Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
Open accessAbstract
Microbial cooperation pervades ecological scales, from single-species populations to host-associated microbiomes. Understanding the mechanisms promoting the stability of cooperation against potential threats by cheaters is a major question that only recently has been approached experimentally. Synthetic biology has helped to uncover some of these basic mechanisms, which were to some extent anticipated by theoretical predictions. Moreover, synthetic cooperation is a promising lead towards the engineering of novel functions and enhanced productivity of microbial communities. Here, we review recent progress on engineered cooperation in microbial ecosystems. We focus on bottom-up approaches that help to better understand cooperation at the population level, progressively addressing the challenges of tackling higher degrees of complexity: spatial structure, multispecies communities, and host-associated microbiomes. We envisage cooperation as a key ingredient in engineering complex microbial ecosystems.
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Incomplete breakdown of PAHs by Pseudomonas spp. can result in the accumulation of benzo[a]pyrene, a known carcinogen.
“Similarly, incomplete breakdown of PAHs by Pseudomonas spp.can result in the accumulation of benzo[a]pyrene, a known carcinogen [305,306,319].”
From Harnessing bacterial consortia for effective bioremediation: targeted removal of heavy metals, hydrocarbons, and persistent pollutants (2025) · cites this paper as [306]
The closest passages in the References section mention Pseudomonas aeruginosa as a pathogen, not as a degrader of PAHs. A search of our copy for benzo[a]pyrene, PAH degradation, and carcinogenic byproducts found no passage addressing the claimed accumulation. (LLM, conf=0.74)
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Human nutrition, the gut microbiome and the immune system
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Cited by
Sorted by citations
Qattan, S. Y. A. (2025) · Environmental Sciences Europe · doi:10.1186/s12302-025-01103-y · Cited by 109 · see citing works
- Authors
- Rodríguez Amor, D., & Dal Bello, M.
- Affiliations
- Physics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Venue
- Life
- Publisher
- MDPI AG
- Published
- 2019-02-26
- Volume
- 9
- Issue
- 1
- Pages
- 22
- ISSN
- 2075-1729 (ISSN-L)
- PMC
- PMC6462982
- OpenAlex
- W2916899223
- Cited by
- 71
- References
- 5
- Citations by year
- 2026: 5 · 2025: 7 · 2024: 13 · 2023: 8 · 2022: 14 · 2021: 12 · 2020: 9 · 2019: 2 · 2018: 1
- FWCI
- 0.85
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- Life (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Social Sciences › Sociology and Political Science › Evolutionary Game Theory and Cooperation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Keywords
- microbial cooperation, cheaters, cooperation stability, synthetic biology, multispecies microbial communities, spatial structure, host-associated microbiome, bottom-up approach
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