Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
Open accessAbstract
century AD) to in-depth microscopic, metagenomic, and proteomic analyses. The paleofeces were preserved in the underground salt mines of the UNESCO World Heritage site of Hallstatt in Austria. This allowed us to reconstruct the diet of the former population and gain insights into their ancient gut microbiome composition. Our dietary survey identified bran and glumes of different cereals as some of the most prevalent plant fragments. This highly fibrous, carbohydrate-rich diet was supplemented with proteins from broad beans and occasionally with fruits, nuts, or animal food products. Due to these traditional dietary habits, all ancient miners up to the Baroque period have gut microbiome structures akin to modern non-Westernized individuals whose diets are also mainly composed of unprocessed foods and fresh fruits and vegetables. This may indicate a shift in the gut community composition of modern Westernized populations due to quite recent dietary and lifestyle changes. When we extended our microbial survey to fungi present in the paleofeces, in one of the Iron Age samples, we observed a high abundance of Penicillium roqueforti and Saccharomyces cerevisiae DNA. Genome-wide analysis indicates that both fungi were involved in food fermentation and provides the first molecular evidence for blue cheese and beer consumption in Iron Age Europe.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Strains from other alcoholic beverages (e.g., spirits) were less clustered, in agreement with previous studies.
“Strains from other alcoholic beverages (e.g., spirits) were less clustered, in agreement with previous studies. 115,121”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [115]
The Results (Molecular evidence for blue cheese and beer consumption during the Iron Age; page unavailable) place spirit strains in a mixed clade alongside bread, wine, and beer strains, supporting the example of spirits as less distinctly clustered. But the paper also identifies a separate wine clade, so it does not support the broader claim that strains from other alcoholic beverages were generally less clustered. (LLM, conf=0.82)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607 · see citing works
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400 · see citing works
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291 · see citing works
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
Katoh, K. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf436 · Cited by 17,027 · see citing works
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
Guindon, S., & Gascuel, O. (2003) · Systematic Biology · doi:10.1080/10635150390235520 · Cited by 16,698 · see citing works
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Li, H., & Durbin, R. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp698 · Cited by 12,063 · see citing works
Database resources of the National Center for Biotechnology Information: update
Wheeler, D. L. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,691 · see citing works
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Letunic, I., & Bork, P. (2021) · Nucleic Acids Res. · doi:10.1093/nar/gkab301 · Cited by 9,899 · see citing works
The IntCal20 Northern Hemisphere Radiocarbon Age Calibration Curve (0–55 cal kBP)
Reimer, P. J., Austin, W. E. N., Bard, E., Bayliss, A., Blackwell, P. G., Bronk Ramsey, C., Butzin, M., Cheng, H., Edwards, R. L., Friedrich, M., et al. (2020) · Radiocarbon · doi:10.1017/rdc.2020.41 · Cited by 7,900 · see citing works
ARB: a software environment for sequence data
Ludwig, W. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh293 · Cited by 6,649 · see citing works
<scp>bold</scp> : The Barcode of Life Data System (http://www.barcodinglife.org)
RATNASINGHAM, S., & HEBERT, P. D. N. (2007) · Molecular Ecology Notes · doi:10.1111/j.1471-8286.2007.01678.x · Cited by 6,376 · see citing works
Pérez-Riverol, Y., Csordas, A., Bai, J.-W., Bernal-Llinares, M., Hewapathirana, S., Kundu, D. J., Inuganti, A., Griss, J., Mayer, G., Eisenacher, M., et al. (2018) · Nucleic Acids Res. · doi:10.1093/nar/gky1106 · Cited by 6,216 · see citing works
Discussion Reporting of <sup>14</sup> C Data
Stuiver, M., & Polach, H. A. (1977) · Radiocarbon · doi:10.1017/s0033822200003672 · Cited by 5,640 · see citing works
Sensitive protein alignments at tree-of-life scale using DIAMOND
Buchfink, B., Reuter, K., & Drost, H.-G. (2021) · Nature Methods · doi:10.1038/s41592-021-01101-x · Cited by 5,097 · see citing works
Keller, A., Nesvizhskii, A., Kolker, E., & Aebersold, R. (2002) · Analytical Chemistry · doi:10.1021/ac025747h · Cited by 4,970 · see citing works
A statistical model for identifying proteins by tandem mass spectrometry.
Nesvizhskii, A., Keller, A., Kolker, E., & Aebersold, R. (2003) · Analytical Chemistry · doi:10.1021/ac0341261 · Cited by 4,902 · see citing works
Characterizing aquatic dissolved organic matter.
Leenheer, J. A., & Croué, J.-P. (2003) · PubMed · Cited by 4,891 · see citing works
Nilsson, R. H., Larsson, K.-H., Taylor, A. F. S., Bengtsson‐Palme, J., Jeppesen, T. S., Schigel, D., Kennedy, P. G., Picard, K. T., Glöckner, F. O., Tedersoo, L., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1022 · Cited by 3,522 · see citing works
Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
Andrews, R. M., Kubacka, I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M., & Howell, N. (1999) · Nature Genetics · doi:10.1038/13779 · Cited by 3,337 · see citing works
ANGSD: Analysis of Next Generation Sequencing Data
Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics · doi:10.1186/s12859-014-0356-4 · Cited by 2,982 · see citing works
The impact of dietary fiber on gut microbiota in host health and disease
Makki, K., Deehan, E. C., Walter, J., & Bäckhed, F. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.05.012 · Cited by 2,517 · see citing works
Beghini, F., McIver, L. J., Blanco-Míguez, A., Dubois, L., Asnicar, F., Maharjan, S., Mailyan, A., Manghi, P., Scholz, M., Thomas, A. M., et al. (2021) · eLife · doi:10.7554/elife.65088 · Cited by 2,303 · see citing works
Self-citationInteractive metagenomic visualization in a Web browser
Ondov, B., Bergman, N. H., & Phillippy, A. M. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-385 · Cited by 2,122 · see citing works
ProteoWizard: open source software for rapid proteomics tools development
Kessner, D., Chambers, M., Burke, R., Agus, D., & Mallick, P. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn323 · Cited by 2,024 · see citing works
