CoChat
Sign Up
Cited by 36

The DOI matches its Crossref record.

An Optimized Approach for Protein Residue Extraction and Identification from Ceramics After Cooking

Barker, Andrew, Venables, Barney, Stevens, Stanley M., Seeley, Kent W, Wang, Peggy, Wolverton, Steve·2012·Journal of Archaeological Method and Theory
DOI 10.1007/s10816-011-9120-5
Open this paper in CoChat — free account

Overview

Integrity signals

Registry

Crossref · 10.1007/s10816-011-9120-5

Cites

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • While some success from extracting proteins from ceramics has been reported, challenges have arisen in removal of protein from the silica matrix and protein preservation in this context is not fully understood.

    “While some success from extracting proteins from ceramics has been reported (117–120), challenges have arisen in the removal of protein from the silica matrix and protein preservation in this context is not fully understood (7, 121, 122).”

    From Ancient protein analysis in archaeology (2021) · cites this paper as [118]

Citations

Cites

No references could be resolved yet.

Research works printed but not linked: 58

  1. Asara, J. M., Garavelli, J. S., Slatter, D. A., Schweitzer, M. H., Freimark, L. M., Phillips, M., et al. (2007). Interpreting sequences from Mastodon and T. rex. Science, 317, 1324–1325. · DOI
  2. Barker, A. (2010a). Archaeological Protein Residues: New Data for Conservation Science. Ethnobiology Letters, 1, 58–65. · DOI
  3. Barker, A. L. (2010b). Archaeological proteomics: Method development and analysis of protein–ceramic binding. Master’s thesis, Department of Geography, University of North Texas, Denton, TX.
  4. Barnard, H., & Eerkens, J. W. (Eds.). (2007). Theory and practice of archaeological residue analysis. Oxford: Archaeopress.
  5. Barnard, H., Shoemaker, L., Craig, O. E., Rider, M., Parr, R. E., Sutton, M. Q., et al. (2007). Chapter 17: Introduction to the analysis of protein residues in archaeological ceramics. In H. Barnard & J. W. Eerkens (Eds.), Theory and practice of archaeological residue analysis (pp. 216–228). Oxford: Archaeopress. · DOI
  6. Barnard, H., Ambrose, S. H., Beehr, D. E., Forster, M. D., Lanehart, R. E., Malainey, M. E., et al. (2007). Mixed results of seven methods for organic residue analysis applied to one vessel with the residue of a known foodstuff. Journal of Archaeological Science, 34, 28–37. · DOI
  7. Brown, T., & Brown, K. (2011). Biomolecular archaeology: An introduction. West Sussex: Wiley-Blackwell. · DOI
  8. Buckley, M., Walker, A., Ho, S. Y. W., Yang, Y., Smith, C., Ashton, P., et al. (2008). Comment on “Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry”. Science, 319, 33. · DOI · Paper page
  9. Buckley, M., Kansa, S. W., Howard, S., Campbell, S., Thomas-Oates, J., & Collins, M. (2010). Distinguishing between archaeological sheep and goat bones using a single collagen peptide. Journal of Archaeological Science, 37, 13–20. · DOI · Paper page
  10. Cappellini, E., Gilbert, M. T. P., Geuna, F., Fiorentino, G., Hall, A., Thomas-Oates, J., et al. (2010). A multidisciplinary study of archaeological grape seeds. Naturwissenschaften, 97, 205–217. · DOI
  11. Charters, S., Evershed, R. P., Goad, L. J., Blinkhorn, P. W., & Denham, V. (1993). Quantification and distribution of lipid in archaeological ceramics: Implications for sampling potsherds for organic residue analysis. Archaeometry, 35, 211–223. · DOI · Paper page
  12. Charters, S., Evershed, R. P., Quye, A., Blinkhorn, P. W., & Reeves, V. (1997). Simulation experiments for determining the use of ancient pottery vessels: The behavior of epicuticular leaf wax during boiling of a leafy vegetable. Journal of Archaeological Science, 24, 1–7. · DOI
  13. Craig, O., Mulville, J., Pearson, M. P., Sokol, R., Gelsthorpe, K., Staceyll, R., et al. (2000). Detecting milk proteins in ancient pots. Nature, 408, 312. · DOI · Paper page
  14. Craig, O. E., Taylor, G., Mulville, J., Collins, M. J., & Pearson, M. P. (2005). The identification of prehistoric dairying activities in the Western Isles of Scotland: An integrated biomolecular approach. Journal of Archaeological Science, 32, 91–103. · DOI
  15. Craig, O. E., & Collins, M. J. (2000). An improved method for the immunological detection of mineral bound protein using hydrofluoric acid and direct capture. Journal of Immunological Methods, 236, 89–97. · DOI · Paper page
