Revisiting the Taxonomic Synonyms and Populations of Saccharomyces cerevisiae-Phylogeny, Phenotypes, Ecology and Domestication
Open accessAbstract
Saccharomyces cerevisiae—the most emblematic and industrially relevant yeast—has a long list of taxonomical synonyms. Formerly considered as distinct species, some of the synonyms represent variants with important industrial implications, like Saccharomyces boulardii or Saccharomyces diastaticus, but with an unclear status, especially among the fermentation industry, the biotechnology community and biologists not informed on taxonomic matters. Here, we use genomics to investigate a group of 45 reference strains (type strains) of former Saccharomyces species that are currently regarded as conspecific with S. cerevisiae. We show that these variants are distributed across the phylogenetic spectrum of domesticated lineages of S. cerevisiae, with emphasis on the most relevant technological groups, but absent in wild lineages. We analyzed the phylogeny of a representative and well-balanced dataset of S. cerevisiae genomes that deepened our current ecological and biogeographic assessment of wild populations and allowed the distinction, among wild populations, of those associated with low- or high-sugar natural environments. Some wild lineages from China were merged with wild lineages from other regions in Asia and in the New World, thus giving more resolution to the current model of expansion from Asia to the rest of the world. We reassessed several key domestication markers among the different domesticated populations. In some cases, we could trace their origin to wild reservoirs, while in other cases gene inactivation associated with domestication was also found in wild populations, thus suggesting that natural adaptation to sugar-rich environments predated domestication.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Strains from other alcoholic beverages (e.g., spirits) were less clustered, in agreement with previous studies.
“Strains from other alcoholic beverages (e.g., spirits) were less clustered, in agreement with previous studies. 115,121”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [121]
Results §3.2 reports that the former type strains isolated from wine joined two wine clades, while §§3.2 and 3.4 place strains from other fermented beverages in several clades. This supports a limited comparison for the strains examined, but the paper does not establish that spirits strains, or strains from other alcoholic beverages generally, were less clustered. (LLM, conf=0.72)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Kumar, S., Stecher, G., & Tamura, K. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw054 · Cited by 43,923 · see citing works
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Nguyen, L.-T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msu300 · Cited by 26,046 · see citing works
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Hoang, D. T., Chernomor, O., von Haeseler, A., Minh, B. Q., & Vinh, L. S. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msx281 · Cited by 10,881 · see citing works
Letunic, I., & Bork, P. (2016) · Nucleic Acids Res. · doi:10.1093/nar/gkw290 · Cited by 4,851 · see citing works
Population genomics of domestic and wild yeasts
Liti, G., Carter, D. M., Moses, A. M., Warringer, J., Parts, L., James, S. A., Davey, R., Roberts, I. N., Burt, A., Koufopanou, V., et al. (2008) · Nature · doi:10.1038/nature07743 · Cited by 1,391 · see citing works
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., et al. (2018) · Nature · doi:10.1038/s41586-018-0030-5 · Cited by 1,117 · see citing works
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
Gallone, B., Steensels, J., Prahl, T., Soriaga, L., Saels, V., Herrera-Malaver, B., Merlevede, A., Roncoroni, M., Voordeckers, K., Miraglia, L., et al. (2016) · Cell · doi:10.1016/j.cell.2016.08.020 · Cited by 679 · see citing works
Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
Legras, J., Merdinoglu, D., Cornuet, J., & Karst, F. (2007) · Molecular Ecology · doi:10.1111/j.1365-294x.2007.03266.x · Cited by 550 · see citing works
How did Saccharomyces evolve to become a good brewer?
