Cited by 8Antifungal resistance and susceptibilityFungal and yeast genetics researchFungal Plant Pathogen Control

Known Antimicrobials Versus Nortriptyline in Candida albicans: Repositioning an Old Drug for New Targets

Open access
Caldara, Marina, Marmiroli, Nelson·2020·Microorganisms

Abstract

Candida albicans has the capacity to develop resistance to commonly used antimicrobials, and to solve this problem, drug repositioning and new drug combinations are being studied. Nortriptyline, a tricyclic antidepressant, was shown to have the capacity to inhibit biofilm and hyphae formation, along with the ability to efficiently kill cells in a mature biofilm. To use nortriptyline as a new antimicrobial, or in combination with known drugs to increase their actions, it is important to characterize in more detail the effects of this drug on the target species. In this study, the Candida albicans GRACE™ collection and a Haplo insufficiency profiling were employed to identify the potential targets of nortriptyline, and to classify, in a parallel screening with amphotericin B, caspofungin, and fluconazole, general multi-drug resistance genes. The results identified mutants that, during biofilm formation and upon treatment of a mature biofilm, are sensitive or tolerant to nortriptyline, or to general drug treatments. Gene ontology analysis recognized the categories of ribosome biogenesis and spliceosome as enriched upon treatment with the tricyclic antidepressant, while mutants in oxidative stress response and general stress response were commonly retrieved upon treatment with any other drug. The data presented suggest that nortriptyline can be considered a “new” antimicrobial drug with large potential for application to in vivo infection models.

AI snapshot

Written from the paper’s full text.

TL;DR

Using the *Candida albicans* GRACE™ collection and haploinsufficiency profiling, this study compared nortriptyline with amphotericin B, caspofungin, and fluconazole to identify drug-specific and general multidrug-resistance genes. Nortriptyline showed distinct targets and detox responses, supporting its repositioning as an antimicrobial candidate for in vivo testing.

Key findings

  • In triplicate screening of 2372 GRACE™ strains, 15 mutants were sensitive to nortriptyline only during early biofilm formation, 38 were sensitive in mature biofilm, 44 were tolerant during biofilm formation, and 34 were tolerant in mature biofilm.
  • General drug phenotypes included 26 strains sensitive to all treatments during biofilm formation, 25 sensitive to nortriptyline, amphotericin B, and caspofungin, and five sensitive to all four drugs; 12 mutants were tolerant overall (3 during biofilm formation, 9 in mature biofilm), with six tolerant to all four drugs.
  • Nortriptyline enriched ribosome biogenesis, spliceosome, RNA metabolism, oxidative phosphorylation, and fatty acid biosynthesis categories depending on condition, while known antimicrobials commonly retrieved oxidative stress and general stress response categories.
  • Oxidative/nitrosative assays showed oxidized glutathione with caspofungin and fluconazole, increased nitric oxide in all conditions, and increased ROS and propidium iodide–positive dead cells with nortriptyline and caspofungin; Ames testing found 600 µM nortriptyline increased base-shift revertants but low frameshifts, with no real mutagenic effect at experimental concentrations and reduced mutation frequency with S9.

Methods

  • Chemogenomic haploinsufficiency profiling used the *C. albicans* GRACE™ collection (2372 strains, CaSS1 background) without tetracycline except for selected mutants, screened in parallel with nortriptyline, amphotericin B, caspofungin, and fluconazole at condition A/B concentrations (nortriptyline 10/20 µM, amphotericin B 0.5/1 µM, caspofungin 15/20 µM, fluconazole 200/400 µM).
  • Biofilm assays grew mutants for 90 min, then exposed them to drugs during biofilm formation for 48 h or treated mature biofilms for 48 h; growth was measured spectrophotometrically or by XTT reduction.
  • Additional assays included glutathione and nitric oxide measurements, ROS/propidium iodide flow cytometry, qRT-PCR of transporter genes, Ames testing with *S. typhimurium* TA98 and TA100, and GO/KEGG plus STRING network analysis.

