Eisen, Michael B.

Cluster analysis and display of genome-wide expression patterns

Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 16,184

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., et al. (2000) · Nature

Lymphoma Diagnosis and TreatmentBreast Cancer Treatment Studies

Cited by 9,925

Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes

Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D., & Brown, P. O. (2000) · Molecular Biology of the Cell

Fungal and yeast genetics researchBacterial Genetics and Biotechnology

Cited by 4,815

Systematic variation in gene expression patterns in human cancer cell lines

Ross, D. T., Scherf, U., Eisen, M. B., Perou, C. M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S. S., Van de Rijn, M., Waltham, M., et al. (2000) · Nature Genetics

Gene expression and cancer classificationBreast Cancer Treatment Studies

Cited by 2,088

In vivo enhancer analysis of human conserved non-coding sequences

Pennacchio, L. A., Ahituv, N., Moses, A. M., Prabhakar, S., Nobrega, M. A., Shoukry, M., Minovitsky, S., Dubchak, I., Holt, A., Lewis, K. D., et al. (2006) · Nature

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 1,165

'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns

Hastie, T., Tibshirani, R., Eisen, M. B., Alizadeh, A., Levy, R., Staudt, L., Chan, W. C., Botstein, D., & Brown, P. (2000) · Genome Biology

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 547

Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray

Johannes, G., Carter, M. S., Eisen, M. B., Brown, P. O., & Sarnow, P. (1999) · Proceedings of the National Academy of Sciences

RNA and protein synthesis mechanismsRNA Research and Splicing

Cited by 394

Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

Harrison, M. M., Li, X.-Y., Kaplan, T., Botchan, M. R., & Eisen, M. B. (2011) · PLoS Genetics

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 338

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

Hare, E. E., Peterson, B. K., Iyer, V. N., Meier, R., & Eisen, M. B. (2008) · PLoS Genetics

Genomics and Chromatin DynamicsDevelopmental Biology and Gene Regulation

Cited by 302

The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

Li, X.-Y., Thomas, S., Sabo, P. J., Eisen, M. B., Stamatoyannopoulos, J. A., & Biggin, M. D. (2011) · Genome Biology

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 217

Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos

Mir, M., Stadler, M. R., Ortiz, S. A., Hannon, C. E., Harrison, M. M., Darzacq, X., & Eisen, M. B. (2018) · eLife

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 207

Dense Bicoid hubs accentuate binding along the morphogen gradient

Mir, M., Reimer, A., Haines, J. E., Li, X.-Y., Stadler, M., Garcia, H., Eisen, M. B., & Darzacq, X. (2017) · Genes & Development

Developmental Biology and Gene RegulationGenomics and Chromatin Dynamics

Cited by 192

Aging and Gene Expression in the Primate Brain

Fraser, H. B., Khaitovich, P., Plotkin, J. B., Pääbo, S., & Eisen, M. B. (2005) · PLoS Biology

Genetics, Aging, and Longevity in Model OrganismsSingle-cell and spatial transcriptomics

Cited by 172

Control of embryonic stem cell lineage commitment by core promoter factor, TAF3

Liu, Z., Scannell, D. R., Eisen, M. B., & Tjian, R. (2011) · Cell

Genomics and Chromatin DynamicsPluripotent Stem Cells Research

Cited by 167

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

Moses, A. M., Chiang, D. Y., Pollard, D. A., Iyer, V. N., & Eisen, M. B. (2004) · Genome Biology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 153

Genome-wide Analysis of Alternative Pre-mRNA Splicing and RNA-Binding Specificities of the Drosophila hnRNP A/B Family Members

Blanchette, M., Green, R. E., MacArthur, S., Brooks, A. N., Brenner, S. E., Eisen, M. B., & Rio, D. C. (2009) · Molecular Cell

RNA Research and SplicingRNA regulation and disease

Cited by 86