Piškur, J., Rozpędowska, E., Poláková, S., Merico, A., & Compagno, C. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.02.002 · Cited by 514 · see citing works
Evidence for Domesticated and Wild Populations of Saccharomyces cerevisiae
Fay, J. C., & Benavides, J. A. (2005) · PLoS Genetics · doi:10.1371/journal.pgen.0010005 · Cited by 447 · see citing works
Novo, M., Bigey, F., Beyne, E., Galéote, V., Gavory, F., Mallet, S., Cambon, B., Legras, J., Wincker, P., Casarégola, S., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0904673106 · Cited by 420 · see citing works
Trait Variation in Yeast Is Defined by Population History
Warringer, J., Zörgö, E., Cubillos, F. A., Zia, A., Gjuvsland, A. B., Simpson, J. T., Forsmark, A., Durbin, R. M., Omholt, S. W., Louis, E. J., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002111 · Cited by 338 · see citing works
Strope, P. K., Skelly, D. A., Kozmin, S. G., Mahadevan, G., Stone, E. A., Magwene, P. M., Dietrich, F. S., & McCusker, J. H. (2015) · Genome Research · doi:10.1101/gr.185538.114 · Cited by 337 · see citing works
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
Yue, J., Li, J., Aigrain, L., Hallin, J., Persson, K. O., Oliver, K. L., Bergström, A., Coupland, P. G., Warringer, J., Lagomarsino, M. C., et al. (2017) · Nature Genetics · doi:10.1038/ng.3847 · Cited by 332 · see citing works
Sampaio, J. P., & Gonçalves, P. M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02396-07 · Cited by 301 · see citing works
Self-citationScannell, D. R., Zill, O. A., Rokas, A., Payen, C., Dunham, M. J., Eisen, M. B., Rine, J., Johnston, M., & Hittinger, C. T. (2011) · G3 Genes Genomes Genetics · doi:10.1534/g3.111.000273 · Cited by 296 · see citing works
Nijkamp, J. F., van den Broek, M. A., Datema, E., de Kok, S., Bosman, L., Luttik, M. A. H., Daran-Lapujade, P. A. S., Vongsangnak, W., Nielsen, J., Heijne, W. H. M., et al. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-36 · Cited by 285 · see citing works
Wang, Q., Liu, W., Liti, G., Wang, S., & Bai, F. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05732.x · Cited by 272 · see citing works
A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes
Bergström, A., Simpson, J. T., Salinas, F., Barré, B. P., Parts, L., Zia, A., Ba, A. N. N., Moses, A. M., Louis, E. J., Mustonen, V., et al. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu037 · Cited by 268 · see citing works
The origin and adaptive evolution of domesticated populations of yeast from Far East Asia
Duan, S.-F., Han, P.-J., Wang, Q.-M., Liu, W.-Q., Shi, J.-Y., Li, K., Zhang, X.-L., & Bai, F.-Y. (2018) · Nature Communications · doi:10.1038/s41467-018-05106-7 · Cited by 244 · see citing works
Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts
Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R. G., Serra, M. L., Libkind, D., Hutzler, M., Gonçalves, P. M., & Sampaio, J. P. (2016) · Current Biology · doi:10.1016/j.cub.2016.08.040 · Cited by 224 · see citing works
Self-citationLegras, J., Galéote, V., Bigey, F., Camarasa, C., Marsit, S., Nidelet, T., Sanchez, I., Couloux, A., Guy, J., Franco‐Duarte, R., et al. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy066 · Cited by 216 · see citing works
Self-citationAlmeida, P., Gonçalves, C., Teixeira, S., Libkind, D., Bontrager, M., Masneuf‐Pomarède, I., Albertin, W., Durrens, P., Sherman, D. J., Marullo, P., et al. (2014) · Nature Communications · doi:10.1038/ncomms5044 · Cited by 204 · see citing works
Self-citationChronic intake of fermented floral nectar by wild treeshrews
Wiens, F., Zitzmann, A., Lachance, M., Yegles, M., Pragst, F., Wurst, F. M., von Holst, D., Saw, L. G., & Spanagel, R. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801628105 · Cited by 202 · see citing works
A population genomics insight into the Mediterranean origins of wine yeast domestication
