. Qing G. Liu H. Fda-approved drug screen identifies proteasome as a synthetic lethal target in myc-driven neuroblastoma Oncogene 2019 38 6737 6751 10.1038/s41388-019-0912-5 31406244 · DOI
- [7]Meregalli C. An overview of bortezomib-induced neurotoxicity Toxics 2015 3 294 303 10.3390/toxics3030294 29051465 PMC5606681 · DOI
- [8]Lasker K. Forster F. Bohn S. Walzthoeni T. Villa E. Unverdorben P. Beck F. Aebersold R. Sali A. Baumeister W. Molecular architecture of the 26s proteasome holocomplex determined by an integrative approach Proc. Natl. Acad. Sci. USA 2012 109 1380 1387 10.1073/pnas.1120559109 22307589 PMC3277140 · DOI
- [9]Ballabio E. Armesto M. Breeze C.E. Manterola L. Arestin M. Tramonti D. Hatton C.S.R. Lawrie C.H. Bortezomib action in multiple myeloma: Microrna-mediated synergy (and mir-27a/cdk5 driven sensitivity)? Blood Cancer J. 2012 2 e83 10.1038/bcj.2012.31 22922378 PMC3432485 · DOI
- [10]Łuczkowska K. Litwińska Z. Paczkowska E. Machaliński B. Pathophysiology of drug-induced peripheral neuropathy in multiple myeloma patients J. Physiol. Pharmacol. 2018 69 165 172 29920472
- [11]Morawska M. Grzasko N. Kostyra M. Wojciechowicz J. Hus M. Therapy-related peripheral neuropathy in multiple myeloma patients Hematol. Oncol. 2014 33 113 119 10.1002/hon.2149 25399783 · DOI
- [12]Chu Y.-Y. Ko C.-Y. Wang S.-M. Lin P.-I. Wang H.-Y. Lin W.-C. Wu D.-Y. Wang L.-H. Wang J.-M. Bortezomib-induced mirnas direct epigenetic silencing of locus genes and trigger apoptosis in leukemia Cell Death Dis. 2017 8 e3167 10.1038/cddis.2017.520 29120412 PMC5775404 · DOI
- [13]Wang J. Chen J. Sen S. Microrna as biomarkers and diagnostics J. Cell Physiol. 2016 231 25 30 10.1002/jcp.25056 26031493 PMC8776330 · DOI · Paper page
- [14]Wang X. Li C. Ju S. Wang Y. Wang H. Zhong R. Myeloma cell adhesion to bone marrow stromal cells confers drug resistance by microrna-21 up-regulation Leuk Lymphoma 2011 52 1991 1998 10.3109/10428194.2011.591004 21718132 · DOI · Paper page
- [15]Litwińska Z. Machaliński B. Mirnas in chronic myeloid leukemia: Small molecules, essential function Leuk Lymphoma 2017 58 1297 1305 10.1080/10428194.2016.1243676 27736267 · DOI
- [16]Sobus A. Baumert B. Litwinska Z. Golab-Janowska M. Stepniewski J. Kotowski M. Pius-Sadowska E. Kawa M.P. Grodecka-Szwajkiewicz D. Peregud-Pogorzelski J. Safety and feasibility of lin- cells administration to als patients: A novel view on humoral factors and mirna profiles Int. J. Mol. Sci. 2018 19 1312 10.3390/ijms19051312 PMC5983708 29702606 · DOI
- [17]Schraml E. Hackl M. Grillari J. Micrornas and toxicology: A love marriage Toxicol. Rep. 2017 4 634 636 10.1016/j.toxrep.2017.11.001 29214146 PMC5695539 · DOI
- [18]Nunes A.T. Annunziata C.M. Proteasome inhibitors: Structure and function Semin Oncol. 2017 44 377 380 10.1053/j.seminoncol.2018.01.004 29935898 PMC6020165 · DOI
- [19]Accardi F. Toscani D. Bolzoni M. Dalla Palma B. Aversa F. Giuliani N. Mechanism of action of bortezomib and the new proteasome inhibitors on myeloma cells and the bone microenvironment: Impact on myeloma-induced alterations of bone remodeling Biomed. Res. Int. 2015 2015 172458 10.1155/2015/172458 26579531 PMC4633537 · DOI
- [20]Li Z. Xu Z. Xie Q. Gao W. Xie J. Zhou L. Mir-1303 promotes the proliferation of neuroblastoma cell sh-sy5y by targeting gsk3beta and sfrp1 Biomed. Pharm. 2016 83 508 513 10.1016/j.biopha.2016.07.010 27434867 · DOI
