Greninger, Alexander L.

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

Greninger, A. L., Naccache, S. N., Federman, S., Yu, G., Mbala, P., Bres, V., Stryke, D., Bouquet, J., Somasekar, S., Linnen, J. M., et al. (2015) · Genome Medicine

Genomics and Phylogenetic StudiesViral Infections and Outbreaks Research

Cited by 558

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with a high attack rate

Addetia, A., Crawford, K. H. D., Dingens, A., Zhu, H., Roychoudhury, P., Huang, M.-L., Jerome, K. R., Bloom, J. D., & Greninger, A. L. (2020) · Journal of Clinical Microbiology

SARS-CoV-2 and COVID-19 ResearchCOVID-19 Clinical Research Studies

Cited by 525

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

Naccache, S. N., Federman, S., Veeraraghavan, N., Zaharia, M., Lee, D., Samayoa, E., Bouquet, J., Greninger, A. L., Luk, K.-C., Enge, B., et al. (2014) · Genome Research

Genomics and Phylogenetic StudiesBacterial Identification and Susceptibility Testing

Cited by 460

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

Joung, J., Ladha, A., Saito, M., Segel, M., Bruneau, R., Huang, M.-L. W., Kim, N.-G., Yu, X., Li, J., Walker, B. D., et al. (2020) · medRxiv

SARS-CoV-2 detection and testingBiosensors and Analytical Detection

Cited by 317

Dynamics of Neutralizing Antibody Titers in the Months After Severe Acute Respiratory Syndrome Coronavirus 2 Infection

Crawford, K. H. D., Dingens, A. S., Eguia, R., Wolf, C. R., Wilcox, N., Logue, J. K., Shuey, K., Casto, A. M., Fiala, B., Wrenn, S., et al. (2021) · The Journal of Infectious Diseases

SARS-CoV-2 and COVID-19 ResearchCOVID-19 Clinical Research Studies

Cited by 265

A human coronavirus evolves antigenically to escape antibody immunity

Eguia, R., Crawford, K. H. D., Stevens-Ayers, T., Kelnhofer-Millevolte, L., Greninger, A. L., Englund, J. A., Boeckh, M. J., & Bloom, J. D. (2020) · PLoS Pathogens

SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections Studies

Cited by 258

A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America

Greninger, A. L., Chen, E. C., Sittler, T., Scheinerman, A., Roubinian, N., Yu, G., Kim, E., Pillai, D. R., Guyard, C., Mazzulli, T., et al. (2010) · PLoS ONE

Influenza Virus Research StudiesGenomics and Phylogenetic Studies

Cited by 193

The challenge of diagnostic metagenomics

Greninger, A. L. (2018) · Expert Review of Molecular Diagnostics

Bacterial Identification and Susceptibility TestingGenomics and Phylogenetic Studies

Cited by 156

Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization.

Peddu, V., Shean, R. C., Xie, H., Shrestha, L., Perchetti, G. A., Minot, S. S., Roychoudhury, P., Huang, M.-L., Nalla, A., Reddy, S. B., et al. (2020) · Clinical Chemistry

SARS-CoV-2 detection and testingSARS-CoV-2 and COVID-19 Research

Cited by 73

Pathogen or Bystander: Clinical Significance of Detecting Human Herpesvirus 6 in Pediatric Cerebrospinal Fluid

Pandey, U., Greninger, A. L., Levin, G. R., Jerome, K. R., Anand, V. C., & Dien Bard, J. (2020) · Journal of Clinical Microbiology

Cytomegalovirus and herpesvirus researchHerpesvirus Infections and Treatments

Cited by 61

Inherited Chromosomally Integrated Human Herpesvirus 6 Demonstrates Tissue-Specific RNA Expression In Vivo That Correlates with an Increased Antibody Immune Response

Peddu, V., Dubuc, I., Gravel, A., Xie, H., Huang, M.-L., Tenenbaum, D., Jerome, K. R., Tardif, J.-C., Dubé, M.-P., Flamand, L., et al. (2019) · Journal of Virology

Cytomegalovirus and herpesvirus researchViral-associated cancers and disorders

Cited by 39

The Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing

Greninger, A. L., Naccache, S. N., Pannaraj, P., Jerome, K. R., Dien Bard, J., & Ruderman, J. W. (2019) · Journal of Clinical Microbiology

Cytomegalovirus and herpesvirus researchViral-associated cancers and disorders

Cited by 13

High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny

Lieberman, N. A., Armstrong, T. D., Chung, B., Pfalmer, D., Hennelly, C. M., Haynes, A., Romeis, E., Wang, Q.-Q., Zhang, R.-L., Kou, C.-X., et al. (2022) · Frontiers in Microbiology

Syphilis Diagnosis and TreatmentGenomics and Phylogenetic Studies

Cited by 10

High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny

Lieberman, N. A. P., Armstrong, T. D., Chung, B., Pfalmer, D., Hennelly, C. M., Haynes, A., Romeis, E., Wang, Q.-Q., Zhang, R.-L., Kou, C.-X., et al. (2022) · Frontiers in Microbiology

Syphilis Diagnosis and TreatmentGenomics and Phylogenetic Studies

Cited by 10

Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of small-colony variant Enterobactericeae

Greninger, A. L., Addetia, A., Tao, Y., Adler, A., & Qin, X. (2019) · Scientific Reports

Bacterial Genetics and BiotechnologyEscherichia coli research studies

Cited by 8

Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of Small colony variant Enterobacteriaceae

Greninger, A. L., Addetia, A., Tao, Y., Adler, A., & Qin, X. (2021) · Scientific Reports

Bacterial Genetics and BiotechnologyEscherichia coli research studies

Cited by 8