Almeida, P., Barbosa, R. G., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J., Serra, M. L., Dequin, S., Couloux, A., et al. (2015) · Molecular Ecology · doi:10.1111/mec.13341 · Cited by 174 · see citing works
Self-citationHall, C., & Dietrich, F. S. (2007) · Genetics · doi:10.1534/genetics.107.074963 · Cited by 158 · see citing works
Borneman, A. R., Forgan, A. H., Kolouchova, R., Fraser, J. A., & Schmidt, S. A. (2016) · G3 Genes Genomes Genetics · doi:10.1534/g3.115.025692 · Cited by 135 · see citing works
Genomic Sequence Diversity and Population Structure of Saccharomyces cerevisiae Assessed by RAD-seq
Cromie, G. A., Hyma, K. E., Ludlow, C. L., Garmendia‐Torres, C., Gilbert, T., May, P., Huang, A. A., Dudley, A. M., & Fay, J. C. (2013) · G3 Genes Genomes Genetics · doi:10.1534/g3.113.007492 · Cited by 134 · see citing works
Torresi, S., Frangipane, M. T., & Anelli, G. (2011) · Food Chemistry · doi:10.1016/j.foodchem.2011.05.006 · Cited by 118 · see citing works
Stelling-Dekker, N. M. (1931) · Utrecht University Repository (Utrecht University) · Cited by 109 · see citing works
Genomic Insights into the Saccharomyces sensu stricto Complex
Borneman, A. R., & Pretorius, I. S. (2015) · Genetics · doi:10.1534/genetics.114.173633 · Cited by 101 · see citing works
Saccharomyces boulardiieffects on gastrointestinal diseases
Zanello, G., Meurens, F., Berri, M., & Salmon, H. (2009) · Current Issues in Molecular Biology · doi:10.21775/cimb.011.047 · Cited by 100 · see citing works
Will, J., Kim, H. S., Clarke, J., Painter, J. C., Fay, J. C., & Gasch, A. P. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1000893 · Cited by 99 · see citing works
Angebault, C., Djossou, F., Abélanet, S., Permal, E., Soltana, M. B., Diancourt, L., Bouchier, C., Woerther, P., Catzeflis, F. M., Andremont, A., et al. (2013) · The Journal of Infectious Diseases · doi:10.1093/infdis/jit389 · Cited by 99 · see citing works
RTM1: a member of a new family of telomeric repeated genes in yeast.
Ness, F., & Aigle, M. (1995) · Genetics · doi:10.1093/genetics/140.3.945 · Cited by 97 · see citing works
SUPER-ATTENUATION OF BEER: A STUDY OF THREE ORGANISMS CAPABLE OF CAUSING ABNORMAL ATTENUATIONS
Andrews, B. J., & Gilliland, R. B. (1952) · Journal of the Institute of Brewing · doi:10.1002/j.2050-0416.1952.tb02675.x · Cited by 85 · see citing works
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
Liti, G., Ba, A. N. N., Blythe, M., Müller, C. A., Bergström, A., Cubillos, F. A., Dafhnis-Calas, F., Khoshraftar, S., Malla, S., Mehta, N., et al. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-69 · Cited by 83 · see citing works
A polyploid admixed origin of beer yeasts derived from European and Asian wine populations
Fay, J. C., Liu, P., Ong, G. T., Dunham, M. J., Cromie, G. A., Jeffery, E. W., Ludlow, C. L., & Dudley, A. M. (2019) · PLoS Biology · doi:10.1371/journal.pbio.3000147 · Cited by 81 · see citing works
Summer temperature can predict the distribution of wild yeast populations
Robinson, H. A., Pinharanda, A., & Bensasson, D. (2016) · Ecology and Evolution · doi:10.1002/ece3.1919 · Cited by 78 · see citing works
Yeasts in Natural Ecosystems: Ecology
Yurkov, A. M., Lachance, M., & Buzzini, P. (2017) · Springer eBooks · doi:10.1007/978-3-319-61575-2 · Cited by 77 · see citing works
Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae
Barbosa, R. G., Almeida, P., Safar, S. V. B., Santos, R. O., Morais, P. B., Nielly‐Thibault, L., Leducq, J., Landry, C. R., Gonçalves, P. M., Rosa, C. A., et al. (2016) · Genome Biology and Evolution · doi:10.1093/gbe/evv263 · Cited by 74 · see citing works
Self-citationEvolutionary biology through the lens of budding yeast comparative genomics
Marsit, S., Leducq, J., Durand, É., Marchant, A., Filteau, M., & Landry, C. R. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.49 · Cited by 72 · see citing works