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967 · see citing works
Bayesian community-wide culture-independent microbial source tracking
Knights, D., Kuczynski, J., Charlson, E. S., Zaneveld, J., Mozer, M. C., Collman, R. G., Bushman, F. D., Knight, R. D., & Kelley, S. T. (2011) · Nature Methods · doi:10.1038/nmeth.1650 · Cited by 1,839 · see citing works
Huson, D. H., Beier, S., Flade, I., Górska, A., El-Hadidi, M., Mitra, S., Ruscheweyh, H.-J., & Tappu, R. (2016) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1004957 · Cited by 1,761 · see citing works
Pasolli, E., Asnicar, F., Manara, S., Zolfo, M., Karcher, N., Armanini, F., Beghini, F., Manghi, P., Tett, A., Ghensi, P., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.001 · Cited by 1,591 · see citing works
Self-citationEnhancements to the ADMIXTURE algorithm for individual ancestry estimation
Alexander, D. H., & Lange, K. L. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-246 · Cited by 1,566 · see citing works
Comet: An open‐source <scp>MS</scp> / <scp>MS</scp> sequence database search tool
Eng, J. K., Jahan, T. A., & Hoopmann, M. R. (2013) · PROTEOMICS · doi:10.1002/pmic.201200439 · Cited by 1,474 · see citing works
Self-citationDouble indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
Kircher, M., Sawyer, S., & Meyer, M. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr771 · Cited by 1,106 · see citing works
The UCSC Genome Browser database: 2015 update
Rosenbloom, K., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., et al. (2014) · Nucleic Acids Res. · doi:10.1093/nar/gku1177 · Cited by 1,011 · see citing works
HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing
Weißensteiner, H., Pacher, D., Kloss‐Brandstätter, A., Forer, L., Specht, G., Bandelt, H., Kronenberg, F., Salas, A., & Schönherr, S. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw233 · Cited by 946 · see citing works
Database Resources of the National Center for Biotechnology Information
Coordinators, N. R. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw1071 · Cited by 817 · see citing works
mzML—a Community Standard for Mass Spectrometry Data
Martens, L., Chambers, M., Sturm, M., Kessner, D., Levander, F., Shofstahl, J., Tang, W. H., Römpp, A., Neumann, S., Pizarro, A., et al. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r110.000133 · Cited by 754 · see citing works
Paleoethnobotany: a handbook of procedures
(1989) · Choice Reviews Online · doi:10.5860/choice.27-2108 · Cited by 723 · see citing works
Earliest Date for Milk Use in the Near East and Southeastern Europe Linked to Cattle Herding
Evershed, R. P., Payne, S., Sherratt, A. G., Copley, M. S., Coolidge, J., Urem-Kotsu, D., Kotsakis, K., Özdoğan, M., Özdoğan, A. E., Nieuwenhuyse, O., et al. (2008) · Nature · doi:10.1038/nature07180 · Cited by 681 · see citing works
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
Gallone, B., Steensels, J., Prahl, T., Soriaga, L., Saels, V., Herrera-Malaver, B., Merlevede, A., Roncoroni, M., Voordeckers, K., Miraglia, L., et al. (2016) · Cell · doi:10.1016/j.cell.2016.08.020 · Cited by 679 · see citing works
Shteynberg, D. D., Deutsch, E. W., Lam, H., Eng, J. K., Sun, Z., Tasman, N., Mendoza, L., Moritz, R. L., Aebersold, R. H., & Nesvizhskii, A. I. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.007690 · Cited by 548 · see citing works
Self-citationEarliest evidence for cheese making in the sixth millennium bc in northern Europe
Roffet‐Salque, M., Bogucki, P., Pyzel, J., Sobkowiak‐Tabaka, I., Grygiel, R., Szmyt, M., & Evershed, R. P. (2012) · Nature · doi:10.1038/nature11698 · Cited by 513 · see citing works
Accurate sex identification of ancient human remains using DNA shotgun sequencing
Skoglund, P., Storå, J., Götherström, A., & Jakobsson, M. (2013) · Journal of Archaeological Science · doi:10.1016/j.jas.2013.07.004 · Cited by 510 · see citing works
Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
Renaud, G., Slon, V., Duggan, A. T., & Kelso, J. (2015) · Genome Biology · doi:10.1186/s13059-015-0776-0 · Cited by 509 · see citing works
The ancestral and industrialized gut microbiota and implications for human health
Sonnenburg, E. D., & Sonnenburg, J. L. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0191-8 · Cited by 489 · see citing works
Tett, A., Huang, K. D., Asnicar, F., Fehlner-Peach, H., Pasolli, E., Karcher, N., Armanini, F., Manghi, P., Bonham, K., Zolfo, M., et al. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.08.018 · Cited by 476 · see citing works
Self-citationNovo, M., Bigey, F., Beyne, E., Galéote, V., Gavory, F., Mallet, S., Cambon, B., Legras, J., Wincker, P., Casarégola, S., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0904673106 · Cited by 420 · see citing works
Filippis, F. D., Pasolli, E., Tett, A., Tarallo, S., Naccarati, A., Angelis, M. D., Neviani, E., Cocolin, L., Gobbetti, M., Segata, N., et al. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.01.004 · Cited by 399 · see citing works
Self-citationDNA from Pre-Clovis Human Coprolites in Oregon, North America
Gilbert, M. T. P., Jenkins, D. L., Götherström, A., Naverán, N., Sánchez, J. J., Hofreiter, M., Thomsen, P. F., Binladen, J., Higham, T., Yohe, R. M., et al. (2008) · Science · doi:10.1126/science.1154116 · Cited by 371 · see citing works
Early Neolithic wine of Georgia in the South Caucasus
McGovern, P. E., Jalabadze, M., Batiuk, S. D., Callahan, M. P., Smith, K. E., Hall, G. R., Kvavadze, E., Maghradze, D., Rusishvili, N., Bouby, L., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1714728114 · Cited by 369 · see citing works
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Pasolli, E., De Filippis, F., Mauriello, I. E., Cumbo, F., Walsh, A. M., Leech, J., Cotter, P. D., Segata, N., & Ercolini, D. (2020) · Nature Communications · doi:10.1038/s41467-020-16438-8 · Cited by 367 · see citing works
Self-citationDeutsch, E. W., Mendoza, L., Shteynberg, D., Slagel, J., Sun, Z., & Moritz, R. L. (2015) · PROTEOMICS – Clinical Applications · doi:10.1002/prca.201400164 · Cited by 342 · see citing works
Self-citationPaleoethnobotany: A handbook of procedures
(1989) · Quaternary Research · doi:10.1016/0033-5894(89)90114-2 · Cited by 274 · see citing works
The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
Spitaels, F., Wieme, A. D., Janssens, M., Aerts, M., Daniel, H., LANDSCHOOT, A. V., Vuyst, L. D., & Vandamme, P. A. R. (2014) · PLoS ONE · doi:10.1371/journal.pone.0095384 · Cited by 268 · see citing works