- [21]Ming G.L. Song H. Adult neurogenesis in the mammalian brain: Significant answers and significant questions Neuron 2011 70 687 702 10.1016/j.neuron.2011.05.001 21609825 PMC3106107 · DOI · Paper page
- [23]Winther M. Berezin V. Walmod P.S. Ncam2/ocam/rncam: Cell adhesion molecule with a role in neuronal compartmentalization Int. J. Biochem. Cell Biol. 2012 44 441 446 10.1016/j.biocel.2011.11.020 22155300 · DOI
- [24]Schaker K. Bartsch S. Patry C. Stoll S.J. Hillebrands J.L. Wieland T. Kroll J. The bipartite rac1 guanine nucleotide exchange factor engulfment and cell motility 1/dedicator of cytokinesis 180 (elmo1/dock180) protects endothelial cells from apoptosis in blood vessel development J. Biol. Chem. 2015 290 6408 6418 10.1074/jbc.M114.633701 25586182 PMC4358276 · DOI
- [25]Sharma K.R. Heckler K. Stoll S.J. Hillebrands J.L. Kynast K. Herpel E. Porubsky S. Elger M. Hadaschik B. Bieback K., et al. Elmo1 protects renal structure and ultrafiltration in kidney development and under diabetic conditions Sci. Rep. 2016 6 37172 10.1038/srep37172 27849017 PMC5111104 · DOI
- [26]Bartesaghi L. Arnaud Gouttenoire E. Prunotto A. Medard J.J. Bergmann S. Chrast R. Sox4 participates in the modulation of schwann cell myelination Eur. J. Neurosci. 2015 42 1788 1796 10.1111/ejn.12929 25899854 · DOI
- [27]Zainolabidin N. Kamath S.P. Thanawalla A.R. Chen A.I. Distinct activities of tfap2a and tfap2b in the specification of gabaergic interneurons in the developing cerebellum Front. Mol. Neurosci. 2017 10 281 10.3389/fnmol.2017.00281 28912684 PMC5583517 · DOI
- [28]Sotillo E. Laver T. Mellert H. Schelter J.M. Cleary M.A. McMahon S. Thomas-Tikhonenko A. Myc overexpression brings out unexpected antiapoptotic effects of mir-34a Oncogene 2011 30 2587 2594 10.1038/onc.2010.634 21297663 PMC3128883 · DOI
- [29]Boutin C. Schmitz B. Cremer H. Diestel S. Ncam expression induces neurogenesis in vivo Eur. J. Neurosci. 2009 30 1209 1218 10.1111/j.1460-9568.2009.06928.x 19788570 · DOI
- [30]Wang J.H. Zhou W.W. Liu B.X. Man D.L. Yang Z.D. Liu F.R. Shang H. Expression and significance of mir-21 in multiple myeloma patients Genet. Mol. Res. 2016 15 gmr.15016892 10.4238/gmr.15016892 26909911 · DOI
- [31]Yang S. Wang W. Jin H. Zhong Y. Xie X. [expression of microrna-221/222 in patients with monoclonal gammopathy of undetermined significance and multiple myeloma] Zhejiang Da Xue Xue Bao Yi Xue Ban 2016 45 371 378 27868410 PMC10397103
- [32]Giorgi C. Baldassari F. Bononi A. Bonora M. De Marchi E. Marchi S. Missiroli S. Patergnani S. Rimessi A. Suski J.M. Mitochondrial ca(2+) and apoptosis Cell Calcium 2012 52 36 43 10.1016/j.ceca.2012.02.008 22480931 PMC3396846 · DOI
- [33]Siau C. Bennett G.J. Dysregulation of cellular calcium homeostasis in chemotherapy-evoked painful peripheral neuropathy Anesth Analg. 2006 102 1485 1490 10.1213/01.ane.0000204318.35194.ed 16632831 PMC1805480 · DOI
- [34]Wei H. The role of calcium dysregulation in anesthetic-mediated neurotoxicity Anesth. Analg. 2011 113 972 974 10.1213/ANE.0b013e3182323261 22021793 PMC3201768 · DOI
- [35]Landowski T.H. Megli C.J. Nullmeyer K.D. Lynch R.M. Dorr R.T. Mitochondrial-mediated disregulation of ca2+ is a critical determinant of velcade (ps-341/bortezomib) cytotoxicity in myeloma cell lines Cancer Res. 2005 65 3828 3836 10.1158/0008-5472.CAN-04-3684 15867381 · DOI
- [36]Landowski T.H. Megli C.J. Dorr R.T. Dalton W.S. Calcium-mediated mitochondrial perturbation is a critical determinant of velcade (ps-341/bortezomib) cytotoxicity in myeloma cell lines Proc. Amer. Assoc. Cancer Res. 2004 67 520 15867381
