Holmes, Edward C.

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

Lu, R., Zhao, X., Li, J., Niu, P., Yang, B., Wu, H., Wang, W., Song, H., Huang, B., Zhu, N., et al. (2020) · The Lancet

SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections Studies

Cited by 11,907

A new coronavirus associated with human respiratory disease in China

Wu, F., Zhao, S., Yu, B., Chen, Y.-M., Wang, W., Song, Z.-G., Hu, Y., Tao, Z.-W., Tian, J.-H., Pei, Y.-Y., et al. (2020) · Nature

SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections Studies

Cited by 11,688

The proximal origin of SARS-CoV-2

Andersen, K. G., Rambaut, A., Lipkin, W. I., Holmes, E. C., & Garry, R. F. (2020) · Nature Medicine

SARS-CoV-2 and COVID-19 ResearchAnimal Virus Infections Studies

Cited by 5,081

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

Rambaut, A., Holmes, E. C., O’Toole, Á., Hill, V., McCrone, J. T., Ruis, C., du Plessis, L., & Pybus, O. G. (2020) · Nature Microbiology

SARS-CoV-2 and COVID-19 ResearchGenomics and Phylogenetic Studies

Cited by 2,543

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

Parrish, C. R., Holmes, E. C., Morens, D. M., Park, E.-C., Burke, D. S., Calisher, C. H., Laughlin, C. A., Saif, L. J., & Daszak, P. (2008) · Microbiology and Molecular Biology Reviews

Zoonotic diseases and public healthViral Infections and Outbreaks Research

Cited by 834

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

Faria, N. R., Quick, J., Claro, I. M., Thézé, J., de Jesus, J. G., Giovanetti, M., Kraemer, M. U. G., Hill, S. C., Black, A., da Costa, A. C., et al. (2017) · Nature

Mosquito-borne diseases and controlViral Infections and Vectors

Cited by 616

Evolutionary aspects of recombination in RNA viruses

Worobey, M., & Holmes, E. C. (1999) · Journal of General Virology

Evolution and Genetic DynamicsVirology and Viral Diseases

Cited by 556

Off-season RSV epidemics in Australia after easing of COVID-19 restrictions

Eden, J.-S., Sikazwe, C., Xie, R., Deng, Y.-M., Sullivan, S. G., Michie, A., Levy, A., Cutmore, E., Blyth, C. C., Britton, P. N., et al. (2022) · Nature Communications

Respiratory viral infections researchSARS-CoV-2 and COVID-19 Research

Cited by 340

The evolution of Ebola virus: Insights from the 2013-2016 epidemic

Holmes, E. C., Dudas, G., Rambaut, A., & Andersen, K. G. (2016) · Nature

Viral Infections and Outbreaks ResearchViral Infections and Vectors

Cited by 314

Comparative Analysis Estimates the Relative Frequencies of Co-Divergence and Cross-Species Transmission within Viral Families

Geoghegan, J. L., Duchêne, S., & Holmes, E. C. (2017) · PLOS Pathogens

Zoonotic diseases and public healthEvolution and Genetic Dynamics

Cited by 275

Inferring the Rate and Time-Scale of Dengue Virus Evolution

Twiddy, S. S., Holmes, E. C., & Rambaut, A. (2003) · Molecular Biology and Evolution

Mosquito-borne diseases and controlEvolution and Genetic Dynamics

Cited by 269

Predicting virus emergence amid evolutionary noise

Geoghegan, J. L., & Holmes, E. C. (2017) · Open Biology

Zoonotic diseases and public healthEvolution and Genetic Dynamics

Cited by 209

Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus

Holmes, E. C. (2003) · Journal of Virology

Evolution and Genetic DynamicsMosquito-borne diseases and control

Cited by 196

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2

O'Toole, Á., Hill, V., Pybus, O. G., Watts, A., Bogoch, I. I., Khan, K., Messina, J. P., The COVID-19 Genomics UK (COG-UK) consortium, Network for Genomic Surveillance in South Africa (NGS-SA), Brazil-UK CADDE Genomic Network, et al. (2021) · Wellcome Open Research