  16. Craig, O. E., & Collins, M. J. (2002). The removal of protein residues from mineral surfaces: Implications for residue analysis of archaeological materials. Journal of Archaeological Science, 29, 1077–1082. · DOI
  17. Cruz, G. A. D. R., de Almeida Oliveira, M. G., Pires, C. V., de Araújo Gomes, M. R., Costa, N. M. N., Brumano, M. H. N., et al. (2003). Protein quality and in vivo digestibility of different varieties of bean (Phaseolus vulgaris L.). Brazilian Journal of Food Technology, 6, 157–162.
  18. Dongoske, K. E., Martin, D. L., & Ferguson, T. J. (2000). Critique of the claim of cannibalism at Cowboy Wash. American Antiquity, 65, 179–190. · DOI
  19. Downs, E. F., & Lowenstein, J. M. (1995). Identification of archaeological blood proteins: A cautionary note. Journal of Archaeological Science, 22, 11–16. · DOI
  20. Driver, J. C. (1992). Identification, classification and zooarchaeology. Circaea, 9, 35–47.
  21. Eerkens, J. (2002). The preservation and identification of piñon resins by GC-MS in pottery from the Western Great Basin. Archaeometry, 44, 95–105. · DOI
  22. Eerkens, J. (2005). GC-MS analysis and fatty acid ratios of archaeological potsherds from the Western Great Basin of North America. Archaeometry, 47, 83–102. · DOI · Paper page
  23. Evershed, R. P. (2008a). Experimental approaches to the interpretation of absorbed organic residues in archaeological ceramics. World Archaeology, 40, 26–47. · DOI · Paper page
  24. Evershed, R. P. (2008b). Organic residue analysis in archaeology: The archaeological biomarker revolution. Archaeometry, 50, 895–924. · DOI · Paper page
  25. Evershed, R. P., & Tuross, N. (1996). Proteinaceous material from potsherds and associated soils. Journal of Archaeological Science, 23, 429–436. · DOI · Paper page
  26. Fiedel, S. (1996). Blood from stones? Some methodological and interpretive problems in blood residue analysis. Journal of Archaeological Science, 23, 139–147. · DOI
  27. Fogel, M. L., & Tuross, N. (1999). Transformation of plant biochemicals to geological macromolecules. Oecologia, 120, 336–346. · DOI
  28. Fremout, W., Sanyova, J., Saverwyns, S., Vandenabeele, P., & Moens, L. (2009). Identification of protein binders in works of art by high-performance liquid chromatography–diode array detector analysis of their tryptic digests. Analytical and Bioanalytical Chemistry, 393, 1991–1999. · DOI
  29. Graves, H. C. B. (1988). The effect of surface charge on non-specific binding of rabbit immunoglobin G in solid-phase assays. Journal of Immunological Methods, 22, 157–166. · DOI
  30. Heaton, K., Solazzo, C., Collins, M. J., Thomas-Oates, J., & Bergstrom, E. T. (2009). Towards the application of desorption electrospray ionisation mass spectrometry (DESI-MS) to the analysis of ancient proteins from artefacts. Journal of Archaeological Science, 36, 2145–2154. · DOI
  31. Hyland, D. C., Tersak, J. M., Adovasio, J. M., & Siegel, M. I. (1990). Identification of species of origin of residual blood on lithic material. American Antiquity, 55, 104–112. · DOI
  32. Keller, A., Nesvizhskii, A. I., Kolker, E., & Aebersold, R. (2003). Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Analytical Chemistry, 74, 5383–5392. · DOI
  33. Kenkel, J. (2003). Analytical chemistry for technicians (3rd ed.). Boca Raton: Lewis.
  34. Kleber, M., Sollins, P., & Sutton, R. (2007). A conceptual model of organo-mineral interactions in soils: Self-assembly of organic molecular fragments into zonal structures on mineral surfaces. Biogeochemistry, 85, 9–24. · DOI
  35. Kuckova, S., Hynek, R., & Kodicek, M. (2007). Identification of proteinaceous binders used in artworks by MALDI-TOF mass spectrometry. Analytical and Bioanalytical Chemistry, 388, 201–206. · DOI
  36. Li, A., Sowder, R. C., Henderson, L. E., Moore, S. P., Garfinkel, D. J., & Fisher, R. J. (2001). Chemical cleavage at aspartyl residues for protein identification. Analytical Chemistry, 73, 5395–5402. · DOI
  37. Loy, T., & Dixon, E. J. (1998). Blood residues on fluted points from Eastern Alaska. American Antiquity, 63, 21–46. · DOI
  38. Malainey, M. E., Pryzybylski, P., & Sherriff, B. L. (1999). The fatty acid composition of native food plants and animals of Western Canada. Journal of Archaeological Science, 26, 83–94. · DOI
  39. Marlar, R. A., Leonard, B. L., Billman, B. R., Lambert, P., & Marlar, J. E. (2000). Biochemical evidence of cannibalism in a prehistoric pueblo site in Southwestern Colorado. Nature, 407, 73–78. · DOI
