The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
Probing the diversity of healthy oral microbiome with bioinformatics approaches
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“Similar to previous oral microbiome surveys [7, 29], we found high alpha (within sample) diversity (mean Shannon diversity 2.5, see Additional file 3) and low beta (between samples) diversity (mean weighted UniFrac distance 0.118).”
From Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition (2018) · cites this paper as [7]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C. R., Yu, W.-H., Lakshmanan, A., & Wade, W. G. (2010) · Journal of Bacteriology · doi:10.1128/jb.00542-10 · Cited by 3,352
A framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650
Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., & Dewhirst, F. E. (2010) · Database · doi:10.1093/database/baq013 · Cited by 1,162
A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
Huse, S. M., Ye, Y., Zhou, Y., & Fodor, A. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034242 · Cited by 572
Temporal variability is a personalized feature of the human microbiome
Flores, G. E., Caporaso, J. G., Henley, J. B., Rideout, J. R., Domogala, D., Chase, J., Leff, J. W., Vázquez-Baeza, Y., Gonzalez, A., Knight, R., et al. (2014) · Genome Biology · doi:10.1186/s13059-014-0531-y · Cited by 446
Advancements toward a systems level understanding of the human oral microbiome
McLean, J. S. (2014) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2014.00098 · Cited by 108
Bioinformatics for the Human Microbiome Project
Gevers, D., Pop, M., Schloss, P. D., & Huttenhower, C. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002779 · Cited by 91 · cited 2×
“to assemble contigs using an optimized SOAPdenovo protocol (8).”
BackgroundMethod
Research works printed but not linked: 92
- 2009, Genome Res, 19, 1141, 10.1101/gr.085464.108 · DOI
- 2007, Nature, 449, 804, 10.1038/nature06244 · DOI · Paper page
- 2012, Nutr Rev Suppl, 1, S38
- 2013, Pharmacol Res, 69, 137, 10.1016/j.phrs.2012.11.006 · DOI · Paper page
- 2012, Oral Dis, 18, 109, 10.1111/j.1601-0825.2011.01851.x · DOI
- 2015, Folia Microbiol (Praha), 60, 69, 10.1007/s12223-014-0342-2 · DOI · Paper page
- 2012, Genome Biol, 13, R42, 10.1186/gb-2012-13-6-r42 · DOI · Paper page
- 2012, Nature, 486, 207, 10.1038/nature11234 · DOI · Paper page
- 2013, PLoS One, 8, e63139, 10.1371/journal.pone.0063139 · DOI · Paper page
- 2013, Genome Biol, 14, R1, 10.1186/gb-2013-14-1-r1 · DOI
- 2014, Front Plant Sci, 5, 209
- 2015, Bioinform Biol Insights, 9, 75
- 1977, Proc Natl Acad Sci U S A, 74, 5088, 10.1073/pnas.74.11.5088 · DOI · Paper page
- 2013, PLoS One, 8, e53608, 10.1371/journal.pone.0053608 · DOI
- 2007, Appl Environ Microbiol, 73, 5261, 10.1128/AEM.00062-07 · DOI