SARS-CoV-2 and COVID-19 ResearchCOVID-19 epidemiological studies

Cited by 192

Using artificial intelligence to document the hidden RNA virosphere

Hou, X., He, Y., Fang, P., Mei, S.-Q., Xu, Z., Wu, W.-C., Tian, J.-H., Zhang, S., Zeng, Z.-Y., Gou, Q.-Y., et al. (2024) · Cell

Bacteriophages and microbial interactionsGenomics and Phylogenetic Studies

Cited by 162

Using artificial intelligence to document the hidden RNA virosphere

Hou, X., He, Y., Fang, P., Mei, S.-Q., Xu, Z., Wu, W.-C., Tian, J.-H., Zhang, S., Zeng, Z.-Y., Gou, Q.-Y., et al. (2023) · Cell

Bacteriophages and microbial interactionsGenomics and Phylogenetic Studies

Cited by 162

Virological factors that increase the transmissibility of emerging human viruses

Geoghegan, J. L., Senior, A. M., Di Giallonardo, F., & Holmes, E. C. (2016) · Proceedings of the National Academy of Sciences

Zoonotic diseases and public healthViral Infections and Outbreaks Research

Cited by 155

Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution

Pybus, O. G., Rambaut, A., Belshaw, R., Freckleton, R. P., Drummond, A. J., & Holmes, E. C. (2007) · Molecular Biology and Evolution

Evolution and Genetic DynamicsRNA and protein synthesis mechanisms

Cited by 140

Rabbit Hemorrhagic Disease Virus 2 (RHDV2; GI.2) Is Replacing Endemic Strains of RHDV in the Australian Landscape within 18 Months of Its Arrival

Mahar, J. E., Hall, R. N., Peacock, D., Kovaliski, J., Piper, M., Mourant, R., Huang, N., Campbell, S., Gu, X., Read, A., et al. (2018) · Journal of Virology

Animal Virus Infections StudiesAnimal Disease Management and Epidemiology

Cited by 122

RdRp-scan: A Bioinformatic Resource to Identify and Annotate Divergent RNA Viruses in Metagenomic Sequence Data

Charon, J., Buchmann, J. P., Sadiq, S., & Holmes, E. C. (2022) · Virus Evolution

Genomics and Phylogenetic StudiesBacteriophages and microbial interactions

Cited by 108

Emerging Rabbit Hemorrhagic Disease Virus 2 (RHDVb), Australia

Hall, R. N., Mahar, J. E., Haboury, S., Stevens, V., Holmes, E. C., & Strive, T. (2015) · Emerging Infectious Diseases

Mosquito-borne diseases and controlViral Infections and Vectors

Cited by 93

Fecal Viral Diversity of Captive and Wild Tasmanian Devils Characterized Using Virion-Enriched Metagenomics and Metatranscriptomics

Chong, R., Shi, M., Grueber, C. E., Holmes, E. C., Hogg, C. J., Belov, K., & Barrs, V. R. (2019) · Journal of Virology

Animal Virus Infections StudiesBacteriophages and microbial interactions

Cited by 77

Facemask against viral respiratory infections among Hajj pilgrims: a challenging cluster-randomized trial

Alfelali, M., Haworth, E. A., Barasheed, O., Badahdah, A.-M., Bokhary, H., Tashani, M., Azeem, M. I., Kok, J., Taylor, J., Barnes, E. H., et al. (2020) · PLOS ONE

Travel-related health issuesInfection Control and Ventilation

Cited by 55

Red fox viromes in urban and rural landscapes

Campbell, S. J., Ashley, W., Gil-Fernandez, M., Newsome, T. M., Di Giallonardo, F., Ortiz-Baez, A. S., Mahar, J. E., Towerton, A. L., Gillings, M., Holmes, E. C., et al. (2020) · Virus Evolution

Zoonotic diseases and public healthAnimal Virus Infections Studies

Cited by 47