Meier‐Dörnberg, T., Kory, O. I., Jacob, F., Michel, M., & Hutzler, M. (2018) · FEMS Yeast Research · doi:10.1093/femsyr/foy023 · Cited by 52 · see citing works
Self-citationLegras, J., Erny, C., & Charpentier, C. (2014) · PLoS ONE · doi:10.1371/journal.pone.0108089 · Cited by 49 · see citing works
A new family of polymorphic genes in Saccharomyces cerevisiae: α-galactosidase genes MEL1-MEL7
Naumov, G. I., Turakainen, H., Naumova, E. S., Aho, S., & Korhola, M. (1990) · Molecular and General Genetics MGG · doi:10.1007/bf00259458 · Cited by 48 · see citing works
Meyen, F. J. F. (1836) · Biodiversity Heritage Library (Smithsonian Institution) · doi:10.5281/zenodo.16053338 · Cited by 47 · see citing works
Pontes, A., Čadež, N., Gonçalves, P. M., & Sampaio, J. P. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00449 · Cited by 45 · see citing works
Self-citationKrogerus, K., Magalhães, F., Kuivanen, J., & Gibson, B. R. (2019) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-019-10021-y · Cited by 43 · see citing works
Barbosa, R. G., Pontes, A., Santos, R. O., Montandon, G. G., Ponzzes-Gomes, C. M. P. B. S., Morais, P. B., Gonçalves, P. M., Rosa, C. A., & Sampaio, J. P. (2018) · Genome Biology and Evolution · doi:10.1093/gbe/evy132 · Cited by 41 · see citing works
Self-citationMEL gene polymorphism in the genus Saccharomyces
Turakainen, H., Aho, S., & Korhola, M. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.8.2622-2630.1993 · Cited by 38 · see citing works
Naumov, G. I., Naumova, E. S., Turakainen, H., Suominen, P. L., & Korhola, M. (1991) · Current Genetics · doi:10.1007/bf00318514 · Cited by 36 · see citing works
Biogeography and Ecology of the Genus Saccharomyces
Sampaio, J. P., & Gonçalves, P. M. (2017) · Springer eBooks · doi:10.1007/978-3-319-61575-2_5 · Cited by 17 · see citing works
Self-citationYeast Comparative Genetics: A New MEL15 α-Galactosidase Gene of Saccharomyces cerevisiae
Naumov, G. I., Naumova, E. S., Korshunova, I. V., & Jakobsen, M. (2002) · Russian Journal of Genetics · doi:10.1023/a:1020640418358 · Cited by 15 · see citing works
Molecular Analysis of the α-Galactosidase MEL Genes in Yeast Saccharomyces sensu stricto
Naumova, E. S., Korshunova, I. V., & Naumov, G. I. (2003) · Molecular Biology · doi:10.1023/a:1026032926357 · Cited by 14 · see citing works
SACCHAROMYCES DIASTATICUS-A STARCH-FERMENTING YEAST
Gilliland, R. B. (1966) · Journal of the Institute of Brewing · doi:10.1002/j.2050-0416.1966.tb02964.x · Cited by 13 · see citing works
[Molecular analysis of alpha-galactosidase MEL genes from Saccharomyces sensu stricto].
Es, N., Korshunova, & Naumov, G. I. (2003) · PubMed · Cited by 8 · see citing works
Molecular polymorphism of α-galactosidase MEL genes of Saccharomyces yeasts
Naumova, E. S., Serpova, E. V., Korshunova, I. V., & Naumov, G. I. (2011) · Microbiology · doi:10.1134/s0026261711040151 · Cited by 8 · see citing works
Saccharomyces vafer andS. inconspicuus spp.n.
van der Walt, J. P. (1965) · Antonie van Leeuwenhoek · doi:10.1007/bf02045890 · Cited by 8 · see citing works
Flagged first, then by citations
2 of the 61 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
- [5]Yarrow D. Saccharomyces Meyen ex Reess The Yeasts, A Taxonomic Study Kreger van Rig N. Elsevier Amsterdam, The Netherlands 1984 379 395
Cited by
Sorted by citations
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino, N., Blanco-Míguez, A., Punčochář, M., Mengoni, C., Pinto, F., Tatti, A., Manghi, P., Armanini, F., Avagliano, M., Barcenilla, C., et al. (2024) · Cell · doi:10.1016/j.cell.2024.07.039 · Cited by 146 · see citing works
Wild Yeast for the Future: Exploring the Use of Wild Strains for Wine and Beer Fermentation
Molinet, J., & Cubillos, F. A. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.589350 · Cited by 66 · see citing works