Limitations

  • Stated in the paper: many *C. albicans* genes remain uncharacterized, with functions often putative, predicted, or inferred from *S. cerevisiae*; the role of nitric oxide in yeast and *C. albicans* physiology and nitrosative stress targets still needs clarification; DNA damage was observed only at higher nortriptyline concentrations than those used experimentally.
  • Evident from the text: all experiments are in vitro using one *C. albicans* mutant collection/background and biofilm models, with no in vivo infection model, so clinical potential remains untested.
  • Evident from the text: effects may be concentration- and condition-specific, as screening used selected subinhibitory concentrations and two biofilm stages, and fluconazole had a small impact under the test conditions.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.3390/microorganisms8050742

Cites

48 of 48 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

0 of 21 cited sources checked · 0 supported · 0 flagged

  • Findingown data

    The enriched GO categories for nortriptyline-tolerant mutants during biofilm formation were spliceosome system, mismatch repair/DNA replication, and histidine metabolism.

    “The spliceosome system, mismatch repair/DNA replication, and histidine metabolism were the enriched GO categories (Figure 2c).”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • Findingown data

    The addition of S9 liver fraction reduced the mutation rate frequency to that of the control.

    “The addition of S9 liver fraction reduced the mutation rate frequency to that of the control.”
    Quote in the paperNot a substantial claim
  • Findingown data

    The highest concentrations of nortriptyline tested (600 μM) induced a low increase in frameshifts.

    “The Ames test with S. typhimurium TA98 and TA100 was performed and the data in Supplementary Table S6 showed that the highest concentrations of NOR tested (600 µM) induced an increase in base shift revertants, but a low increase in frameshifts.”
    Quote in the paperNot a substantial claim
  • Findingown data

    Network analysis of the 38 mature-biofilm nortriptyline-sensitive mutants revealed enrichment in genes related to spliceosome activity, ribosome machinery, and fatty acid biosynthesis.

    “Network analysis for these revealed an enrichment in genes related to spliceosome activity, ribosome machinery, and fatty acid biosynthesis (Figure 2b).”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • Findingown data

    Beside NOR, CAS was the most effective drug in the conditions tested.

    “Beside NOR, the most effective drug in the conditions tested was CAS”
    Quote in the paperNot a substantial claim
  • May combine two claims. 13
  • The quote only partly states this claim. 8
  • Classified as probably not a substantial claim. 7
  • May combine two claims.

    Findingnone given

    Targets of NOR include ribosome biogenesis and machinery, RNA binding, and the RNA splicing apparatus.

    “Targets of NOR are also ribosome biogenesis and machinery, RNA binding, and the RNA splicing apparatus.”
    Quote in the paperSubstantial claim
  • The quote only partly states this claim.

    Findingown data

    CDR2 and 19.304 are upregulated in the presence of amphotericin B and caspofungin after 24 h.

    “NAG3, NAG4, and 19.5720 are strongly induced by NOR, while CDR2 and 19.304 are upregulated in the presence of AMB and CAS.”
    Quote in the paperNot a substantial claim
  • The quote only partly states this claim.

    Findingown data

    19.304 is induced by caspofungin after 4 h.

    “FLU1 is repressed in the presence of NOR, CAS, and FLU; CDR1 is induced by NOR; CDR2 is induced by NOR and AMB; and 19.304 by CAS.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingnone given

    The third category of nortriptyline-sensitive mutants includes 15 mutants, most of which are poorly characterized.

    “The third category includes 15 mutants, most of which are poorly characterized.”
    Quote in the paperNot a substantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingcitation

    Many of the targets are regulated by the transcription factor Hap43.

    “It is interesting to note that many of the targets are regulated by the transcription factor Hap43, a protein with pleiotropic functions (i.e., iron homeostasis, chromosome biogenesis, and filamentation [44]).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The growth phenotypes of the mutants separate them into three categories: sensitive to nortriptyline and other known antimicrobials in all conditions; sensitive when nortriptyline was added during the first stages of biofilm formation and to the mature biofilm; and sensitive to nortriptyline only during the first stages of biofilm formation.

    “The displayed GPs allow the separation of the mutants into three categories: the first one corresponds to mutants sensitive to NOR, as well as to other known antimicrobials and in all the growing conditions tested; the second one corresponds to mutants sensitive when NOR was added during the first stages of biofilm formation and to the mature biofilm; and the third corresponds to strains sensitive”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • The quote only partly states this claim.