Li, L., Wang, J., Rosenberg, D., Zhao, H., Lengyel, G., & Nadel, D. (2018) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2018.08.008 · Cited by 243 · see citing works
The 5300-year-old Helicobacter pylori genome of the Iceman
Maixner, F., Krause‐Kyora, B., Turaev, D., Herbig, A., Hoopmann, M. R., Hallows, J. L., Kusebauch, U., Vigl, E. E., Malfertheiner, P., Mégraud, F., et al. (2016) · Science · doi:10.1126/science.aad2545 · Cited by 238 · see citing works
Self-citationReconstruction of ancient microbial genomes from the human gut
Wibowo, M. C., Yang, Z., Borry, M., Hübner, A., Huang, K. D., Tierney, B. T., Zimmerman, S. E., Barajas-Olmos, F. M., Contreras-Cubas, C., Garcia‐Ortíz, H., et al. (2021) · Nature · doi:10.1038/s41586-021-03532-0 · Cited by 237 · see citing works
Self-citationDistinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts
Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R. G., Serra, M. L., Libkind, D., Hutzler, M., Gonçalves, P. M., & Sampaio, J. P. (2016) · Current Biology · doi:10.1016/j.cub.2016.08.040 · Cited by 224 · see citing works
Insights from Characterizing Extinct Human Gut Microbiomes
Tito, R. Y., Knights, D., Metcalf, J. L., Obregón-Tito, A. J., Cleeland, L. M., Najar, F. Z., Roe, B. A., Reinhard, K. J., Sobolik, K. D., Belknap, S. L., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0051146 · Cited by 217 · see citing works
The theory of disappearing microbiota and the epidemics of chronic diseases
Blaser, M. J. (2017) · Nature reviews. Immunology · doi:10.1038/nri.2017.77 · Cited by 212 · see citing works
Distinct polysaccharide utilization profiles of human intestinal Prevotella copri isolates
(2019) · doi:10.1016/j.chom.2019.10.013 · Cited by 210 · see citing works
Self-citationRevealing a 5,000-y-old beer recipe in China
Wang, J., Liu, L., Ball, T., Yu, L., Li, Y., & Xing, F. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1601465113 · Cited by 206 · see citing works
Multiple recent horizontal transfers of a large genomic region in cheese making fungi
Cheeseman, K., Ropars, J., Renault, P., Dupont, J., Gouzy, J., Branca, A., Abraham, A., Ceppi, M., Conseiller, E., Debuchy, R., et al. (2014) · Nature Communications · doi:10.1038/ncomms3876 · Cited by 198 · see citing works
Could non-Saccharomyces yeasts contribute on innovative brewing fermentations?
Basso, R. F., Alcarde, A. R., & Portugal, C. B. (2016) · Food Research International · doi:10.1016/j.foodres.2016.06.002 · Cited by 193 · see citing works
Gálvez, E. J. C., Iljazović, A., Amend, L., Lesker, T. R., Renault, T. T., Thiemann, S., Hao, L., Roy, U., Gronow, A., Charpentier, E., et al. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.09.012 · Cited by 188 · see citing works
Proteomics evidence for kefir dairy in Early Bronze Age China
Yang, Y., Shevchenko, A., Knaust, A., Abuduresule, I., Li, W., Hu, X., Wang, C., & Shevchenko, A. (2014) · Journal of Archaeological Science · doi:10.1016/j.jas.2014.02.005 · Cited by 174 · see citing works
Digital Atlas of Economic Plants in Archaeology
Neef, R., Cappers, R. T. J., Bekker, R. M., Boulos, L., Dinies, M., Ertug, Z. F., Keller, N., Lahitte, M., Meulenbeld, G. J., & Zhu, Y. P. (2012) · Barkhuis eBooks · doi:10.2307/j.ctt20p56d7 · Cited by 171 · see citing works
Unipept 4.0: Functional Analysis of Metaproteome Data
Singh, R. G., Tanca, A., Palomba, A., der Jeugt, F. V., Verschaffelt, P., Uzzau, S., Martens, L., Dawyndt, P., & Mesuere, B. (2018) · Journal of Proteome Research · doi:10.1021/acs.jproteome.8b00716 · Cited by 171 · see citing works
Current views on hunter‐gatherer nutrition and the evolution of the human diet
Crittenden, A. N., & Schnorr, S. L. (2017) · American Journal of Physical Anthropology · doi:10.1002/ajpa.23148 · Cited by 169 · see citing works
A molecular analysis of dietary diversity for three archaic Native Americans
Poinar, H. N., Kuch, M., Sobolik, K. D., Barnes, I., Stankiewicz, A. B., Kuder, T., Spaulding, W. G., Bryant, V. M., Cooper, A., & Pääbo, S. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.061014798 · Cited by 160 · see citing works
DamageProfiler: fast damage pattern calculation for ancient DNA
Neukamm, J., Peltzer, A., & Nieselt, K. (2021) · Bioinformatics · doi:10.1093/bioinformatics/btab190 · Cited by 160 · see citing works
VCF-kit: assorted utilities for the variant call format
Cook, D. E., & Andersen, E. C. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx011 · Cited by 145 · see citing works
Digitale zadenatlas van Nederland
Cappers, R., Bekker, R. M., & Jans, J. E. A. (2007) · University of Groningen research database (University of Groningen / Centre for Information Technology) · Cited by 141 · see citing works
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
Banchi, E., Ametrano, C. G., Greco, S., Stanković, D., Muggia, L., & Pallavicini, A. (2020) · Database · doi:10.1093/database/baz155 · Cited by 133 · see citing works
Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi
Ropars, J., de la Vega, R. C. R., López‐Villavicencio, M., Gouzy, J., Sallet, E., Dumas, É., Lacoste, S., Debuchy, R., Dupont, J., Branca, A., et al. (2015) · Current Biology · doi:10.1016/j.cub.2015.08.025 · Cited by 128 · see citing works
Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication
Key, F. M., Posth, C., Krause, J., Herbig, A., & Bos, K. I. (2017) · Trends in Genetics · doi:10.1016/j.tig.2017.05.005 · Cited by 112 · see citing works
Human parasites in the Roman World: health consequences of conquering an empire
Mitchell, P. D. (2016) · Parasitology · doi:10.1017/s0031182015001651 · Cited by 112 · see citing works
Sumerian Beer: The Origins of Brewing Technology in Ancient Mesopotamia *
Damerow, P. (2012) · MPG.PuRe (Max Planck Society) · Cited by 107 · see citing works
Ropars, J., Didiot, E., de la Vega, R. C. R., Bennetot, B., Coton, M., Poirier, E., Coton, E., Snirc, A., Prieur, S. L., & Giraud, T. (2020) · Current Biology · doi:10.1016/j.cub.2020.08.082 · Cited by 107 · see citing works
Food, parasites, and epidemiological transitions: A broad perspective
Reinhard, K. J., Ferreira, L. F., Bouchet, F., Sianto, L., Dutra, J. M. F., Iñiguez, A. M., Leles, D., Bailly, M. L., Fugassa, M. H., Pucu, E., et al. (2013) · International Journal of Paleopathology · doi:10.1016/j.ijpp.2013.05.003 · Cited by 106 · see citing works
Bürger, J., Link, V., Blöcher, J., Schulz, A., Sell, C., Pochon, Z., Diekmann, Y., Žegarac, A., Hofmanová, Z., Winkelbach, L., et al. (2020) · Current Biology · doi:10.1016/j.cub.2020.08.033 · Cited by 103 · see citing works
RTM1: a member of a new family of telomeric repeated genes in yeast.