Maixner, F., Sarhan, M. S., Huang, K. D., Tett, A., Schoenafinger, A., Zingale, S., Blanco-Míguez, A., Manghi, P., Cemper-Kiesslich, J., Rosendahl, W., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.09.031 · Cited by 62 · see citing works
The Ecology and Evolution of the Baker’s Yeast Saccharomyces cerevisiae
Bai, F., Han, D., Duan, S.-F., & Wang, Q. (2022) · Genes · doi:10.3390/genes13020230 · Cited by 60 · see citing works
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces
Peris, D., Ubbelohde, E. J., Kuang, M. C., Kominek, J., Langdon, Q. K., Adams, M., Koshalek, J. A., Hulfachor, A. B., Opulente, D. A., Hall, D. J., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36139-2 · Cited by 61 · see citing works
Self-citationYang, Y., Fan, L., Peng, Y., Peng, C., & Li, X. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.07.220 · Cited by 56 · see citing works
Han, D., Han, P., Rumbold, K., Dabassa, A., Duan, S., Song, L., Shi, J., Li, K., Wang, Q., & Bai, F. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.631250 · Cited by 39 · see citing works
Toward a Global Ecology of Fermented Foods
Dunn, R. R., Wilson, J. B., Nichols, L. M., & Gavin, M. C. (2021) · Current Anthropology · doi:10.1086/716014 · Cited by 36 · see citing works
Hutzler, M., Michel, M., Kunz, O., Kuusisto, T., Magalhães, F., Krogerus, K., & Gibson, B. R. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.645271 · Cited by 35 · see citing works
Self-citationJacobus, A. P., Stephens, T. G., Youssef, P., González‐Pech, R. A., Ciccotosto-Camp, M., Dougan, K. E., Chen, Y., Basso, L. C., Jeverson Frazzon, B., Chan, C. X., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.644089 · Cited by 33 · see citing works
A Theory of City Biogeography and the Origin of Urban Species
Dunn, R. R., Burger, J. R., Carlen, E. J., Koltz, A. M., Light, J. E., Martin, R. A., Munshi‐South, J., Nichols, L. M., Vargo, E. L., Yitbarek, S., et al. (2022) · Frontiers in Conservation Science · doi:10.3389/fcosc.2022.761449 · Cited by 28 · see citing works
Carrau, F., Dellacassa, E. S., Boido, E., Medina, K., Valera, M. J., Fariña, L., Perez, G., Martín, V., Álvarez-Valín, F., & Balestrazzi, L. (2023) · FEMS Yeast Research · doi:10.1093/femsyr/foad010 · Cited by 26 · see citing works
Sugar‐seeking insects as a source of diverse bread‐making yeasts with enhanced attributes
Madden, A. A., Lahue, C., Gordy, C. L., Little, J. L., Nichols, L. M., Calvert, M. D., Dunn, R. R., & Heil, C. S. (2021) · Yeast · doi:10.1002/yea.3676 · Cited by 24 · see citing works
Crequer, E., Ropars, J., Jany, J., Caron, T., Coton, M., Snirc, A., Vernadet, J., Branca, A., Giraud, T., & Coton, E. (2023) · Evolutionary Applications · doi:10.1111/eva.13578 · Cited by 25 · see citing works
Contrasting strategies for sucrose utilization in a floral yeast clade
Gonçalves, C., Marques, M., & Gonçalves, P. (2022) · mSphere · doi:10.1128/msphere.00035-22 · Cited by 23 · see citing works
Ruíz, J., de Celis, M., Martín‐Santamaría, M., Benito‐Vázquez, I., Pontes, A., Lanza, V. F., Sampaio, J. P., Santos, A., & Belda, I. (2021) · Environmental Microbiology · doi:10.1111/1462-2920.15540 · Cited by 22 · see citing works
Self-citationGenomic Adaptations of Saccharomyces Genus to Wine Niche
García‐Ríos, E., & Guillamón, J. M. (2022) · Microorganisms · doi:10.3390/microorganisms10091811 · Cited by 19 · see citing works
Marr, R. A., Moore, J., Formby, S., Martiniuk, J. T., Hamilton, J., Ralli, S., Konwar, K. M., Rajasundaram, N., Hahn, A. S., & Measday, V. (2023) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkad130 · Cited by 19 · see citing works
European farmhouse brewing yeasts form a distinct genetic group
Preiss, R., Fletcher, E., Garshol, L. M., Foster, B., Özşahin, E., Lubberts, M., van der Merwe, G. K., & Krogerus, K. (2024) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-024-13267-3 · Cited by 15 · see citing works
Sampaio, J. P., & Pontes, A. (2025) · Current Biology · doi:10.1016/j.cub.2025.04.056 · Cited by 13 · see citing works