    Findingown data

    CDR1 is induced by nortriptyline after 4 h.

    “FLU1 is repressed in the presence of NOR, CAS, and FLU; CDR1 is induced by NOR; CDR2 is induced by NOR and AMB; and 19.304 by CAS.”
    Quote in the paperNot a substantial claim
  • The quote only partly states this claim.

    Findingown data

    A total of 38 mutants were identified as sensitive to nortriptyline within a mature biofilm.

    “A total of 38 mutants were identified as sensitive to the TCA also within a mature biofilm.”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • The quote only partly states this claim.

    Findingown data

    44 strains grew better than the wild type when challenged with nortriptyline during biofilm formation.

    “As shown in Supplementary Table S4 and Figure 1b, 44 strains grew better than the WT when challenged with the TCA during biofilm formation.”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • The quote only partly states this claim.

    Findingown data

    The expression of CDR2 increased when amphotericin B or caspofungin is present in the medium after 24 h.

    “The expression of CDR1 is induced by AMB and FLU; the expression of CDR2 increased when AMB or CAS is present in the medium; and MDR1 is upregulated when AMB, CAS, and FLU are present.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    The 12 mutated genetic functions in tolerant mutants are poorly characterized, and the ones with known activity correspond to PLB1, SHA3, and SCH9.

    “These 12 mutated genetic functions are poorly characterized, and the ones with a known activity correspond to PLB1, a phospholipase B involved in virulence, and SHA3 and SCH9, involved in stress responses and in filamentous growth; among these, mutants’ tolerance to all four drugs was displayed by six strains (Figure 1d), where the deleted genes were PGA12, CPR52, RTS2, PAA11, orf19.305, and orf19”
    Quote in the paperNot a substantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • May combine two claims.

    Findingcitation

    In CAS treatment, glutathione oxidation state was lower, while ROS, NO, and PI+ cells were higher.

    “where the glutathione oxidation state was lower, while ROS, NO, and PI+ cells were higher”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingcitation

    The NOR tolerance phenotype is not linked to DNA damage, as DNA damage was observed only at drug concentrations higher than those used in this work and higher than those used to treat depression syndromes.

    “a phenotype not linked to DNA damage, as the latter was observed only at drug concentrations higher than those used in this work, and to that employed to treat depression syndromes [43].”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [43] Caldara, 2017, Off-target effects of neuroleptics and antidepressants on Saccharomyces cerevisiae, Toxicol. Sci.

      Not checked in the free run.

  • The quote only partly states this claim.

    Findingown data

    FLU1 is repressed by caspofungin, fluconazole, and nortriptyline after 24 h.

    “FLU1 is repressed by CAS, FLU, and NOR, while 19.304 is induced by the same antimicrobials.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingnone given

    Among the general sensitive mutants, most deleted ORFs are poorly characterized and their role is often only predicted.

    “Among those, most of the deleted open reading frames (ORFs) have been poorly characterized and the role attributed is often only predicted.”
    Quote in the paperNot a substantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • May combine two claims.

    Findingown data

    In a mature biofilm, expression of these transporters is almost absent and changes only slightly after 4 h of treatment with antimicrobials.

    “Overall, the expression of these transporters in a mature biofilm is almost absent and changes only slightly after 4 h of treatment with antimicrobials”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    After 24 h, all these genes are upregulated, but their expression is different between treatments.

    “instead, after 24 h, all genes are upregulated, but their expression is different between treatments.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    Nortriptyline inhibits biofilm and hyphae formation and efficiently kills cells in a mature C. albicans biofilm.

    “Nortriptyline, a tricyclic antidepressant, was shown to have the capacity to inhibit biofilm and hyphae formation, along with the ability to efficiently kill cells in a mature biofilm.”
    • Also stated in: § 1. Introduction · plain
      “Nortriptyline (NOR), the most used tricyclic antidepressants (TCA) up until the introduction of selective serotonin re-uptake inhibitors, or SSRIs, was shown to have the capacity to inhibit biofilm and hyphae formation and to efficiently kill cells in a mature biofilm of C. albicans [11].”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [11] Caldara, 2018, Tricyclic antidepressants inhibit Candida albicans growth and biofilm formation, Int. J. Antimicrob. Agents source

      Not checked in the free run.

