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Host-Microbiota Interactions Shape Local and Systemic Inflammatory Diseases
Open accessAbstract
Recent advances in understanding how the mammalian immune system and intestinal microbiota functionally interact have yielded novel insights for human health and disease. Modern technologies to quantitatively measure specific members and functional characteristics of the microbiota in the gastrointestinal tract, along with fundamental and emerging concepts in the field of immunology, have revealed numerous ways in which host-microbiota interactions proceed beneficially, neutrally, or detrimentally for mammalian hosts. It is clear that the gut microbiota has a strong influence on the shape and quality of the immune system; correspondingly, the immune system guides the composition and localization of the microbiota. In the following review, we examine the evidence that these interactions encompass homeostasis and inflammation in the intestine and, in certain cases, extraintestinal tissues. Lastly, we discuss translational therapies stemming from research on host-microbiota interactions that could be used for the treatment of chronic inflammatory diseases.
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“Notably, the microbiota orchestrates the local immune system in the intestine (67), and shapes immune and non-immune cells located in distal sites and acting systemically (68, 69).”
From The gut-brain axis: how microbiota and host inflammasome influence brain physiology and pathology (2020) · cites this paper as [67]
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Cites
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
Diet rapidly and reproducibly alters the human gut microbiome
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease
Hugot, J.-P., Chamaillard, M., Zouali, H., Lesage, S., Cézard, J.-P., Belaiche, J., Almer, S., Tysk, C., O'Morain, C. A., Gassull, M., et al. (2001) · Nature · doi:10.1038/35079107 · Cited by 5,591
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Furusawa, Y., Obata, Y., Fukuda, S., Endo, T. A., Nakato, G., Takahashi, D., Nakanishi, Y., Uetake, C., Kato, K., Kato, T., et al. (2013) · Nature · doi:10.1038/nature12721 · Cited by 5,549
The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis
Smith, P. M., Howitt, M. R., Panikov, N., Michaud, M., Gallini, C. A., Bohlooly-Y, M., Glickman, J. N., & Garrett, W. S. (2013) · Science · doi:10.1126/science.1241165 · Cited by 5,413
A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease
Ogura, Y., Bonen, D. K., Inohara, N., Nicolae, D. L., Chen, F. F., Ramos, R., Britton, H., Moran, T., Karaliuskas, R., Duerr, R. H., et al. (2001) · Nature · doi:10.1038/35079114 · Cited by 5,030
The gut microbiota shapes intestinal immune responses during health and disease
Round, J. L., & Mazmanian, S. K. (2009) · Nature Reviews Immunology · doi:10.1038/nri2515 · Cited by 5,029
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
Arpaia, N., Campbell, C., Fan, X., Dikiy, S., van der Veeken, J., deRoos, P., Liu, H., Cross, J. R., Pfeffer, K., Coffer, P. J., et al. (2013) · Nature · doi:10.1038/nature12726 · Cited by 4,838
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Items 101–129 of 129
Rubel, M. Z. U., Ichii, O., Namba, T., Masum, M. A., Chuluunbaatar, T., Hiraishi, M., Nakamura, T., & Kon, Y. (2024) · EXPERIMENTAL ANIMALS · doi:10.1538/expanim.23-0129 · Cited by 3
Enrico, V. T., Hébert, J. R., Mugford, G. J., Gao, Z., Wang, P., Shivappa, N., & Sowa, G. (2023) · American Journal of Lifestyle Medicine · doi:10.1177/15598276231189682 · Cited by 3
Huang, H., Zhao, L., Kong, X., Zhu, J., & Lu, J. (2024) · Food Bioscience · doi:10.1016/j.fbio.2024.105687 · Cited by 3
FILHO, R. D. S., Sampaio, K. D. O., Rocha, M. A., de Castro, B. K. L., Oliveira, A. T. C., Neto, B. B. E. L., Olinda, R. G., & Nunes‐Pinheiro, D. C. S. (2020) · PubVet · doi:10.31533/pubvet.v14n6a591.1-12 · Cited by 3
Tan, R., Han, C., Sun, D., Zhang, X., Liu, T., Sun, H., & Wang, Z. (2025) · Medicine · doi:10.1097/md.0000000000042925 · Cited by 3
Targeting the intratumoral microbiota to overcome cancer immunotherapy resistance
Tang, B., Jiang, T., Lin, Y. N., Zhang, W., Fan, H., Yang, M., Li, B., Liu, Y., Li, C., Xl, J., et al. (2026) · Interdisciplinary medicine · doi:10.1002/inmd.70155 · Cited by 1
Enteric Neurotoxicity and Salsolinol
Kurnik‐Łucka, M., & Gil, K. (2022) · Springer eBooks · doi:10.1007/978-3-031-15080-7_191 · Cited by 1
Genetic and epidemiological factors in the pathogenesis of neurodegenerative disorders
Borówka, J., & Skotnicka, E. (2024) · Aktualności Neurologiczne · doi:10.15557/an.2024.0007 · Cited by 1
Interplay of Microbiome, Inflammation, and Immunity in Inflammatory Lung Diseases
