Cited by 65Computational Drug Discovery MethodsGraph theory and applicationsAdvanced Chemical Physics Studies

Per Aspera Ad Astra : Application of Simplex Qsar Approach in Antiviral Research

Muratov, Eugene N, Artemenko, Anatoly G, Varlamova, Ekaterina V, Polischuk, Pavel G, Lozitsky, Victor P, Fedchuk, Alla S, Lozitska, Regina L, Gridina, Tat’yana L +8 more·2010·Future Medicinal Chemistry

Abstract

This review explores the application of the Simplex representation of molecular structure (SiRMS) QSAR approach in antiviral research. We provide an introduction to and description of SiRMS, its application in antiviral research and future directions of development of the Simplex approach and the whole QSAR field. In the Simplex approach every molecule is represented as a system of different simplexes (tetratomic fragments with fixed composition, structure, chirality and symmetry). The main advantages of SiRMS are consideration of the different physical-chemical properties of atoms, high adequacy and good interpretability of models obtained and clear procedures for molecular design. The reliability of developed QSAR models as predictive virtual screening tools and their ability to serve as the basis of directed drug design was validated by subsequent synthetic and biological experiments. The SiRMS approach is realized as the complex of the computer program 'HiT QSAR', which is available on request.

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Crossref · 10.4155/fmc.10.194

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Authors
Muratov, E. N., Artemenko, A. G., Varlamova, E. V., Polischuk, P. G., Lozitsky, V. P., Fedchuk, A. S., Lozitska, R. L., Gridina, T. L., Koroleva, L. S., Sil’nikov, V. N., Galabov, A. S., Makarov, V. A., Riabova, O. B., Wutzler, P., Schmidtke, M., & Kuz’min, V. E.
Affiliations
  • University of North Carolina at Chapel Hill (US)
  • National Academy of Sciences of Ukraine (UA)
  • I.I. Mechnikov Ukrainian Anti-Plague Research Institute, Odessa, Ukraine, Cerkovnaya 2/4, Odessa65003, Ukraine
  • Laboratory of Organic Synthesis, Institute of Chemical Biology and Fundamental Medicine, Siberian Division, Russian Academy of Sciences, Novosibirsk, 630090Russia
  • Bulgarian Academy of Sciences (BG)
  • A N Bach Institute of Biochemistry (RU)
  • Jena University Hospital (DE)
  • Laboratory of Theoretical Chemistry, Department of Molecular Structure, A.V. Bogatsky Physical Chemical Institute National Academy of Sciences of Ukraine, Lustdorfskaya Doroga 86, Odessa65080, Ukraine
Venue
Future Medicinal Chemistry
Published
2010-07
Volume
2
Issue
7
Pages
1205-1226
ISSN
  • 1756-8919 (ISSN-L)
  • 1756-8927
OpenAlex
W2021389393
Cited by
64
References
92
Citations by year
2026: 2 · 2022: 3 · 2021: 3 · 2020: 11 · 2019: 7 · 2018: 6 · 2017: 5 · 2016: 5 · 2015: 4 · 2014: 4 · 2013: 5 · 2012: 4
FWCI
0.38
Type
journal article
Language
en
Open access
closed
Locations
  • Future Medicinal Chemistry (publishedVersion)
  • PubMed (publishedVersion)
Funders
President of Ukraine (GP/F11/0115)
Topics
  • Physical Sciences › Computer Science › Computational Theory and Mathematics › Computational Drug Discovery Methods
  • Physical Sciences › Mathematics › Geometry and Topology › Graph theory and applications
  • Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Advanced Chemical Physics Studies
Keywords
SIRM, antiviral agents, QSAR models, virtual screening, molecular design, antiviral drug discovery
MeSH terms
Animals, Antiviral Agents, Humans, Models, Biological, Models, Molecular, Virus Diseases, Drug Design, Quantitative Structure-Activity Relationship

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