Ness, F., & Aigle, M. (1995) · Genetics · doi:10.1093/genetics/140.3.945 · Cited by 97 · see citing works
Doce, E. G. (2014) · Journal of Archaeological Method and Theory · doi:10.1007/s10816-014-9205-z · Cited by 96 · see citing works
The what, how and why of archaeological coprolite analysis
Shillito, L., Blong, J. C., Green, E. J., & van Asperen, E. N. (2020) · Earth-Science Reviews · doi:10.1016/j.earscirev.2020.103196 · Cited by 95 · see citing works
Independent domestication events in the blue‐cheese fungus Penicillium roqueforti
Dumas, É., Feurtey, A., de la Vega, R. C. R., Prieur, S. L., Snirc, A., Coton, M., Thierry, A., Coton, E., Piver, M. L., Roueyre, D., et al. (2020) · Molecular Ecology · doi:10.1111/mec.15359 · Cited by 94 · see citing works
Harding, A. (2013) · Cited by 91 · see citing works
Mitochondrial DNA and temperature tolerance in lager yeasts
Baker, E. P., Peris, D., Moriarty, R. V., Li, X., Fay, J. C., & Hittinger, C. T. (2019) · Science Advances · doi:10.1126/sciadv.aav1869 · Cited by 88 · see citing works
Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation
Brewster, R., Tamburini, F. B., Asiimwe, E., Oduaran, O. H., Hazelhurst, S., & Bhatt, A. S. (2019) · Trends in Microbiology · doi:10.1016/j.tim.2019.05.006 · Cited by 79 · see citing works
Evolutionary biology through the lens of budding yeast comparative genomics
Marsit, S., Leducq, J., Durand, É., Marchant, A., Filteau, M., & Landry, C. R. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.49 · Cited by 72 · see citing works
Fatty acid specific δ13C values reveal earliest Mediterranean cheese production 7,200 years ago
McClure, S. B., Magill, C., Podrug, E., Moore, A. M. T., Harper, T. K., Culleton, B. J., Kennett, D. J., & Freeman, K. H. (2018) · PLOS ONE · doi:10.1371/journal.pone.0202807 · Cited by 66 · see citing works
The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals
Maixner, F., Turaev, D., Cazenave‐Gassiot, A., Janko, M., Krause‐Kyora, B., Hoopmann, M. R., Kusebauch, U., Sartain, M. J., Guerriero, G., O’Sullivan, N. J., et al. (2018) · Current Biology · doi:10.1016/j.cub.2018.05.067 · Cited by 64 · see citing works
Self-citationIdentification and Characterization of a Novel Biotin Biosynthesis Gene inSaccharomyces cerevisiae
Wu, H., Ito, K., & Shimoi, H. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.6845-6855.2005 · Cited by 63 · see citing works
HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics
Marchione, D. M., Ilieva, I., Devins, K. M., Sharpe, D., Pappin, D., Garcia, B. A., Wilson, J. P., & Wojcik, J. B. (2020) · Journal of Proteome Research · doi:10.1021/acs.jproteome.9b00686 · Cited by 60 · see citing works
Isolation and Characterization of Live Yeast Cells from Ancient Vessels as a Tool in Bio-Archaeology
Aouizerat, T., Gutman, I., Paz, Y., Maeir, A. M., Gadot, Y., Gelman, D., Szitenberg, A., Drori, E., Pinkus, A., Schoemann, M., et al. (2019) · mBio · doi:10.1128/mbio.00388-19 · Cited by 58 · see citing works
Proteomic Analyses on an Ancient Egyptian Cheese and Biomolecular Evidence of Brucellosis
Greco, E., El-Aguizy, O., Ali, M., Foti, S., Cunsolo, V., Saletti, R., & Ciliberto, E. (2018) · Analytical Chemistry · doi:10.1021/acs.analchem.8b02535 · Cited by 57 · see citing works
Food Microbial Biodiversity and ?Microbes of Protected Origin?