Malhotra, H., Kamboj, A., Kaushik, P., & Gautam, R. K. (2022) · Springer eBooks · doi:10.1007/978-981-16-8957-4_4 · Cited by 1
The Macro Influence of the Microbiome
Fink, P. J. (2017) · The Journal of Immunology · doi:10.4049/jimmunol.1690022
Microbiota development and mucosal IgA responses during childhood in health and allergic disease
Dzidic, M. (2019) · RiuNet (Universitat Politècnica de València) · doi:10.4995/thesis/10251/125479
An Impressive End to a Distinguished Career
Fox, B. A., Schaeffer, B. S., & Connelly, J. E. (2006)
Enteric Neurotoxicity and Salsolinol
Kurnik‐Łucka, M., & Gil, K. (2021) · Springer eBooks · doi:10.1007/978-3-030-71519-9_191-1
The microbiome, IgGs and schizophrenia. A R20+ adult-only story
D’Acquisto, F. (2022) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2022.11.009
Rheumatic diseases: The microbiota-immunity axis in development and treatment
Niccolai, E., Bellando-Randone, S., & Amedei, A. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-85831-1.00006-1
Soil intake modifies the gut microbiota and alleviates ovalbumin-induced mice asthma inflammationPreprint
Li, M., Li, N., Dong, Y., Zhang, H., Bai, Z., Zhang, R., Fei, Z., Zhu, W., Xiao, P., Sun, X. S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.31.543010
Jasinska, A. J., Dong, T. S., Lagishetty, V., Katzka, W. R., Jacobs, J. P., Schmitt, C. A., Cramer, J. D., Ma, D., Coetzer, W. G., Grobler, J. P., et al. (2020) · Figshare · doi:10.6084/m9.figshare.13203460
Jia, B., Tang, L., Liu, H., Chen, W., Chen, Q., Zhong, M., & Yin, A. (2024) · Figshare · doi:10.6084/m9.figshare.26658733
Jia, B., Tang, L., Liu, H., Chen, W., Chen, Q., Zhong, M., & Yin, A. (2024) · Figshare · doi:10.6084/m9.figshare.24934196
Jia, B., Tang, L., Liu, H., Chen, W., Chen, Q., Zhong, M., & Yin, A. (2024) · Figshare · doi:10.6084/m9.figshare.26658730
Jia, B., Tang, L., Liu, H., Chen, W., Chen, Q., Zhong, M., & Yin, A. (2024) · Figshare · doi:10.6084/m9.figshare.24934622
Jasinska, A. J., Dong, T. S., Lagishetty, V., Katzka, W. R., Jacobs, J. P., Schmitt, C. A., Cramer, J. D., Ma, D., Coetzer, W. G., Grobler, J. P., et al. (2020) · Figshare · doi:10.6084/m9.figshare.13203457
Tu, K.-C., Yu, R.-Y., Lin, Y.-H., Chien, C.-C., & Lu, C.-L. (2023) · Figshare · doi:10.6084/m9.figshare.24123939
Jasinska, A. J., Dong, T. S., Lagishetty, V., Katzka, W. R., Jacobs, J. P., Schmitt, C. A., Cramer, J. D., Ma, D., Coetzer, W. G., Grobler, J. P., et al. (2020) · Figshare · doi:10.6084/m9.figshare.13203463
Bellerose, M., Fravalo, P., Mainville, I., Arcand, Y., & Thibodeau, A. (2023) · Figshare · doi:10.6084/m9.figshare.22978334
Zhang, P., Jiang, G., Ma, C., Wang, Y., Yan, E., He, L., Guo, J., Zhang, X., & Yin, J. (2024) · Figshare · doi:10.6084/m9.figshare.26609142
Détection et régulation du peptidoglycane lors de la réponse antibactérienne chez la Drosophile
Capo, F. (2017) · theses.fr (ABES) · doi:10.70675/bd5b4c7cz39edz46fdzb3a9zc9d1147a9d2b
Formation and functions of biofilms in the gut anaerobe Bacteroides thetaiotaomicron
Mihajlovic, J. (2017) · theses.fr (ABES) · doi:10.70675/ccb19c47zb427z4507zbbfazd7fd1e12c71d
Farah, H., Kubaev, A., Hanumanthayya, M., Al-Hussein, M. A., Mutee, A. F., Axmedova, F., Бекзод, Б. Э., & Shefali (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1955829
Metadata
- Authors
- Grigg, J. B., & Sonnenberg, G. F.
- Affiliations
- Weill Cornell Medicine (US)
- Corresponding author
- Sonnenberg, Gregory F
- Venue
- The Journal of Immunology
- Publisher
- Oxford University Press (OUP)
- Published
- 2017-01
- Volume
- 198
- Issue
- 2
- Pages
- 564-571
- ISSN
- 0022-1767 (ISSN-L)
- 1550-6606
- PMC
- PMC5228396
- OpenAlex
- W2577439289
- Cited by
- 130
- References
- 124
- Citations by year
- 2026: 2 · 2025: 6 · 2024: 19 · 2023: 21 · 2022: 14 · 2021: 17 · 2020: 21 · 2019: 9 · 2018: 9 · 2017: 11
- FWCI
- 1.27
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The Journal of Immunology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Crohn's and Colitis Foundation of America
- American Asthma Foundation
- Crohn's and Colitis Foundation
- Searle Scholars Program
- National Institutes of Health (DP5OD012116)
- National Institute of Allergy and Infectious Diseases (U01AI095608, R01AI123368)
- National Institute of Diabetes and Digestive and Kidney Diseases (R21DK110262)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Gastroenterology › Inflammatory Bowel Disease
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Keywords
- host-microbiota interactions, gut microbiota, intestinal inflammation, systemic inflammation, immune system, microbiota composition, immune homeostasis, chronic inflammatory diseases, microbiota-based therapy
- MeSH terms
- Gastrointestinal Microbiome, Animals, Homeostasis, Humans, Immune System, Inflammation
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