DNA Micro-Disks for the Management of DNA-Based Data Storage with Index and Write-Once-Read-Many (WORM) Memory Features.
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Abstract
DNA-based data storage has attracted attention because of its higher physical density of the data and longer retention time than those of conventional digital data storage. However, previous DNA-based data storage lacked index features and the data quality of storage after a single access was not preserved, obstructing its industrial use. Here, DNA micro-disks, QR-coded micro-sized disks that harbor data-encoded DNA molecules for the efficient management of DNA-based data storage, are proposed. The two major features that previous DNA-based data-storage studies could not achieve are demonstrated. One feature is accessing data items efficiently by indexing the data-encoded DNA library. Another is achieving write-once-read-many (WORM) memory through the immobilization of DNA molecules on the disk and their enrichment through in situ DNA production. Through these features, the reliability of DNA-based data storage is increased by allowing selective and multiple accession of data-encoded DNA with lower data loss than previous DNA-based data storage methods.
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A DNA micro-disks concept was proposed for efficient management of DNA-based data storage by QR-coded micro-sized disks carrying data-encoded DNA molecules.
“Choi et al. (2020) proposed DNA micro-disks concept for the efficient management of DNA-based data storage by QR-coded micro-sized disks carrying data-encoded DNA molecules.”
From Large-Scale de Novo Oligonucleotide Synthesis for Whole-Genome Synthesis and Data Storage: Challenges and Opportunities (2021) · cites this paper as Choi et al., 2020
With multiple-sequencing results, some random errors can be eliminated based on plurality voting to improve sequencing accuracy.
“With the multiple-sequencing results, some random errors can be eliminated on the basis of the principle of plurality voting to improve the sequencing accuracy (Fig. 4, C and D) (51, 52).”
From Electrochemical DNA synthesis and sequencing on a single electrode with scalability for integrated data storage (2021) · cites this paper as [51]
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Gimpel, A. L., Fan, B., Chen, D., Wölfle, L. O. D., Horn, M., Meng-Papaxanthos, L., Antkowiak, P. L., Stark, W. J., Christen, B., Borgwardt, K. M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.09.20.614030 · Cited by 2 · see citing works
TransDNA: A Deep Transfer Learning Network for Sequence Reconstruction in DNA-Based Data Storage
Qin, Y., Zhu, F., Xi, B., & Duan, Y. (2025) · IEEE Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbbio.2025.3602912 · Cited by 1 · see citing works
Highly Parallel Oligonucleotide Libraries Purification
Choi, H. (2022) · Springer theses · doi:10.1007/978-981-19-4274-7_3
Self-citationJeong, B., Han, J., Noh, T., & Yoon, T. (2023) · ACS Applied Electronic Materials · doi:10.1021/acsaelm.3c00473
Light-guided molecular patterning for programmable multiplexed single-molecule manipulationPreprint
Choi, H., Ward, A. R., & Wong, W. P. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.04.30.651527
Self-citationPrimer‐Disk‐Enabled DNA Data Storage System with Index and Record‐Many‐Read‐Many Features
Ma, J., Yu, Y., Pei, B., Mi, S., Xiong, Z., & Ouyang, L. (2025) · Advanced Science · doi:10.1002/advs.202502367
Structure-based DNA memory with Boolean random access
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Light‐Guided Molecular Patterning for High‐Throughput Single‐Molecule Mechanical Characterization
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Self-citationRIDE: Random interleaving data encoding method for enhancing DNA storage efficiency
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Fluorescence-Only Readable Micro-QR Codes Achieved by Hydrogel Encapsulation
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Self-citationProgrammable one-pot polymerase-mediated DNA synthesis via temperature control
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State of the Art on DNA Storage Technologies and Their Performance Evaluation
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Molecular access control for random-access DNA data storagePreprint
Bögels, B. W. A., Vermathen, R. T., Yurchenko, A., Takahashi, C. N., Markvoort, A. J., & de Greef, T. F. A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.08.12.744375
- Authors
- Choi, Y., Bae, H. J., Lee, A. C., Choi, H., Lee, D., Ryu, T., Hyun, J., Kim, S., Kim, H., Song, S., Kim, K., Park, W., & Kwon, S.
- Affiliations
- Seoul National University (KR)
- Celemics Inc., 131 Gasandigital 1‐ro, Geumcheon‐gu Seoul 08506 Republic of Korea
- Kyung Hee University (KR)
- Corresponding author
- Park, Wook
- Kwon, Sunghoon
- ORCID
- Venue
- Advanced Materials
- Publisher
- Wiley
- Published
- 2020-07-29
- Volume
- 32
- Issue
- 37
- Pages
- e2001249-e2001249
- ISSN
- 0935-9648 (ISSN-L)
- 1521-4095
- OpenAlex
- W3045865059
- Cited by
- 77
- References
- 33
- Citations by year
- 2026: 11 · 2025: 16 · 2024: 14 · 2023: 11 · 2022: 12 · 2021: 12 · 2020: 1
- FWCI
- 2.92
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Locations
- Advanced Materials (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- Funders
- National Research Foundation of Korea
- National Science Foundation, United Arab Emirates
- Ministry of Education (NRF‐2019R1I1A1A01059874, NRF‐2020R1I1A1A01075042, NRF‐2020R1A3B3079653)
- Kyung Hee University (KHU‐20150801)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Biological Computing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Advanced biosensing and bioanalysis techniques
- Physical Sciences › Computer Science › Computer Networks and Communications › Advanced Data Storage Technologies
- Keywords
- DNA data storage, data indexing, DNA immobilization, data retrieval, data loss
- MeSH terms
- DNA, Information Storage and Retrieval, Computer Storage Devices
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