Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617 · see citing works

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,962 · see citing works

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

Felsenstein, J. (1985) · Evolution · doi:10.1111/j.1558-5646.1985.tb00420.x · Cited by 44,735 · see citing works

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

Kimura, M. (1980) · Journal of Molecular Evolution · doi:10.1007/bf01731581 · Cited by 29,778 · see citing works

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

Felsenstein, J. (1985) · Evolution · doi:10.2307/2408678 · Cited by 19,371 · see citing works

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

Muyzer, G., de Waal, E. C., & Uitterlinden, A. G. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.3.695-700.1993 · Cited by 11,379 · see citing works

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

Stackebrandt, E., & Goebel, B. M. (1994) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-44-4-846 · Cited by 7,156 · see citing works

THE POPULATION FREQUENCIES OF SPECIES AND THE ESTIMATION OF POPULATION PARAMETERS

Good, I. J. (1953) · Biometrika · doi:10.1093/biomet/40.3-4.237 · Cited by 3,427 · see citing works

The Rumen and Its Microbes

Hungate, R. E. (2013) · Elsevier eBooks · doi:10.1016/c2013-0-12555-x · Cited by 3,060 · see citing works

Fundamentals of Ecology

Stout, I. J., & Odum, E. P. (1972) · Journal of Wildlife Management · doi:10.2307/3799291 · Cited by 2,439 · see citing works

The Rumen Microbial Ecosystem

Hobson, P. N., & Stewart, C. S. (1997) · Springer eBooks · doi:10.1007/978-94-009-1453-7 · Cited by 2,146 · see citing works

Statistical Ecology: A Primer on Methods and Computing.

French, D. D., Ludwig, J. A., & Reynolds, J. F. (1989) · Journal of Applied Ecology · doi:10.2307/2403729 · Cited by 2,131 · see citing works

Molecular Microbial Ecology Manual

Microbioly, N. S. I. (1996) · Springer eBooks · doi:10.1007/978-94-009-0215-2 · Cited by 1,692 · see citing works

The rumen bacteria

Stewart, C. S., Flint, H. J., & Bryant, M. P. (1997) · The Rumen Microbial Ecosystem · doi:10.1007/978-94-009-1453-7_2 · Cited by 772 · see citing works

Rapid method for direct extraction of DNA from soil and sediments

Tsai, Y. L., & Olson, B. H. (1991) · Applied and Environmental Microbiology · doi:10.1128/aem.57.4.1070-1074.1991 · Cited by 622 · see citing works

[9] Applications of network BLAST server

Madden, T., Tatusov, R. L., & Zhang, J. (1996) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(96)66011-x · Cited by 412 · see citing works

Succiniclasticum ruminis gen. nov., sp. nov., a Ruminal Bacterium Converting Succinate to Propionate as the Sole Energy-Yielding Mechanism

Gylswyk, N. O. V. (1995) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-45-2-297 · Cited by 293 · see citing works

Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries

Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Nakamura, M., Matsui, H., & Benno, Y. (1999) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1999.tb00607.x · Cited by 291 · see citing works

Rumen Bacterial Community Transition During Adaptation to High-grain Diet

Tajima, K., Arai, S., Ogata, K., Nagamine, T., Matsui, H., Nakamura, M., Aminov, R. I., & Benno, Y. (2000) · Anaerobe · doi:10.1006/anae.2000.0353 · Cited by 280 · see citing works

Phylogenetic Analysis of Rumen Bacteria by Comparative Sequence Analysis of Cloned 16S rRNA Genesß

Whitford, M. F., Forster, R. J., Beard, C. E., Gong, J., & Teather, R. M. (1998) · Anaerobe · doi:10.1006/anae.1998.0155 · Cited by 256 · see citing works

BACTERIAL SPECIES OF THE RUMEN

Bryant, M. P. (1959) · Bacteriological Reviews · doi:10.1128/br.23.3.125-153.1959 · Cited by 220 · see citing works

Phenotypic Diversity among Ruminal Isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and Redefinition of Prevotella ruminicola

Avguštin, G., WALLACE, R. J., & Flint, H. J. (1997) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-47-2-284 · Cited by 213 · see citing works

Development of, and natural fluctuations in, rumen microbial populations

Dehority, B. A., & Orpin, C. G. (1997) · Springer eBooks · doi:10.1007/978-94-009-1453-7_5 · Cited by 189 · see citing works

Genetics, biochemistry and ecology of cellulose degradation

大宮, 邦. (1999) · Medical Entomology and Zoology · Cited by 138 · see citing works

Interaction of ruminal bacteria in the production and utilization of maltooligosaccharides from starch

Cotta, M. A. (1992) · Applied and Environmental Microbiology · doi:10.1128/aem.58.1.48-54.1992 · Cited by 125 · see citing works

Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum

RamÅ¡ak, A., Peterka, M., Tajima, K., Martin, J. C., Wood, J., Johnston, M. E. A., Aminov, R. I., Flint, H. J., & AvguÅ¡tin, G. (2000) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2000.tb00728.x · Cited by 109 · see citing works

Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets

Gylswyk, N. O. V. (1990) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1990.tb03948.x · Cited by 102 · see citing works

Genetic Diversity and Phylogenetic Relationships among Strains of Prevotella (Bacteroides) ruminicola from the Rumen

Avguštin, G., Wright, F., & Flint, H. J. (1994) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-44-2-246 · Cited by 95 · see citing works

Bacteria, Fungi, and Protozoa of the Rumen

Hespell, R. B., Akin, D. E., & Dehority, B. A. (1997) · Springer eBooks · doi:10.1007/978-1-4757-0322-1_3 · Cited by 93 · see citing works

Effects of microbial synergism on fibre digestion in the rumen

Dehority, B. A. (1991) · Proceedings of The Nutrition Society · doi:10.1079/pns19910026 · Cited by 71 · see citing works

Identification of proteolytic rumen bacteria isolated from New Zealand cattle

Attwood, G. T., & Reilly, K. (1995) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1995.tb03119.x · Cited by 59 · see citing works

The effects of corn milling coproducts on growth performance and diet digestibility by beef cattle.

Peter, C. M., Faulkner, D. B., Merchen, N. R., et al. (2000) · Journal of Animal Science · doi:10.2527/2000.7811 · Cited by 50 · see citing works

Three Cases of Anaerobiospirillum succiniciproducens Bacteremia Confirmed by 16S rRNA Gene Sequencing

Tee, W., Korman, T. M., Waters, M. J., et al. (1998) · Journal of Clinical Microbiology · doi:10.1128/jcm.36.5.1209-1213.1998 · Cited by 38 · see citing works

The proteolytic systems of ruminal microorganisms

Wallace, R. H. (1996) · Annales de Zootechnie · doi:10.1051/animres:19960653 · Cited by 28 · see citing works

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed

Sasson, G., Kruger Ben-Shabat, S., Seroussi, E., Doron-Faigenboim, A., Shterzer, N., Yaacoby, S., Berg Miller, M. E., White, B. A., Halperin, E., & Mizrahi, I. (2017) · mBio · doi:10.1128/mbio.00703-17 · Cited by 219 · see citing works

Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle

Hernandez-Sanabria, E., Goonewardene, L. A., Wang, Z., Durunna, O. N., Moore, S. S., & Guan, L. L. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.05114-11 · Cited by 207 · see citing works

Phytogenic Additives Can Modulate Rumen Microbiome to Mediate Fermentation Kinetics and Methanogenesis Through Exploiting Diet–Microbe Interaction

Hassan, F.-U., Arshad, M. A., Ebeid, H. M., Rehman, M. S.-U., Khan, M. S., Shahid, S., & Yang, C. (2020) · Frontiers in Veterinary Science · doi:10.3389/fvets.2020.575801 · Cited by 160 · see citing works

Comparative studies of microbial populations in the rumen, duodenum, ileum and faeces of lactating dairy cows

Frey, J. C., Pell, A. N., Berthiaume, R., Lapierre, H., Lee, S., Ha, J. K., Mendell, J. E., & Angert, E. R. (2009) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2009.04602.x · Cited by 111 · see citing works

Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium

Kenters, N., Henderson, G., Jeyanathan, J., Kittelmann, S., & Janssen, P. H. (2011) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2010.10.011 · Cited by 108 · see citing works

Quantifying Phylogenetic Beta Diversity: Distinguishing between ‘True’ Turnover of Lineages and Phylogenetic Diversity Gradients

Leprieur, F., Albouy, C. P., de Bortoli, J., Cowman, P. F., Bellwood, D. R., & Mouillot, D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042760 · Cited by 259 · see citing works

Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China

Hu, W., Zhang, Q., Li, D., Cheng, G., Mu, J., Wu, Q., Niu, F., An, L., & Feng, H. (2014) · Journal of Basic Microbiology · doi:10.1002/jobm.201400232 · Cited by 66 · see citing works

Cyanobacterial Diversity and Halotolerance in a Variable Hypersaline Environment

Kirkwood, A. E., Buchheim, J. A., Buchheim, M. A., et al. (2007) · Microbial Ecology · doi:10.1007/s00248-007-9291-5 · Cited by 67 · see citing works

A Dechlorinating Community Resulting From In Situ Biostimulation of a TCE-contaminated Deep Fracture Basalt Aquifer

Wood, T. K., & Cummings, D. E. (2004) · Applied and Environmental Microbiology

Assessment of the diversity and stability of faecal bacteria from healthy adults using molecular methods

Abell, G. C. J., & McOrist, A. L. (2007) · Microbial Ecology in Health and Disease · doi:10.1080/08910600701662248 · Cited by 15 · see citing works