Capozzi, V., & Spano, G. (2011) · Frontiers in Microbiology · doi:10.3389/fmicb.2011.00237 · Cited by 55 · see citing works
Borry, M., Cordova, B., Perri, A. R., Wibowo, M. C., Honap, T. P., Ko, J., Yu, J., Britton, K., Girdland-Flink, L., Power, R. C., et al. (2020) · PeerJ · doi:10.7717/peerj.9001 · Cited by 54 · see citing works
Pontes, A., Hutzler, M., Brito, P. H., & Sampaio, J. P. (2020) · Microorganisms · doi:10.3390/microorganisms8060903 · Cited by 54 · see citing works
An effective method for isolation of DNA from pig faeces and comparison of five different methods
Tang, J., Zeng, Z.-G., Wang, H., Yang, T., Zhang, P., Li, Y., Zhang, A., Fan, W., Zhang, Y., Yang, X., et al. (2008) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2008.07.014 · Cited by 53 · see citing works
Fox, P. F., Guinee, T. P., Cogan, T. M., & McSweeney, P. L. H. (2016) · Springer eBooks · doi:10.1007/978-1-4899-7681-9_1 · Cited by 43 · see citing works
Repeat-Preserving Decoy Database for False Discovery Rate Estimation in Peptide Identification
Moosa, J. M., Guan, S., Moran, M. F., & Ma, B. (2020) · Journal of Proteome Research · doi:10.1021/acs.jproteome.9b00555 · Cited by 42 · see citing works
Heiss, A. G., Berihuete‐Azorín, M., Antolín, F., Kubiak-Martens, L., Marinova, E., Arendt, E. K., Βiliaderis, C. G., Kretschmer, H., Lazaridou, A., Stika, H., et al. (2020) · PLoS ONE · doi:10.1371/journal.pone.0231696 · Cited by 40 · see citing works
Occurrence of Clostridium perfringens from different cultivated soils
Voidarou, C. C., Bezirtzoglou, E., Alexopoulos, A., Plessas, S., Stefanis, C., Papadopoulos, I., Vavias, S., Stavropoulou, E., Fotou, K., Tzora, A., et al. (2011) · Anaerobe · doi:10.1016/j.anaerobe.2011.05.004 · Cited by 35 · see citing works
Zarnkow, M., Otto, A., & Einwag, B. (2022) · Berghahn Books · doi:10.1515/9780857452160-009 · Cited by 35 · see citing works
Revealing the constituents of Egypt’s oldest beer using infrared and mass spectrometry
Farag, M. A., Elmassry, M. M., Baba, M., & Friedman, R. F. (2019) · Scientific Reports · doi:10.1038/s41598-019-52877-0 · Cited by 33 · see citing works
Fry, G. F. (1985) · Cited by 33 · see citing works
Prehistoric salt mining in Hallstatt, Austria. New chronologies out of small wooden fragments
Grabner, M., Wächter, E., Nicolussi, K., Bolka, M., Sormaz, T., Steier, P., Wild, E. M., Barth, F. E., Kern, A., Rudorfer, J., et al. (2021) · Dendrochronologia · doi:10.1016/j.dendro.2021.125814 · Cited by 31 · see citing works
Self-citationStPeter: Seamless Label-Free Quantification with the Trans-Proteomic Pipeline
Hoopmann, M. R., Winget, J. M., Mendoza, L., & Moritz, R. L. (2018) · Journal of Proteome Research · doi:10.1021/acs.jproteome.7b00786 · Cited by 30 · see citing works
Self-citationÇakmakçı, S., Gündoğdu, E., Hayaloğlu, A. A., Daǧdemi̇r, E., Gürses, M., Çeti̇n, B., & KAHYAOĞLU, D. T. (2012) · International Journal of Food Science & Technology · doi:10.1111/j.1365-2621.2012.03116.x · Cited by 28 · see citing works
The Cuisine of Ancient Mesopotamia
Bottéro, J. (1985) · The Biblical Archaeologist · doi:10.2307/3209946 · Cited by 28 · see citing works
Der bronzezeitliche Bergbau in Hallstatt. Neue Lebensbilder zum Salzbergwerk
Reschreiter, H., & Kowarik, K. (2019) · Archaeologia Austriaca · doi:10.1553/0x003b1206 · Cited by 25 · see citing works
Self-citationFesti, D., Brandner, D., Grabner, M., Knierzinger, W., Reschreiter, H., & Kowarik, K. (2020) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2020.102670 · Cited by 24 · see citing works
Self-citationHeiss, A. G., Jakobitsch, T., Wiesinger, S., & Trebsche, P. (2021) · PLoS ONE · doi:10.1371/journal.pone.0248287 · Cited by 19 · see citing works
Stika, H. (2022) · Berghahn Books · doi:10.1515/9780857452160-010 · Cited by 17 · see citing works
Microbial Ecology of Traditional Beer Fermentations
Spitaels, F., Wieme, A. D., Snauwaert, I., Vuyst, L. D., & Vandamme, P. A. R. (2016) · Caister Academic Press eBooks · doi:10.21775/9781910190616.07 · Cited by 15 · see citing works
García, S., Vidal, J. E., Heredia, N. L., & Juneja, V. K. (2019) · ASM Press eBooks · doi:10.1128/9781555819972.ch19 · Cited by 12 · see citing works
Study on the sugar content of blue-veined “Gorgonzola” PDO cheese
Monti, L., Pelizzola, V., Povolo, M., Fontana, S., & Contarini, G. (2019) · International Dairy Journal · doi:10.1016/j.idairyj.2019.03.009 · Cited by 7 · see citing works
Fermentierter Brei und vergorenes Malz
Rosenstock, E., & Scheibner, A. (2017) · Refubium (Universitätsbibliothek der Freien Universität Berlin) · doi:10.17169/refubium-24306 · Cited by 6 · see citing works
Grant, W. D. (2015) · Bergey's Manual of Systematics of Archaea and Bacteria · doi:10.1002/9781118960608.gbm00484 · Cited by 1 · see citing works
Flagged first, then by citations
6 of the 125 references couldn’t be matched to a known paper.
Research works printed but not linked: 3
- [22]Grant W.D. Halococcus Trujillo M.E. Dedysh S. DeVos P. Hedlund B. Kämpfer P. Rainey F.A. Whitman W.B. Bergey’s Manual of Systematics of Archaea and Bacteria 2015 John Wiley and Sons
- [56]Cantor M.D. van den Tempel T. Hansen T.K. Ardö Y. Blue cheese McSweeney P.L.H. Fox P.F. Cotter P.D. Everett D.W. Cheese, 2017 Elsevier 929 954
- [58]Desmasures N. Mold-ripened varieties Batt C. Encyclopedia of Food Microbiology 2014 Elsevier 409 416
Cited by
Sorted by citations
Western diets and chronic diseases
Adolph, T. E., & Tilg, H. (2024) · Nature Medicine · doi:10.1038/s41591-024-03165-6 · Cited by 203 · see citing works
“Indeed, the recommendation to increase vegetable and fruit intake and revealed that diet Westernization with more-refined food processing began during the Baroque period in the eighteenth century 27 .”
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino, N., Blanco-Míguez, A., Punčochář, M., Mengoni, C., Pinto, F., Tatti, A., Manghi, P., Armanini, F., Avagliano, M., Barcenilla, C., et al. (2024) · Cell · doi:10.1016/j.cell.2024.07.039 · Cited by 146 · see citing works
“119 We performed phylogenetic analysis through StrainPhlAn and integrated our set of food and human metagenomes with 157 isolate genomes from liquid state fermentation (LSF, e.g., from wine and beer) and solid-substrate fermentation (SSF, e.g., from bread and sake) with yeast 115 (STAR Methods).”
Self-citationBalasubramanian, R., Schneider, E., Gunnigle, E., Cotter, P. D., & Cryan, J. F. (2024) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2024.105562 · Cited by 136 · see citing works
“…concurrently enhancing flavour profile (Liu et al., 2019b; Cai et al., 2019; Mandha et al., 2022; Peraza and Perron, 2022), reducing the toxicity of raw materials/controlling pathogenic microorganisms and simultaneously allowing for their digestion (Reddy and Pierson, 1994; Maixner et al., 2021).”