- [37]Zhuang G.Z. Keeler B. Grant J. Bianchi L. Fu E.S. Zhang Y.P. Erasso D.M. Cui J.G. Wiltshire T. Li Q. Carbonic anhydrase-8 regulates inflammatory pain by inhibiting the itpr1-cytosolic free calcium pathway PLoS ONE 2015 10 e0118273 10.1371/journal.pone.0118273 25734498 PMC4347988 · DOI
- [38]Cunin P. Beauvillain C. Miot C. Augusto J.F. Preisser L. Blanchard S. Pignon P. Scotet M. Garo E. Fremaux I. Clusterin facilitates apoptotic cell clearance and prevents apoptotic cell-induced autoimmune responses Cell Death Dis. 2016 7 e2215 10.1038/cddis.2016.113 27148688 PMC4917652 · DOI
- [39]Sarma S.N. Kim Y.J. Song M. Ryu J.C. Induction of apoptosis in human leukemia cells through the production of reactive oxygen species and activation of hmox1 and noxa by benzene, toluene, and o-xylene Toxicology 2011 280 109 117 10.1016/j.tox.2010.11.017 21144877 · DOI
- [40]Lamkanfi M. Kanneganti T.D. Caspase-7: A protease involved in apoptosis and inflammation Int. J. Biochem. Cell Biol. 2010 42 21 24 10.1016/j.biocel.2009.09.013 19782763 PMC2787741 · DOI
- [41]Li T. Su L. Lei Y. Liu X. Zhang Y. Ddit3 and kat2a proteins regulate tnfrsf10a and tnfrsf10b expression in endoplasmic reticulum stress-mediated apoptosis in human lung cancer cells J. Biol. Chem. 2015 290 11108 11118 10.1074/jbc.M115.645333 25770212 PMC4409269 · DOI
- [42]Larner S.F. McKinsey D.M. Hayes R.L. KK W.W. Caspase 7: Increased expression and activation after traumatic brain injury in rats J. Neurochem. 2005 94 97 108 10.1111/j.1471-4159.2005.03172.x 15953353 · DOI
- [43]Park J. Ahn K.S. Bae E.K. Kim B.S. Kim B.K. Lee Y.Y. Yoon S.S. Blockage of interleukin-6 signaling with 6-amino-4-quinazoline synergistically induces the inhibitory effect of bortezomib in human u266 cells Anticancer Drugs 2008 19 777 782 10.1097/CAD.0b013e32830c236a 18690088 · DOI
- [44]Kim J.H. Hong S.K. Wu P.K. Richards A.L. Jackson W.T. Park J.I. Raf/mek/erk can regulate cellular levels of lc3b and sqstm1/p62 at expression levels Exp. Cell Res. 2014 327 340 352 10.1016/j.yexcr.2014.08.001 25128814 PMC4164593 · DOI
- [45]Kuhn D.J. Berkova Z. Jones R.J. Woessner R. Bjorklund C.C. Ma W. Davis R.E. Lin P. Wang H. Madden T.L. Targeting the insulin-like growth factor-1 receptor to overcome bortezomib resistance in preclinical models of multiple myeloma Blood 2012 120 3260 3270 10.1182/blood-2011-10-386789 22932796 PMC3476538 · DOI
- [46]Liu C. Luan S. OuYang H. Huang Z. Wu S. Ma C. Wei J. Xin W. Upregulation of ccl2 via atf3/c-jun interaction mediated the bortezomib-induced peripheral neuropathy Brain Behav. Immun. 2016 53 96 104 10.1016/j.bbi.2015.11.004 26554515 · DOI
- [47]Liu C.C. Lu N. Cui Y. Yang T. Zhao Z.Q. Xin W.J. Liu X.G. Prevention of paclitaxel-induced allodynia by minocycline: Effect on loss of peripheral nerve fibers and infiltration of macrophages in rats Mol. Pain 2010 6 76 10.1186/1744-8069-6-76 21050491 PMC2991291 · DOI
- [48]Bavari M. Tabandeh M.R. Najafzadeh Varzi H. Bahramzadeh S. Neuroprotective, antiapoptotic and antioxidant effects of l-carnitine against caffeine-induced neurotoxicity in sh-sy5y neuroblastoma cell line Drug Chem. Toxicol. 2016 39 157 166 10.3109/01480545.2015.1063062 26136110 · DOI
- [50]Britton M. Lucas M.M. Downey S.L. Screen M. Pletnev A.A. Verdoes M. Tokhunts R.A. Amir O. Goddard A.L. Pelphrey P.M. Selective inhibitor of proteasome’s caspase-like sites sensitizes cells to specific inhibition of chymotrypsin-like sites Chem. Biol. 2009 16 1278 1289 10.1016/j.chembiol.2009.11.015 20064438 PMC2807417 · DOI