Self-citationThriving in Adversity: Yeasts in the Agave Fermentation Environment
Colón‐González, M., Dugua, X. A., Guerrero‐Osornio, M. G., Avelar‐Rivas, J. A., DeLuna, A., Mancera, E., & Morales, L. (2025) · Yeast · doi:10.1002/yea.3989 · Cited by 12 · see citing works
Progressive coevolution of the yeast centromere and kinetochore
Helsen, J., Ramachandran, K., Sherlock, G. J., & Dey, G. (2025) · Nature · doi:10.1038/s41586-025-09779-1 · Cited by 12 · see citing works
Romano, P., Siesto, G., Capece, A., Pietrafesa, R., Lanciotti, R., Patrignani, F., Granchi, L., Galli, V., Bevilacqua, A., Campaniello, D., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.830277 · Cited by 12 · see citing works
Ward, C. M., Onetto, C. A., Heuvel, S. V. D., Cuijvers, K. M., Hale, L. J., & Borneman, A. R. (2024) · PLoS Genetics · doi:10.1371/journal.pgen.1011223 · Cited by 11 · see citing works
Membraneless physiology of the living cell. The past and the present
Matveev, V. V. (2022) · 4open · doi:10.1051/fopen/2022013 · Cited by 11 · see citing works
Díaz-Muñoz, C., Verce, M., De Vuyst, L., & Weckx, S. (2022) · iScience · doi:10.1016/j.isci.2022.105309 · Cited by 10 · see citing works
Lalanne, C., & Silar, P. (2025) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2025.103969 · Cited by 9 · see citing works
Avelar‐Rivas, J. A., Sedeño, I., García-Ortega, L. F., Aragon, J. A. U., López-Gallegos, C., Dugua, X. A., Mancera, E., DeLuna, A., & Morales, L. (2026) · Nature Communications · doi:10.1038/s41467-026-69138-0 · Cited by 9 · see citing works
Paraíso, F., Pontes, A., Neves, J., Lebani, K., Hutzler, M., Zhou, N., & Sampaio, J. P. (2023) · Food Microbiology · doi:10.1016/j.fm.2023.104320 · Cited by 8 · see citing works
Self-citationPontes, A., Paraíso, F., Liu, Y., Limtong, S., Jindamorakot, S., Jespersen, L., Gonçalves, C., Rosa, C. A., Tsai, I. J., Rokas, A., et al. (2024) · iScience · doi:10.1016/j.isci.2024.108987 · Cited by 8 · see citing works
Self-citationRácz, H. V., Mukhtar, F., Imre, A., Rádai, Z., Gombert, A. K., Rátonyi, T., Nagy, J., Pócsi, I., & Pfliegler, W. P. (2021) · Yeast · doi:10.1002/yea.3562 · Cited by 8 · see citing works
Sugar Utilization-Associated Food-Grade Selection Markers in Lactic Acid Bacteria and Yeast
Liang, Z., Zheng, K., Xie, G., Luo, X., & Li, H. (2024) · Polish Journal of Microbiology · doi:10.33073/pjm-2024-011 · Cited by 7 · see citing works
Footprints of Human Migration in the Population Structure of Wild Baker's Yeast
Peña, J. J., da Costa, E. S. F., Ward, A. K., & Bensasson, D. (2025) · Molecular Ecology · doi:10.1111/mec.17669 · Cited by 5 · see citing works
The teenage years of yeast population genomics — trace history, admixing and getting wilder
Tsai, I. J. (2022) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2022.101942 · Cited by 5 · see citing works
Contreras, Á., Villalobos-Cid, M., Valdés, C., Villarroel, C. A., Castro, F., Farías, I., & Lorca, G. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1599904 · Cited by 3 · see citing works
Field-isolated brewing yeast produces wheat beer flavor without wheat ingredients
Shen, X., Chen, I., Chen, W.-H., Hsu, Y.-C., & Tsai, C. (2024) · LWT · doi:10.1016/j.lwt.2024.116088 · Cited by 3 · see citing works
Rácz, H. V., Imre, A., Németh, B., Antunovics, Z., Bazenova, R., Bendixsen, D. P., Harmath, A., Herman, L., Fulep, A., Lopandić, K., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.02.07.637159 · Cited by 3 · see citing works
Animals, Plants and Afterimages: The Art and Science of Representing Extinction
Bienvenue, V., & Chare, N. (2022) · Berghahn Books · doi:10.3167/9781800734258 · Cited by 2 · see citing works
A First Draught: Pitfalls and Potentials in the Archaeological Chemistry of Beer
Driscoll, J. M., & Damm, J. C. (2023) · ACS symposium series · doi:10.1021/bk-2023-1446.ch002 · Cited by 2 · see citing works