Piperni, E., Nguyen, L. H., Manghi, P., Kim, H., Pasolli, E., Andreu‐Sánchez, S., Arrè, A., Bermingham, K. M., Blanco‐Míguez, A., Manara, S., et al. (2024) · Cell · doi:10.1016/j.cell.2024.06.018 · Cited by 103 · see citing works
Self-citationBlanco‐Míguez, A., Gálvez, E. J. C., Pasolli, E., Filippis, F. D., Amend, L., Huang, K. D., Manghi, P., Lesker, T.-R., Riedel, T., Cova, L., et al. (2023) · Cell Host & Microbe · doi:10.1016/j.chom.2023.09.013 · Cited by 80 · see citing works
Self-citationMetagenomic Insight into The Global Dissemination of The Antibiotic Resistome
Zhang, Q., Xu, N., Lei, C., Chen, B., Wang, T., Ma, Y., Lu, T., Peñuelas, J., Gillings, M. R., Zhu, Y., et al. (2023) · Advanced Science · doi:10.1002/advs.202303925 · Cited by 49 · see citing works
Human microbiome variance is underestimated
Shanahan, F., Ghosh, T. S., & O’Toole, P. W. (2023) · Current Opinion in Microbiology · doi:10.1016/j.mib.2023.102288 · Cited by 41 · see citing works
Archaeology meets environmental genomics: implementing sedaDNA in the study of the human past
Özdoğan, K. T., Gelabert, P., Hammers, N., Altınışık, N. E., de Groot, G. A., & Plets, G. (2024) · Archaeological and Anthropological Sciences · doi:10.1007/s12520-024-01999-2 · Cited by 24 · see citing works
“Ancient DNA analysis of micro and macro remains can increase the taxonomic resolution to which they can be identified (Hagan et al. 2020; Kuch and Poinar 2012 ; Maixner et al. 2021; Nodari et al. 2021; Oskam et al. 2012).”
BackgroundSchaschl, H., Göllner, T., & Morris, D. L. (2022) · Scientific Reports · doi:10.1038/s41598-022-08588-0 · Cited by 21 · see citing works
Kapun, M., Schwentner, M., Haring, E., Akkari, N., Kroh, A., Kruckenhauser, L., Palandačić, A., & Vohland, K. (2025) · Natural History Collections and Museomics · doi:10.3897/nhcm.2.161331 · Cited by 19 · see citing works
A genomic view on lactic metabolism
Qiao, N., & Gänzle, M. G. (2025) · Food Microbiology · doi:10.1016/j.fm.2025.104945 · Cited by 18 · see citing works
A comprehensive overview of blue-veined cheeses
Ferroukhi, I., Chassard, C., & Mardon, J. (2024) · International Dairy Journal · doi:10.1016/j.idairyj.2024.105926 · Cited by 16 · see citing works
Huang, K. D., Amend, L., Gálvez, E. J. C., Lesker, T.-R., de Oliveira, R., Bielecka, A., Blanco‐Míguez, A., Valles‐Colomer, M., Ruf, I., Pasolli, E., et al. (2024) · Cell Reports Medicine · doi:10.1016/j.xcrm.2024.101426 · Cited by 16 · see citing works
“18,20,21 Shotgun metagenome sequencing and advances in bio-informatic analyses have recently uncovered that the family Pre-votellaceae , the genera Prevotella and Segatella , and its most prevalent species in humans, Segatella copri (formerly Prevotella copri ), display a much larger taxonomic and…”
BackgroundSelf-citationCurious case of the history of fermented milk: tangible evidence
Sakandar, H. A., & Zhang, H. (2022) · 中国科学通报:英文版 · doi:10.1016/j.scib.2022.07.013 · Cited by 14 · see citing works
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Rozwalak, P., Barylski, J., Wijesekara, Y., Dutilh, B. E., & Zieleziński, A. (2024) · Nature Communications · doi:10.1038/s41467-023-44370-0 · Cited by 13 · see citing works
Zhao, Z., & Gänzle, M. G. (2025) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2025.105113 · Cited by 12 · see citing works
A review of suspension trapping digestion method in bottom‐up proteomics
Duong, V., Park, J., & Lee, H. (2022) · Journal of Separation Science · doi:10.1002/jssc.202200297 · Cited by 12 · see citing works
Grasso, G., Bianciotto, V., & Marmeisse, R. (2024) · Microbial Biotechnology · doi:10.1111/1751-7915.14390 · Cited by 10 · see citing works
“Faeces are more rarely preserved with their original intestinal , but exceptional cases of preservation do exist, such as in salt-rich environments (salt mines) (Maixner et al., 2021) or dry desert ones (Wibowo et al., 2021) that allow for a rapid desiccation of the samples.”
BackgroundPhylogeny and disease associations of a widespread and ancient intestinal bacteriophage lineage
de Jonge, P. A., van den Born, B. H., Zwinderman, A. H., Nieuwdorp, M., Dutilh, B. E., & Herrema, H. (2024) · Nature Communications · doi:10.1038/s41467-024-50777-0 · Cited by 10 · see citing works
The nonindustrialised microbiome in a modern world
Shanahan, F., Ghosh, T. S., Molloy, M. G., & O’Toole, P. W. (2022) · Clinical Science · doi:10.1042/cs20220203 · Cited by 10 · see citing works
Grasso, G., Debruyne, R., Adamo, M., Rué, O., Lejzerowicz, F., Bittner, L., Bianciotto, V., & Marmeisse, R. (2025) · Molecular Ecology Resources · doi:10.1111/1755-0998.14122 · Cited by 8 · see citing works
“…as diverse as archaeological artefacts such as dental calculus and desiccated or mineralised faeces (Hagan et al. 2020), thus giving access to ancient human/animal oral and intestinal microbiomes (Brealey et al. 2021; Fellows Yates et al. 2021; Maixner et al. 2021; Quagliariello et al. 2022).”
Warinner, C. (2022) · Journal of Anthropological Research · doi:10.1086/721976 · Cited by 7 · see citing works
“While blue cheeses are thought to have first developed during the medieval period, followed bymajor changes due to intense microbial selection during the nineteenth and twentieth centuries (Ropars et al. 2020), the recent discovery of ancient DNA evidence of Penicillium roqueforti in human paleofeces from an archaeolo…”
BackgroundInfluentialPaskulin, L., McGrath, K. M., Hagan, R., Speller, C., Berihuete‐Azorín, M., Stika, H., Valamoti, S.-M., & Hendy, J. (2024) · Journal of Archaeological Science · doi:10.1016/j.jas.2024.106019 · Cited by 6 · see citing works
Heiss, A. G., Zech-Matterne, V., Monteix, N., Tillier, M., & Noûs, C. (2021) · Gallia · doi:10.4000/gallia.6298 · Cited by 6 · see citing works
“2013 ; Maixner et al .”