  • The quote only partly states this claim.

    Interpretationcitation

    The effect of increased ROS and dead cells may have clinical relevance because oxidative stress reduces microbial pathogenicity by enhanced killing by macrophages.

    “Overall, this is an effect that may have clinical relevance because it is known that oxidative stress reduces microbial pathogenicity by enhanced killing by macrophages [35], as shown for A. fumigatus [36].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [35] Traven, 2011, Mitochondria and Fungal Pathogenesis: Drug Tolerance, Virulence, and Potential for Antifungal Therapy, Eukaryot. Cell source

      Not checked in the free run.

    • cites [36] Magnani, 2008, Silencing of mitochondrial alternative oxidase gene of Aspergillus fumigatus enhances reactive oxygen species production and killing of the fungus by macrophages, J. Bioenerg. Biomembr. source

      Not checked in the free run.

  • Classified as probably not a substantial claim.

    Premisecitation

    Oxidative stress induces cell damage and cell death.

    “Oxidative stress has been suggested to induce cell damage and cell death [34]”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [34] Peralta, 2017, Usnic Acid Activity on Oxidative and Nitrosative Stress of Azole-Resistant Candida albicans Biofilm, Planta Med.

      Not checked in the free run.

  • May combine two claims.

    Premisecitation

    CAS induces ROS and cell death.

    “confirming previous data showing the capacity of CAS to induce ROS and cell death [37].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [37] Chi, 2014, Deletion of AIF1 but not of YCA1/MCA1 protects Saccharomyces cerevisiae and Candida albicans cells from caspofungin-induced programmed cell death, Microb. Cell

      Not checked in the free run.

  • May combine two claims.

    Interpretationreasoning

    Data suggest that mutants in mismatch and DNA repair better tolerate treatment with nortriptyline, suggesting that treatment with nortriptyline is related to DNA damage.

    “Data reported in the previous paragraphs suggest that mutants in mismatch and DNA repair better tolerate a treatment with NOR, suggesting that treatment with the TCA is related to DNA damage.”
    Quote in the paperSubstantial claim
    • The authors state this as an assumption: A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    In higher organisms, NO is involved in cell signaling and maintenance of homeostasis, but high levels of this metabolite lead to chemical stress.

    “In higher organisms, NO is involved in cell signaling and maintenance of homeostasis, but high levels of this metabolite lead to chemical stress, possibly also contributing to the induction and progression of diseases [38,39].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [38] Datta, 2014, Correlation of oxidant status with oxidative tissue damage in patients with rheumatoid arthritis, Clin. Rheumatol. source

      Not checked in the free run.

    • cites [39] Cheng, 2017, Inducible Nitric Oxide Synthase in the Carcinogenesis of Gastrointestinal Cancers, Antioxid. Redox Signal. source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Expression of the ATP binding cassette transporters MDR1, CDR1, and CDR2 is often higher in resistant clinical isolates.

    “Indeed, expression of these ATP binding cassette transporters (ABC) is often higher in resistant clinical isolates [46,48].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [46] Arendrup, 2017, Multidrug-resistant candida: Epidemiology, molecular mechanisms, and treatment, J. Infect. Dis. source

      Not checked in the free run.

    • cites [48] Barker, 2006, Recent insights into the mechanisms of antifungal resistance, Curr. Infect. Dis. Rep. source

      Not checked in the free run.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Study design and conductreasoning

    In this study, gene function is often reported as putative, predicted, or inferred based on known orthologues from Saccharomyces cerevisiae.

    “Several Candida albicans genes still need to be characterized, and this is also reflected in this study as gene function is often reported as putative, predicted, or inferred (based on known orthologues from Saccharomyces cerevisiae).”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationreasoning

    The detox-response in Candida albicans to this TCA is specific and different from the response to other antifungals.