  40. Matheson, C. D., Hall, J., & Viel, R. (2009). Drawing first blood from Maya ceramics at Copán, Honduras. In M. Haslam (Ed.), Archaeological science under a microscope: Studies in residue and ancient DNA analysis in honor of Thomas H. Loy (pp. 190–197). Canberra: ANU E Press.
  41. Nesvizhskii, A. I., Keller, A., Kolker, E., & Aebersold, R. (2003). A statistical model for identifying proteins by tandem mass spectrometry. Analytical Chemistry, 75, 4646–4658. · DOI
  42. Nielsen-Marsh, C. M., Richards, M. P., Hauschka, P. V., Thomas-Oates, J. E., Trinkhaus, E., Pettitt, P. B., et al. (2005). Osteocalcin protein sequences of Neanderthals and modern primates. Proceedings of the National Academy of Sciences, 102, 4409–4413. · DOI
  43. Oudemans, T. F. M., Eijkel, G. B., & Boon, J. J. (2007). Identifying biomolecular origins of solid organic residues preserved in Iron Age pottery using DTMS and MVA. Journal of Archaeological Science, 34, 173–193. · DOI
  44. Outram, A. K., Stear, N. A., Bendrey, R., Olsen, S., Kasparov, A., Zaibert, V., et al. (2009). The earliest horse harnessing and milking. Science, 323, 1332–1335. · DOI
  45. Owen, W. E., & Roberts, L. W. (2004). Cross-reactivity of three recombinant insulin analogs with five commercial insulin immunoassays. Clinical Chemistry, 50, 257–259. · DOI · Paper page
  46. Pevzner, P. A., Kim, S., & Ng, J. (2008). Comment on “Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry”. Science, 321, 1040. · DOI · Paper page
  47. Pinck, L. A., & Allison, F. E. (1951). Resistance of a protein–montmorillonite complex to decomposition by soil microorganisms. Science, 114, 130–131. · DOI
  48. Reber, E. A., & Evershed, R. P. (2004). Identification of maize in absorbed organic residues: A cautionary tale. Journal of Archaeological Science, 31, 399–410. · DOI
  49. Rillig, M., Caldwell, B. A., Wösten, H. A. B., & Sollins, P. (2007). Role of proteins in soil carbon and nitrogen storage: Controls on persistence. Biogeochemistry, 85, 25–44. · DOI
  50. Schweitzer, M. H., Zheng, W., Organ, C. L., Avci, R., Suo, Z., Freimark, L. M., et al. (2009). Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis. Science, 324, 626–631. · DOI · Paper page
  51. Solazzo, C., Fitzhugh, W. W., Rolando, C., & Tokarski, C. (2008). Identification of protein remains in archaeological potsherds by proteomics. Analytical Chemistry, 80, 4590–4597. · DOI · Paper page
  52. Stevens, S. M., Jr., Wolverton, S., Venables, B., Barker, A., Seeley, K. W., & Adhikari, P. (2010). Evaluation of microwave-assisted enzymatic digestion and tandem mass spectrometry for the identification of protein residues from an inorganic solid matrix: Implications for archaeological research. Analytical and Bioanalytical Chemistry, 396, 1491–1499. · DOI
  53. Tokarski, C., Martin, E., Rolando, C., & Cren-Olive, C. (2006). Identification of proteins in renaissance paintings by proteomics. Analytical Chemistry, 78, 1494–1502. · DOI
  54. Valdes, R., Jr., & Jortani, S. A. (2002). Unexpected suppression of immunoassay results by cross-reactivity: Now a demonstrated cause for concern. Clinical Chemistry, 48, 405–406. · DOI
  55. Waterboer, T., Seher, P., & Pawlita, M. (2006). Suppression of non-specific binding in serological Luminex assays. Journal of Immunological Methods, 309, 200–204. · DOI
  56. Wessel, D., & Fugge, U. I. (1984). A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Analytical Biochemistry, 138, 141–143. · DOI
  57. Yohe, R. M., II, Newman, M., & Schneider, J. S. (1991). Immunological identification of small-mammal proteins on aboriginal milling equipment. American Antiquity, 56, 659–666. · DOI
  58. Zang, X., van Heemst, J. D. H., Dria, K. J., & Hatcher, P. G. (2000). Encapsulation of protein in humic acid from a histosol as an explanation for the occurrence of organic nitrogen in soil and sediment. Organic Geochemistry, 31, 679–695. · DOI

Cited by

Sorted by citations

Metadata

Authors
Barker, A., Venables, B., Stevens, S. M., Seeley, K. W., Wang, P., & Wolverton, S.
Venue
Journal of Archaeological Method and Theory
Publisher
Springer Science and Business Media LLC
Published
2011-09-08
Volume
19
Issue
3
Pages
407-439
ISSN
  • 1072-5369
  • 1573-7764
DOI
10.1007/s10816-011-9120-5
Cited by
36
References
0
Language
en
Licence
www.springer.com/tdm (tdm)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review