Barsch, E., Kowarik, K., Rodler, K., Hörweg, C., Reschreiter, H., Sattmann, H., & Walochnik, J. (2023) · Scientific Reports · doi:10.1038/s41598-023-38989-8 · Cited by 6 · see citing works
Self-citationIntegration of modern technologies to advance dietary assessment
Cuparencu, C., Diener, C., Wilson, T., Gibbons, S. M., & Lucassen, D. A. (2026) · Nature Food · doi:10.1038/s43016-025-01290-0 · Cited by 5 · see citing works
“In modern humans, most research has focused on bacterial DNA linked to specific food groups (for example, Saccharomyces cerevisiae for beer/bread and Penicillium roqueforti for blue cheese) 77 .”
Orthrus: an AI-powered, cloud-ready, and open-source hybrid approach for metaproteomicsPreprint
Chiang, Y., & Collins, M. J. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.15.623814 · Cited by 4 · see citing works
Metaproteomic approaches to ancient foodways: A review
Evans, M. (2025) · Journal of Archaeological Science · doi:10.1016/j.jas.2025.106211 · Cited by 5 · see citing works
Cantor, M. D., & Hornnes, M. H. D. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-15956-5.00031-2 · Cited by 4 · see citing works
Ancient microbial DNA and proteins preserve in concretions covering human remains
Bonucci, B., de-Dios, T., Barbieri, R., Thompson, J. E., Panella, S., Radina, F., Sivilli, S., Kabral, H., Solnik, A., Tafuri, M. A., et al. (2025) · iScience · doi:10.1016/j.isci.2025.113182 · Cited by 3 · see citing works
A First Draught: Pitfalls and Potentials in the Archaeological Chemistry of Beer
Driscoll, J. M., & Damm, J. C. (2023) · ACS symposium series · doi:10.1021/bk-2023-1446.ch002 · Cited by 2 · see citing works
Kowarik, K., Brandner, D., Hofmann, K., Strasser, M., & Reschreiter, H. (2022) · Internet Archaeology · doi:10.11141/ia.60.7 · Cited by 2 · see citing works
Self-citationTraditional Norwegian Kveik Yeast: An Ancient Sister Group to Domesticated Saccharomyces cerevisiaePreprint
Dondrup, M., Eiken, H. G., Martinussen, A. O., Haugland, L. K., Holdhus, R., Dolan, D., Grellscheid, S. N., Hagen, S. B., Elameen, A., & Myking, T. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.07.03.547515 · Cited by 2 · see citing works
“Reads from (Preiss et al. 2018) contained some Illumina universal adapter sequences that were not properly removed by Trimmomatic and all samples were therefore subjected to a second round of adapter trimming with cutadapt (Martin 2011).”
MethodHurst, C. J. (2023) · doi:10.1002/9781119850007.ch1 · Cited by 2 · see citing works
Digesting the data: Proper validation in ancient metagenomic studies is essentialPreprint
Pach, A. L., Lanigan, L. T., Niemann, J., Pedersen, M. W., & Schroeder, H. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.02.27.581519 · Cited by 2 · see citing works
Abdalrahem, A., Noûs, C., Duplessis, S., Frey, P., Stoeckel, S., & Halkett, F. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.03.680262 · Cited by 2 · see citing works
Mirzakhani, E., Mohammadi, M. A., Ansari, F., & Pourjafar, H. (2024) · Methods and protocols in food science · doi:10.1007/978-1-0716-4144-6_9 · Cited by 1 · see citing works
Evidence for Historic and Ongoing Human‐Mediated Dispersal of Yeast
Ruffieux, M., & Heil, C. S. (2026) · Molecular Ecology · doi:10.1111/mec.70247 · Cited by 1 · see citing works
“Future studies will benefit from ancient/ historical DNA sampling of archaeological remains to add additional clarity on divergence times (Liu et al. 2024; Maixner et al. 2021).”
Mouali, Y. E., Tawk, C., Huang, K. D., Sivapornnukul, P., Mengoni, C., Segata, N., & Strowig, T. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.04.006 · Cited by 3 · see citing works
Self-citationTraditional Foods as Sources of Probiotics
Singh, B., Mal, G., Kalra, R. S., & Marotta, F. (2024) · Springer eBooks · doi:10.1007/978-3-031-65455-8_2 · Cited by 1 · see citing works
Rondini, P., Patrizi, G., & Benedetto, G. E. D. (2025) · Heritage · doi:10.3390/heritage8060198 · Cited by 1 · see citing works
Enzymatic bromination of marine fungal extracts for enhancement of chemical diversity
Cochereau, B., du Pont, T. R., Pouchus, Y. F., Taşdemir, D., Meslet‐Cladière, L., & Roullier, C. (2023) · Biocatalysis and Agricultural Biotechnology · doi:10.1016/j.bcab.2023.102786 · Cited by 1 · see citing works
Taxonize-gb: A tool for filtering GenBank non-redundant databases based on taxonomyPreprint
Sarhan, M. S., Filosi, M., Maixner, F., & Fuchsberger, C. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.22.586347 · Cited by 1 · see citing works
Self-citationThe Impact of Reference Genome Divergence on Ancient DNA Damage Detection in Metagenomic ContextsPreprint
Guinet, B., Sharif, M. B., & van der Valk, T. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.16.665190 · Cited by 1 · see citing works
“Additionally, cases where the host and microbes are believed to have died simultaneously, similar damage patterns are often interpreted as evidence of their contemporaneity (e.g., (Ferrari et al. 2020; Philips et al. 2017; Feldman et al. 2016; Maixner et al. 2021)).”
