Hogenesch, John B.

A gene atlas of the mouse and human protein-encoding transcriptomes

Su, A. I., Wiltshire, T., Batalov, S., Lapp, H., Ching, K. A., Block, D., Zhang, J., Soden, R., Hayakawa, M., Kreiman, G., et al. (2004) · Proceedings of the National Academy of Sciences

Gene expression and cancer classificationGenomics and Chromatin Dynamics

Cited by 3,475

A circadian gene expression atlas in mammals: Implications for biology and medicine

Zhang, R., Lahens, N. F., Ballance, H. I., Hughes, M. E., & Hogenesch, J. B. (2014) · Proceedings of the National Academy of Sciences

Circadian rhythm and melatoninSleep and Work-Related Fatigue

Cited by 2,304

Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock

Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H.-S., Han, B., Zhu, T., Wang, X., Kreps, J. A., & Kay, S. A. (2000) · Science

Plant Molecular Biology ResearchCircadian rhythm and melatonin

Cited by 1,640

Mop3 is an essential component of the master circadian pacemaker in mammals.

Bunger, M. K., Wilsbacher, L. D., Moran, S. M., Clendenin, C., Radcliffe, L. A., Hogenesch, J. B., Simon, M. C., Takahashi, J. S., & Bradfield, C. A. (2000) · Cell

Circadian rhythm and melatoninSleep and Wakefulness Research

Cited by 1,621

Large-scale analysis of the human and mouse transcriptomes

Su, A. I., Cooke, M. P., Ching, K. A., Hakak, Y., Walker, J. R., Wiltshire, T., Orth, A. P., Vega, R. G., Sapinoso, L. M., Moqrich, A., et al. (2002) · Proceedings of the National Academy of Sciences

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 1,466

BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis

Rudic, R. D., McNamara, P., Curtis, A.-M., Boston, R. C., Panda, S., Hogenesch, J. B., & FitzGerald, G. A. (2004) · PLoS Biology

Circadian rhythm and melatoninPancreatic function and diabetes

Cited by 1,059

Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues

Zhang, X., Odom, D. T., Koo, S.-H., Conkright, M. D., Canettieri, G., Best, J., Chen, H., Jenner, R., Herbolsheimer, E., Jacobsen, E., et al. (2005) · Proceedings of the National Academy of Sciences

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 992

Urocortin II: A Member of the Corticotropin-Releasing Factor (CRF) Neuropeptide Family that Is Selectively Bound by Type 2 CRF Receptors

Reyes, T. M., Lewis, K., Perrin, M. H., Kunitake, K. S., Vaughan, J., Arias, C. A., Hogenesch, J. B., Gulyas, J., Rivier, J., Vale, W. W., et al. (2001) · Proceedings of the National Academy of Sciences

Neuropeptides and Animal PhysiologyStress Responses and Cortisol

Cited by 887

Melanopsin ( Opn4 ) Requirement for Normal Light-Induced Circadian Phase Shifting

Panda, S., Sato, T. K., Castrucci, A. M., Rollag, M. D., DeGrip, W. J., Hogenesch, J. B., Provencio, I., & Kay, S. A. (2002) · Science

Circadian rhythm and melatoninLight effects on plants

Cited by 861

Melanopsin is required for non-image-forming photic responses in blind mice

Panda, S., Provencio, I., Tu, D. C., Pires, S. S., Rollag, M. D., Castrucci, A. M., Pletcher, M. T., Sato, T. K., Wiltshire, T., Andahazy, M., et al. (2003) · Science

Circadian rhythm and melatoninRetinal Development and Disorders

Cited by 711

Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration

Musiek, E. S., Lim, M. M., Yang, G., Bauer, A. Q., Qi, L., Lee, Y., Roh, J. H., Ortiz-Gonzalez, X., Dearborn, J. T., Culver, J. P., et al. (2013) · Journal of Clinical Investigation

Circadian rhythm and melatoninNeuroinflammation and Neurodegeneration Mechanisms

Cited by 524

A new view of transcriptome complexity and regulation through the lens of local splicing variations

Vaquero-Garcia, J., Barrera, A., Gazzara, M. R., González-Vallinas, J., Lahens, N. F., Hogenesch, J. B., Lynch, K. W., & Barash, Y. (2016) · eLife

RNA Research and SplicingRNA regulation and disease

Cited by 488

CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function

Andrews, J. L., Zhang, X., McCarthy, J. J., McDearmon, E. L., Hornberger, T. A., Russell, B., Campbell, K. S., Arbogast, S., Reid, M. B., Walker, J. R., et al. (2010) · Proceedings of the National Academy of Sciences

Circadian rhythm and melatoninMuscle Physiology and Disorders

Cited by 389

Mammalian Per-Arnt-Sim Proteins in Environmental Adaptation

McIntosh, B. E., Hogenesch, J. B., & Bradfield, C. A. (2010) · Annual Review of Physiology

Circadian rhythm and melatoninNuclear Receptors and Signaling

Cited by 352

Extensive Variation in Chromatin States Across Humans

Kasowski, M., Kyriazopoulou-Panagiotopoulou, S., Grubert, F., Zaugg, J. B., Kundaje, A., Liu, Y., Boyle, A. P., Zhang, Q. C., Zakharia, F., Spacek, D. V., et al. (2013) · Science

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

Cited by 339

A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine

Ruben, M. D., Wu, G., Smith, D. F., Schmidt, R. E., Francey, L. J., Lee, Y. Y., Anafi, R. C., & Hogenesch, J. B. (2018) · Science Translational Medicine

Circadian rhythm and melatoninGene expression and cancer classification

Cited by 314

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

Love, M. I., Hogenesch, J. B., & Irizarry, R. A. (2016) · Nature Biotechnology

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 186

IVT-seq reveals extreme bias in RNA sequencing

Lahens, N. F., Kavakli, I. H., Zhang, R., Hayer, K., Black, M. B., Dueck, H., Pizarro, A., Kim, J., Irizarry, R., Thomas, R. S., et al. (2014) · Genome Biology

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 158

Bioinformatic Analysis of Circadian Gene Oscillation in Mouse Aorta

Rudic, R. D., McNamara, P., Reilly, D., Grosser, T., Curtis, A.-M., Price, T. S., Panda, S., Hogenesch, J. B., & FitzGerald, G. A. (2005) · Circulation

Circadian rhythm and melatoninCardiac electrophysiology and arrhythmias

Cited by 157

Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive

Olarerin-George, A. O., & Hogenesch, J. B. (2015) · Nucleic Acids Research

Microbial infections and disease researchGenomics and Phylogenetic Studies

Cited by 121

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

Hayer, K. E., Pizarro, A., Lahens, N. F., Hogenesch, J. B., & Grant, G. R. (2015) · Bioinformatics

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 93

Circadian Medicine Education: The Time Has Arrived

de la Iglesia, H. O., & Hogenesch, J. B. (2024) · Journal of Biological Rhythms

Circadian rhythm and melatoninInnovations in Medical Education

Cited by 6