- [51]Shabaneh T.B. Downey S.L. Goddard A.L. Screen M. Lucas M.M. Eastman A. Kisselev A.F. Molecular basis of differential sensitivity of myeloma cells to clinically relevant bolus treatment with bortezomib PLoS ONE 2013 8 e56132 10.1371/journal.pone.0056132 23460792 PMC3584083 · DOI
- [52]Gautier L. Cope L. Bolstad B.M. Irizarry R.A. Affy—Analysis of affymetrix genechip data at the probe level Bioinformatics 2004 20 307 315 10.1093/bioinformatics/btg405 14960456 · DOI
- [53]Ritchie M.E. Phipson B. Wu D. Hu Y. Law C.W. Shi W. Smyth G.K. Limma powers differential expression analyses for rna-sequencing and microarray studies Nucleic Acids Res. 2015 43 e47 10.1093/nar/gkv007 25605792 PMC4402510 · DOI · Paper page
- [54]Dennis G. Jr. Sherman B.T. Hosack D.A. Yang J. Gao W. Lane H.C. Lempicki R.A. David: Database for annotation, visualization, and integrated discovery Genome Biol. 2003 4 P3 10.1186/gb-2003-4-5-p3 12734009 · DOI · Paper page
- [55]Fresno C. Fernandez E.A. Rdavidwebservice: A versatile r interface to david Bioinformatics 2013 29 2810 2811 10.1093/bioinformatics/btt487 23958726 · DOI
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miR-33b-3p Acts as a Tumor Suppressor by Targeting DOCK4 in Prostate Cancer
Mei, Y., Li, K., Zhang, Z., Li, M., Yang, H., Wang, H., Huang, X., Li, X., Shi, S., & Yang, H. (2021) · Frontiers in Oncology · doi:10.3389/fonc.2021.740452 · Cited by 10 · see citing works
“Proteasome inhibitor leads to alteration in not only the proteins but also the miRNAs (12, 13).”
Background
- Authors
- Łuczkowska, K., Rogińska, D., Ulańczyk, Z., Paczkowska, E., Schmidt, C. A., & Machaliński, B.
- Affiliations
- Pomeranian Medical University (PL)
- Universitätsmedizin Greifswald (DE)
- Corresponding author
- Ulańczyk, Zofia
- Machaliński, Bogusław
- Venue
- International Journal of Molecular Sciences
- Publisher
- MDPI AG
- Published
- 2020-01-05
- Volume
- 21
- Issue
- 1
- Pages
- 350
- ISSN
- 1422-0067 (ISSN-L)
- PMC
- PMC6981510
- OpenAlex
- W2997690038
- Cited by
- 26
- References
- 1
- Citations by year
- 2026: 2 · 2025: 1 · 2024: 2 · 2023: 2 · 2022: 5 · 2021: 9 · 2020: 5
- FWCI
- 1.80
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- International Journal of Molecular Sciences (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Narodowe Centrum Nauki (OPUS 2016/23/N/NZ7/03363)
- European Union Regional Development Fund, Interreg Cooperation Program V A Mecklenburg-Western Pomerania/Brandenburg/Poland for 2014–2020: No INT14 "Consolidation of cross-border cooperation through exchange of knowledge and skills in the field of modern (INT14)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › MicroRNA in disease regulation
- Health Sciences › Medicine › Neurology › Neuroblastoma Research and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer-related molecular mechanisms research
- Keywords
- bortezomib, miRNA-mRNA interactions, neuroblastoma, proteasome inhibition, gene expression profiling, miRNA expression profiling, post-transcriptional regulation, neurotoxicity, neurogenesis, calcium transport, neuronal cell death, cytotoxicity
- MeSH terms
- Bortezomib, Antineoplastic Agents, Calcium, Cell Survival, Humans, Neuroblastoma, RNA, Messenger, Down-Regulation, Up-Regulation, Apoptosis, Computational Biology, Gene Expression Profiling, MicroRNAs, Cell Line, Tumor, Microarray Analysis, Neurogenesis, Gene Ontology
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