Fulminante, F. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-90799-6.00243-3
Phylogeny and disease links of a widespread and ancient gut phage lineagePreprint
de Jonge, P. A., van den Born, B. H., Zwinderman, A. H., Nieuwdorp, M., Dutilh, B. E., & Herrema, H. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.29.555303
A Brief History of Salt and Its Influence on Civilization
Mohriak, W. (2025) · Geophysical monograph · doi:10.1002/9781119405245.ch1
A History of Mountain Archaeology
Walsh, K., BETTS, A. V. G., Angelis, H. H. D., & Mocci, F. (2025) · Oxford University Press eBooks · doi:10.1093/oxfordhb/9780197608005.013.3
Niemann, J., Huang, Y., Lanigan, L. T., Grijalba, A. L. W., Dunn, R. R., Sikora, M., & Schroeder, H. (2025) · Genome biology · doi:10.1186/s13059-025-03818-w
“…HS2604, decontamination converted the previously uneven T. trichiura alignment into one with even coverage—consistent with additional support from Maixner et al. [34], who recovered a T. trichiura mitochondrial genome and reported hits to the cytochrome c oxidase subunit I gene for this sample.”
InfluentialThe Economic and Ecological Impact of Dairy Production in Alpine Prehistory: A Numerical Approach
Carrer, F. (2025) · Journal of Computer Applications in Archaeology · doi:10.5334/jcaa.209
Strategies for reducing salt content and nutritional valorization of blue-veined cheeses
Ferroukhi, I. (2023) · theses.fr (ABES) · doi:10.70675/9c89f041z1784z49a8z8592z5d0905642dfb
Rebay‐Salisbury, K., Waltenberger, L., Fritzl, M., Skerjanz, H., Verdianu, D., Quade, L., Spannagl‐Steiner, M., Wolf, M., Kanz, F., Frère, A., et al. (2026) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2026.105740 · Cited by 1 · see citing works
Cosmopolitan gut bacteriophages expand the phenotype of health-related bacteriaPreprint
Rozwalak, P., Zieleziński, A., Fontalvo, M. A. D. A., Ménard, S., Auger, S., & Dutilh, B. E. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.08.723808
The fungal lives of ruins: paths forward for a mushroom archaeology
Venovcevs, A. (2026) · Archaeological Dialogues · doi:10.1017/s1380203826100270
Evaluating microstructural malting identification markers in charred archaeological cereal grains
Cordes, A., Henriksen, P. S., Taube, M., Johansen, S. M., Hald, M. M., Sørensen, L., Haase, K., Møller, N. A., Nielsen, B. H., Jørgensen, T., et al. (2026) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2026.105847
Historical aspects of beer consumption
Maixner, F., Hoffmann, C., Eizaguirre, J. I., Hutzler, M., & Zarnkow, M. (2026) · Beer in Health and Disease Prevention · doi:10.1016/b978-0-443-22332-7.00017-9
Self-citationPedergnana, A., & Cova, M. (2026) · Heritage · doi:10.3390/heritage9090372
Burge, K., Velsko, I. M., Salazar‐García, D. C., Uriarte, M. H., Maurandi, J. L., & Warinner, C. (2026) · Molecular Ecology Resources · doi:10.1111/1755-0998.70201
Seasonal and multi-functional use of industrial space at Iron Age Tel Shiqmona, Israel
Ramírez, I. O., Shalvi, G., Pinsky, S., Jacobson, M., Zuckerman‐Cooper, R., Gilboa, A., & Friesem, D. E. (2026) · PLoS ONE · doi:10.1371/journal.pone.0355104
“Even in unique industrial contexts like the Hallstatt salt mines in Austria, seasonal insights focused on the seasonal diet of laborers rather than the internal spatial organization and functional rotation of the production site [52].”
Zuckerman, M. K., Hofman, C. A., Rayfield, K. M., Lin, A. T., Liu, H., Austin, R. M., Kistler, L., & Sholts, S. B. (2026) · International Journal of Paleopathology · doi:10.1016/j.ijpp.2026.09.004
- Authors
- Maixner, F., Sarhan, M. S., Huang, K. D., Tett, A., Schoenafinger, A., Zingale, S., Blanco-Míguez, A., Manghi, P., Cemper-Kiesslich, J., Rosendahl, W., Kusebauch, U., Morrone, S. R., Hoopmann, M. R., Rota-Stabelli, O., Rattei, T., Moritz, R. L., Oeggl, K., Segata, N., Zink, A., Reschreiter, H., & Kowarik, K.
- Affiliations
- Eurac Research (IT)
- Fondazione Edmund Mach (IT)
- University of Vienna (AT)
- University of Trento (IT)
- Reiss Engelhorn Museum (DE)
- Institute for Systems Biology (US)
- Universität Innsbruck (AT)
- Natural History Museum Vienna (AT)
- Corresponding author
- Maixner, Frank
- Kowarik, Kerstin
- ORCID
- Maixner, Frank
- Sarhan, Mohamed S.
- Huang, Kun D.
- Tett, Adrian
- Schoenafinger, Alexander
- Zingale, Stefania
- Manghi, Paolo
- Cemper-Kiesslich, Jan
- Rosendahl, Wilfried
- Kusebauch, Ulrike
- Morrone, Seamus R.
- Hoopmann, Michael R.
- Rattei, Thomas
- Moritz, Robert L.
- Oeggl, Klaus
- Segata, Nicola
- Zink, Albert
- Reschreiter, Hans
- Kowarik, Kerstin
- Venue
- Current Biology
- Publisher
- Elsevier BV
- Published
- 2021-12
- Volume
- 31
- Issue
- 23
- Pages
- 5149-5162.e6
- ISSN
- 0960-9822 (ISSN-L)
- PMC
- PMC8660109
- OpenAlex
- W3206940038
- Cited by
- 62
- References
- 125
- Citations by year
- 2026: 12 · 2025: 14 · 2024: 18 · 2023: 11 · 2022: 6 · 2021: 1
- FWCI
- 44.30
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Current Biology (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Institutional Research Information System (Università degli Studi di Trento) (submittedVersion, cc-by-nc-nd)
- CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach) (submittedVersion, cc-by-nc-nd)
- Open Research (University of Surrey) (submittedVersion, cc-by-nc-nd)
- Funders
- National Science Foundation (1920268)
- Provincia autonoma di Bolzano - Alto Adige (FESR1078-MummyLabs)
- National Institutes of Health (1s10od026936-01, GM087221)
- European Regional Development Fund (2014-2020_CALL-FESR 2017, FESR1078-MummyLabs)
- National Institute of General Medical Sciences (R01GM087221)
- Topics
- Social Sciences › Arts and Humanities › Archeology › Paleopathology and ancient diseases
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Archaeology and ancient environmental studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- paleofeces, salt mines, blue cheese, beer, Penicillium roqueforti, Saccharomyces cerevisiae, food fermentation, cereals, Vicia faba, molecular archaeology
- MeSH terms
- Gastrointestinal Microbiome, Animals, Beer, Cheese, Diet, Fungi, Proteomics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review