- 2008, PLoS Genet, 4, e1000255, 10.1371/journal.pgen.1000255 · DOI
- 2008, Nucleic Acids Res, 36, e120, 10.1093/nar/gkn491 · DOI
- 2010, World J Gastroenterol, 16, 4135, 10.3748/wjg.v16.i33.4135 · DOI
- 2010, Nucleic Acids Res, 38, e200, 10.1093/nar/gkq873 · DOI
- 2015, Front Microbiol, 6, 771
- 2006, J Comput Biol, 13, 1028, 10.1089/cmb.2006.13.1028 · DOI
- 2010, Nat Methods, 7, 335, 10.1038/nmeth.f.303 · DOI · Paper page
- 2009, Appl Environ Microbiol, 75, 7537, 10.1128/AEM.01541-09 · DOI
- 2011, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381 · DOI · Paper page
- 2011, Appl Environ Microbiol, 77, 3219, 10.1128/AEM.02810-10 · DOI
- 1997, Nucleic Acids Res, 25, 3389, 10.1093/nar/25.17.3389 · DOI · Paper page
- 2010, Database (Oxford), 2010, baq013
- 2011, PLoS One, 6, e19051, 10.1371/journal.pone.0019051 · DOI
- 2012, Bioinformatics, 28, 3150, 10.1093/bioinformatics/bts565 · DOI · Paper page
- 2010, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461 · DOI
- 2005, Appl Environ Microbiol, 71, 1501, 10.1128/AEM.71.3.1501-1506.2005 · DOI
- 2013, Nucleic Acids Res, 42, 633
- 2010, Bioinformatics, 26, 2235, 10.1093/bioinformatics/btq349 · DOI
- 2015, Mol Oral Microbiol, 30, 227, 10.1111/omi.12086 · DOI
- 2005, Appl Environ Microbiol, 71, 8228, 10.1128/AEM.71.12.8228-8235.2005 · DOI · Paper page
- 2009, Bioinformatics, 25, 1754, 10.1093/bioinformatics/btp324 · DOI · Paper page
- 2012, Nat Methods, 9, 357, 10.1038/nmeth.1923 · DOI · Paper page
- 2014, Methods, 79-80, 52
- 2008, Genome Res, 18, 821, 10.1101/gr.074492.107 · DOI
- 2009, Genome Res, 19, 1117, 10.1101/gr.089532.108 · DOI
- 2012, Gigascience, 1, 18, 10.1186/2047-217X-1-18 · DOI
- 2011, Bioinformatics, 27, i94, 10.1093/bioinformatics/btr216 · DOI
- 2015, DNA Res, 22, 69, 10.1093/dnares/dsu041 · DOI
- 2012, Bioinformatics, 28, 1420, 10.1093/bioinformatics/bts174 · DOI
- 2010, Nucleic Acids Res, 38, e132, 10.1093/nar/gkq275 · DOI
- 2012, Bioinformatics, 28, 2223, 10.1093/bioinformatics/bts429 · DOI
- 2012, Nucleic Acids Res, 40, e9, 10.1093/nar/gkr1067 · DOI
- 2010, Nucleic Acids Res, 38, e191, 10.1093/nar/gkq747 · DOI
- 2012, BMC Bioinformatics, 13, 183, 10.1186/1471-2105-13-183 · DOI
- 2011, BMC Bioinformatics, 12, 20, 10.1186/1471-2105-12-20 · DOI
- 2015, Nucleic Acids Res, 44, D279
- 2014, Nucleic Acids Res, 42, D568, 10.1093/nar/gkt919 · DOI
- 2000, Nucleic Acids Res, 28, 33, 10.1093/nar/28.1.33 · DOI
- 2014, Nucleic Acids Res, 42, D617, 10.1093/nar/gkt1078 · DOI
- 2000, Nucleic Acids Res, 28, 27, 10.1093/nar/28.1.27 · DOI · Paper page
- 2016, Nucleic Acids Res, 44, D286, 10.1093/nar/gkv1248 · DOI
- 2009, PLoS Comput Biol, 5, e1000465, 10.1371/journal.pcbi.1000465 · DOI
- 2012, PLoS Comput Biol, 8, e1002358, 10.1371/journal.pcbi.1002358 · DOI
- 2016, Methods Mol Biol, 1399, 207, 10.1007/978-1-4939-3369-3_13 · DOI