    “This shows how the detox-response in Candida albicans to this TCA is specific and different from the response to other antifungals.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Interpretationreasoning

    NOR could be repositioned as a new antimicrobial drug ready to be tested on in vivo models to investigate its potential clinical application.

    “These data suggest NOR could be repositioned as a “new” antimicrobial drug ready to be tested on in vivo models to investigate its potential clinical application.”
    Quote in the paperSubstantial claim
27 of 27
  • The authors state this as an assumption.

    A heterozygous deletion strain is particularly sensitive to a drug when the product of the deleted gene is the target of the drug being tested.

    “This procedure is based on the assumption that a heterozygous deletion strain would be particularly sensitive to the presence of a drug whenever the product of the deleted gene is the target of the molecule being tested.”
  • The paper relies on this without support.

    In vitro activity and target identification of nortriptyline against C. albicans biofilms predict its potential efficacy in in vivo infection models.

    “The data presented suggest that nortriptyline can be considered a “new” antimicrobial drug with large potential for application to in vivo infection models.”
  • The paper relies on this without support.

    Little is known about NOR's potential target(s) and molecular effects in Candida albicans.

    “but little is known about its potential target(s) and molecular effects.”
3 of 3

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Chemogenomic profiling with a haploinsufficiency approach focused on C. albicans mutants identified oxidative phosphorylation, fatty acid metabolism, ribosome biogenesis and machinery, RNA binding, and RNA splicing apparatus as possible targets of nortriptyline.

    “Chemogenomic profiling with a haploinsufficiency approach focused on C. albicans mutants identified the following processes and systems as possible targets of nortriptyline: oxidative phosphorylation, fatty acid metabolism, ribosome biogenesis and machinery, RNA binding, and the RNA splicing apparatus [73,106].”
  • Treatment of a C. albicans mutants library with nortriptyline identified mutants specifically sensitive or tolerant to this drug and others sharing phenotype when treated with common antifungals.

    “Indeed, treatment of a C. albicans mutants library with nortriptyline identified mutants that are specifically sensitive or tolerant to this drug and others that share the same phenotype when treated with common antifungals [73].”
  • TCAs are active against Candida spp., where they inhibit hyphal formation, lyse cells, and kill them even in a mature biofilm.

    “Works based on TCAs showed that this class of molecules was active against Candida spp., where they inhibited hyphal formation, lysed the cells, and killed them even in a mature biofilm [72,73].”
  • Mitochondria are one of the targets of nortriptyline.

    “The work suggests that mitochondria are one of the targets of nortriptyline (Figure 1), although it is not clear which function, carried out by this organelle (i.e., ATP production and oxidative phosphorylation, maintenance of the redox state, cell survival or apoptosis induction, lipid peroxidation), is affected.”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Sensitive and tolerant criteria overlap

    Minor

    A mutant growing at least three times as much as the WT meets the stated criterion for tolerance, but it also meets the stated criterion for sensitivity: growth of at least one-third of the WT. The criteria therefore cannot distinguish the two reported groups.

  • FLU1 repression conflicts with claim that all genes were upregulated

    Minor

    The discussion states that all examined transporter genes were upregulated after 24 hours, whereas the results report that FLU1 was repressed by three of the drugs at that time.

2 of 2

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Authors
Caldara, M., & Marmiroli, N.
Affiliations
University of Parma (IT)
Corresponding author
Caldara, Marina
Venue
Microorganisms
Publisher
MDPI AG
Published
2020-05-15
Volume
8
Issue
5
Pages
742
ISSN
2076-2607 (ISSN-L)
OpenAlex
W3024401325
Cited by
8
References
48
Citations by year
2025: 1 · 2024: 1 · 2022: 1 · 2021: 4 · 2018: 1
FWCI
0.16
Type
journal article
Language
en
Open access
Locations
  • Microorganisms (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
Università degli Studi di Parma (CALD.INCENTIFIL17)
Topics
  • Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
  • Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Fungal Plant Pathogen Control
Keywords
nortriptyline, Candida albicans, drug repurposing, antifungal resistance, biofilm formation, ribosome biogenesis, spliceosome, oxidative stress response, stress response, amphotericin B, caspofungin, fluconazole, tricyclic antidepressants

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