Dominance of non-Saccharomyces yeasts in artisanal mezcal fermentations
Quezada, R., Kirchmayr, M. R., Arellano‐Plaza, M., Morales, J. A., Morrissey, J. P., & Gschaedler, A. (2025) · Microbiology · doi:10.1099/mic.0.001584 · Cited by 1 · see citing works
Horizontal gene transfer in Saccharomyces cerevisiae and other Saccharomycotina yeasts: a review
Grassi, A., Rogo, U., Fambrini, M., Pugliesi, C., & Agnolucci, M. (2026) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-026-05118-2 · Cited by 1 · see citing works
Footprints of human migration in the population structure of wild wine yeastPreprint
Peña, J. J., da Costa, E. S. F., Ward, A. K., & Bensasson, D. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.08.607167 · Cited by 1 · see citing works
A new skeletal model for the ankle joint complex
Silva, M. I. S. R., Marques, F., da Silva, M. T., & Flores, P. (2023) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) · doi:10.1111/mec.16428
Self-citationWard, C. M., Onetto, C. A., Heuvel, S. V. D., Cuijvers, K. M., Hale, L. J., & Borneman, A. R. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.06.07.544145
Saccharomyces Cerevisiae as a human pathogen in renal transplant recipients
Jabbar, F., Al-Attraqchi, A. A., & Nabeal, D. (2023) · AIP conference proceedings · doi:10.1063/5.0150564
Seanapati, S., & Saikia, D. (2023) · International Journal of Biosciences (IJB) · doi:10.12692/ijb/22.4.126-131
Chapter 14. Sweetness, Power, Yeasts and Entomo-terroir
Dunn, R. R., Sanchez, M. C., & Booker, M. (2022) · Berghahn Books · doi:10.1515/9781805390671-017
Applications of diastatic Saccharomyces cerevisiae in brewing, distilling and biofuel production
Nemenyi, J. L., Cárdenas-Pinto, S., Martin-Ryals, A. D., Boz, Z., Budner, D. M., MacIntosh, A. J., Zhang, B., & Thompson‐Witrick, K. A. (2024) · Journal of the Institute of Brewing · doi:10.58430/jib.v130i1.42
Wasp intestinal cues drive yeast toward outbreeding strategies
Abbà, S., Adair, L. D., Barbero, F., Casacci, L. P., Dukovski, I., Font-Verdera, F., Hawtrey, T. J., New, E. J., Nootem, J., Patawanich, P., et al. (2025) · The ISME Journal · doi:10.1093/ismejo/wraf243
Insights from sourdough redefine the domestication landscape of baker’s yeastPreprint
Ruffieux, M., Brandt, N. J., Gutierrez, A., Wolfe, B. E., Dunn, R. R., & Heil, C. S. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.29.721752
Rojas, D. M. R., Bruzone, M. C., Trochine, A., Libkind, D., & Burini, J. A. (2026) · European Food Research and Technology · doi:10.1007/s00217-026-05144-2
Dugua, X. A., Moreno-Hernández, J. M., López-Gallegos, C., Avelar‐Rivas, J. A., DeLuna, A., Morales, L., & Mancera, E. (2026) · Springer eBooks · doi:10.1007/978-3-031-64203-6_65-1
- Authors
- Pontes, A., Hutzler, M., Brito, P. H., & Sampaio, J. P.
- Affiliations
- Universidade Nova de Lisboa (PT)
- Technical University of Munich (DE)
- Corresponding author
- Sampaio, José Paulo
- Venue
- Microorganisms
- Publisher
- MDPI AG
- Published
- 2020-06-15
- Volume
- 8
- Issue
- 6
- Pages
- 903
- ISSN
- 2076-2607 (ISSN-L)
- PMC
- PMC7356373
- OpenAlex
- W3035671001
- Cited by
- 54
- References
- 61
- Citations by year
- 2026: 5 · 2025: 9 · 2024: 9 · 2023: 10 · 2022: 12 · 2021: 8 · 2020: 1
- FWCI
- 2.51
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- Microorganisms (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) (submittedVersion, other-oa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Fundação para a Ciencia e a Tecnologia (0993678)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Yeasts and Rust Fungi Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Keywords
- Saccharomyces cerevisiae, taxonomic synonymy, Saccharomyces boulardii, Saccharomyces diastaticus, yeast phylogeny, domestication, biogeography, gene inactivation, reference strains
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