- 1998, Microbiol Mol Biol Rev, 62, 71, 10.1128/MMBR.62.1.71-109.1998 · DOI
- 2014, Front Microbiol, 5, 508
- 2009, Eur J Clin Microbiol Infect Dis, 28, 1033, 10.1007/s10096-009-0743-3 · DOI
- 2014, MBio, 1, e00129
- 2015, Microbiome, 3, 52, 10.1186/s40168-015-0117-2 · DOI
- 2009, Genome Res, 19, 636, 10.1101/gr.084616.108 · DOI
- 2011, PLoS One, 6, e23352, 10.1371/journal.pone.0023352 · DOI
- 2014, BMC Microbiol, 14, 316, 10.1186/s12866-014-0316-1 · DOI
- 2013, PLoS One, 8, e77287, 10.1371/journal.pone.0077287 · DOI
- 2008, J Clin Periodontol, 35, 346
- 2004, J Clin Periodontol, 31, 996, 10.1111/j.1600-051X.2004.00597.x · DOI
- 2009, Arch Oral Biol, 54, 223, 10.1016/j.archoralbio.2008.10.005 · DOI
- 2007, Curr Med Chem, 14, 1409, 10.2174/092986707780831131 · DOI
- 2004, Obstetrics and Gynecology, 104, 293, 10.1097/01.AOG.0000133486.85400.5e · DOI
- 1970, Arch Oral Biol, 15, 1101, 10.1016/0003-9969(70)90123-8 · DOI
- 1971, J Dent Res, 50, 1353, 10.1177/00220345710500054501 · DOI
- 2014, Front Cell Infect Microbiol, 4, 85
- 2010, Proc Natl Acad Sci U S A, 107, 11971, 10.1073/pnas.1002601107 · DOI · Paper page
- 2011, J Dent Res, 90, 1183, 10.1177/0022034511418973 · DOI
- 2013, J Pediatr Gastroenterol Nutr, 56, 127, 10.1097/MPG.0b013e31826f2bc6 · DOI
- 2013, BMC Microbiol, 13, 193, 10.1186/1471-2180-13-193 · DOI
- 2012, Genome Res, 22, 2146, 10.1101/gr.140608.112 · DOI · Paper page
- 2010, BMC Genomics, 11, 523, 10.1186/1471-2164-11-523 · DOI
- 2015, Environ Microbiol, 17, 699, 10.1111/1462-2920.12502 · DOI · Paper page
- 2011, PLoS One, 6, e23503, 10.1371/journal.pone.0023503 · DOI
- 2011, BMC Med Genomics, 4, 22, 10.1186/1755-8794-4-22 · DOI
- 2014, Front Cell Infect Microbiol, 4, 98
- 2014, Nat Rev Genet, 15, 577
- 2014, ISME J, 8, 2546, 10.1038/ismej.2014.92 · DOI
- 2016, Curr Opin Microbiol, 31, 217, 10.1016/j.mib.2016.04.020 · DOI
- 2012, Int J Syst Evol Microbiol, 62, 716, 10.1099/ijs.0.038075-0 · DOI
- 2013, Nucleic Acids Res, 41, D590, 10.1093/nar/gks1219 · DOI · Paper page
- 2006, Appl Environ Microbiol, 72, 5069, 10.1128/AEM.03006-05 · DOI · Paper page
Cited by
Sorted by citations
Oral microbiome: Unveiling the fundamentals
Deo, P., & Deshmukh, R. (2019) · Journal of Oral and Maxillofacial Pathology · doi:10.4103/jomfp.jomfp_304_18 · Cited by 1,121
Willis, J. R., González-Torres, P., Pittis, A. A., Bejarano, L. A., Cozzuto, L., Andreu-Somavilla, N., Alloza-Trabado, M., Valentín, A., Ksiezopolska, E., Company, C., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0592-3 · Cited by 158
Metadata
- Authors
- Moon, J.-H., & Lee, J.-H.
- Venue
- BMB Reports
- Published
- 2016-12-31
- Volume
- 49
- Issue
- 12
- Pages
- 662-670
- ISSN
- 1976-6696
- PMC
- PMC5346311
- Cited by
- 53
- References
- 7
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review