In vivo probabilistic atlas of white matter tracts of the human subthalamic area combining track density imaging and optimized diffusion tractography
Open accessAbstract
The human subthalamic area is a region of high anatomical complexity, tightly packed with tiny fiber bundles. Some of them, including the pallidothalamic, cerebello-thalamic, and mammillothalamic tracts, are relevant targets in functional neurosurgery for various brain diseases. Diffusion-weighted imaging-based tractography has been suggested as a useful tool to map white matter pathways in the human brain in vivo and non-invasively, though the reconstruction of these specific fiber bundles is challenging due to their small dimensions and complex anatomy. To the best of our knowledge, a population-based, in vivo probabilistic atlas of subthalamic white matter tracts is still missing. In the present work, we devised an optimized tractography protocol for reproducible reconstruction of the tracts of subthalamic area in a large data sample from the Human Connectome Project repository. First, we leveraged the super-resolution properties and high anatomical detail provided by short tracks track-density imaging (stTDI) to identify the white matter bundles of the subthalamic area on a group-level template. Tracts identification on the stTDI template was also aided by visualization of histological sections of human specimens. Then, we employed this anatomical information to drive tractography at the subject-level, optimizing tracking parameters to maximize between-subject and within-subject similarities as well as anatomical accuracy. Finally, we gathered subject level tracts reconstructed with optimized tractography into a large-scale, normative population atlas. We suggest that this atlas could be useful in both clinical anatomy and functional neurosurgery settings, to improve our understanding of the complex morphology of this important brain region.
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Structures of the basal ganglia and the cerebellum are part of a complex circuitry involved in sensorimotor integration and may take part in integrative processes related to PPS processing.
“Structures of the basal ganglia and the cerebellum are part of a complex circuitry involved, among other functions, in sensorimotor integration (Milardi et al. 2019; Basile et al. 2022b), and they may take part in integrative processes related to PPS processing.”
From Neuroanatomical correlates of peripersonal space: bridging the gap between perception, action, emotion and social cognition (2024) · cites this paper as Basile et al. 2022b
The Introduction (page unavailable) describes pathways from the globus pallidus and cerebellum to the thalamus, and the Results section on the medial lemniscus describes a somatosensory pathway. These passages support the circuitry described, but do not establish that the basal ganglia and cerebellum jointly perform sensorimotor integration. The PPS suggestion follows the citations in the citing sentence and is not attributed to this source. (LLM, conf=0.76)
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MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation
Tournier, J.-D., Smith, R., Raffelt, D., Tabbara, R., Dhollander, T., Pietsch, M., Christiaens, D., Jeurissen, B., Yeh, C.-H., & Connelly, A. (2019) · NeuroImage · doi:10.1016/j.neuroimage.2019.116137 · Cited by 2,974 · see citing works
Tractography-based connectomes are dominated by false-positive connections
Maier-Hein, K. H., Neher, P., Houde, J.-C., Côté, M.-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.-C., Lin, Y.-C., Ji, Q., et al. (2016) · doi:10.1101/084137 · Cited by 1,361 · see citing works
Diffusion MRI fiber tractography of the brain
Jeurissen, B., Descoteaux, M., Mori, S., & Leemans, A. (2019) · NMR in Biomedicine · doi:10.1002/nbm.3785 · Cited by 574 · cited 1× · see citing works
“In the last decade, diffusion-based tractography has been widely employed to reconstruct white matter bundles in vivo (Jeurissen et al. 2019).”
MethodConsistency-based thresholding of the human connectome
Roberts, J. A., Perry, A., Roberts, G., Mitchell, P. B., & Breakspear, M. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2016.09.053 · Cited by 189 · cited 1× · see citing works
“While most of the spurious fiber tracts are also characterized by low between-subject consistency (Roberts et al. 2017) and are subsequently filtered out after group aggregation of individual tractograms (especially after z-thresholding of the resulting maximum probability maps), it is worth noting that even at the gr…”
BackgroundHau, J., Sarubbo, S., Perchey, G., Crivello, F., Zago, L., Mellet, E., Jobard, G., Joliot, M., Mazoyer, B. M., Tzourio-Mazoyer, N., et al. (2016) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2016.00058 · Cited by 142 · see citing works
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Basile, G. A., Tatti, E., Bertino, S., Milardi, D., Genovese, G., Bruno, A., Muscatello, M. R. A., Ciurleo, R., Cerasa, A., Quartarone, A., et al. (2024) · Brain Structure and Function · doi:10.1007/s00429-024-02781-9 · Cited by 24 · see citing works
“…evidence of distinct patterns of brain activity organization, with segregated, yet integrated modules that dynamically interact during rest and task-based activity (van den Heuvel et al. 2009 ; Eickhoff et al. 2011; Laird et al. 2013; Raichle 2015; Margulies et al. 2016; Basile et al. 2022a ).”
BackgroundSelf-citation
- Authors
- Basile, G. A., Quartu, M., Bertino, S., Serra, M. P., Trucas, M., Boi, M., Demontis, R., Bramanti, A., Anastasi, G. P., Milardi, D., Ciurleo, R., & Cacciola, A.
- Affiliations
- University of Messina (IT)
- University of Cagliari (IT)
- University of Salerno (IT)
- Centro Neurolesi Bonino Pulejo (IT)
- Corresponding author
- Basile, Gianpaolo Antonio
- Cacciola, Alberto
- ORCID
- Venue
- Brain Structure and Function
- Published
- 2022-09-17
- Volume
- 227
- Issue
- 8
- Pages
- 2647-2665
- ISSN
- 1863-2653 (ISSN-L)
- 1863-2661
- PMC
- PMC9618529
- OpenAlex
- W4296162502
- Cited by
- 12
- References
- 5
- Citations by year
- 2026: 2 · 2025: 1 · 2024: 7 · 2023: 2
- FWCI
- 1.42
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Brain Structure and Function (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- UNICA IRIS Institutional Research Information System (University of Cagliari) (submittedVersion, other-oa)
- Funders
- Università degli Studi di Cagliari
- National Institutes of Health (5u54mh091657-05, 1U54‐MH‐091657)
- McDonnell Center for Systems Neuroscience (1U54MH091657)
- NIH Blueprint for Neuroscience Research (1U54-MH-091657)
- Topics
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Advanced Neuroimaging Techniques and Applications
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Health Sciences › Medicine › Neurology › Cerebrovascular and genetic disorders
- Keywords
- white matter tracts, probabilistic atlas, diffusion tractography, mammillothalamic tract, functional neurosurgery, Human Connectome Project, histopathological confirmation
- MeSH terms
- Brain, Cerebellum, Humans, Diffusion Tensor Imaging, Connectome, White Matter
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