Noncoding RNA: from dark matter to bright star

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The sequence of the human genome

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Landscape of transcription in human cells

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Genome Regulation by Long Noncoding RNAs

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The Transcriptional Landscape of the Mammalian Genome

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Central Dogma of Molecular Biology

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Exon-intron circular RNAs regulate transcription in the nucleus

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The ENCODE (ENCyclopedia Of DNA Elements) Project

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Circular intronic long noncoding RNAs

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Nuclear m6A Reader YTHDC1 Regulates mRNA Splicing

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Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

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Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder

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Secreted Monocytic miR-150 Enhances Targeted Endothelial Cell Migration

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5-methylcytosine promotes mRNA export — NSUN2 as the methyltransferase and ALYREF as an m5C reader

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A Role for Small RNAs in DNA Double-Strand Break Repair

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NONCODEV5: a comprehensive annotation database for long non-coding RNAs

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Base-Resolution Mapping Reveals Distinct m1A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts

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Long Noncoding RNAs with snoRNA Ends

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A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtiiPreprint

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Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

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siRNA therapeutics: a clinical reality

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Landscape and Regulation of m6A and m6Am Methylome across Human and Mouse Tissues

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PMS1T , producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

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A Circular RNA Protects Dormant Hematopoietic Stem Cells from DNA Sensor cGAS-Mediated Exhaustion

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Ubiquitination-Deficient Mutations in Human Piwi Cause Male Infertility by Impairing Histone-to-Protamine Exchange during Spermiogenesis

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Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals

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Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice

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Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice

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A Translation-Activating Function of MIWI/piRNA during Mouse Spermiogenesis

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IL-13 secreted by ILC2s promotes the self-renewal of intestinal stem cells through circular RNA circPan3

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Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice

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Improved methods for structure probing in large RNAs: a rapid ‘heterologous’ sequencing approach is coupled to the direct mapping of nudease accessible sites. Application to the 5′nal domain of eukaryotic 28S rRNA

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MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein

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Identification of 20 microRNAs from Oryza sativa

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Oryza sativa Dicer-like4Reveals a Key Role for Small Interfering RNA Silencing in Plant Development

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Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia

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snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome

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Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expressionPreprint

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Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics

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Ribosome profiling analysis identified a KRAS-interacting microprotein that represses oncogenic signaling in hepatocellular carcinoma cells

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“Seq-ing” Insights into the Epigenetics of Neuronal Gene Regulation

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The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa

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Emerging roles of non-coding RNAs in epigenetic regulation

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Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana

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Resistance of S-RNA to ribonucleases in the presence of magnesium ion

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Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarrayPreprint

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The RNA-binding protein ROD1/PTBP3 cotranscriptionally defines AID-loading sites to mediate antibody class switch in mammalian genomes

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Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia

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A novel gene organization: intronic snoRNA gene clusters from Oryza sativa

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Splicing dysregulation in cancer: from mechanistic understanding to a new class of therapeutic targets

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An LTR retrotransposon‐derived lncRNA interacts with RNF169 to promote homologous recombination

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The lifestyle transition of Arthrobotrys oligospora is mediated by microRNA-like RNAs

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A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes

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Reading the Second Code: Mapping Epigenomes to Understand Plant Growth, Development, and Adaptation to the Environment

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Epitranscriptomic technologies and analyses

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Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library

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The background of the total synthesis of yeast alanine transfer RNA

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Crystal structure of Cas1 in complex with branched DNA

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Extended synaptotagmins, peroxisome-endoplasmic reticulum contact and cholesterol transport

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Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials

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Recent Advances and Future Perspectives in Cotton Research

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A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

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RNA therapeutics: updates and future potential

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Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation

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Long Non-Coding RNAs: New Players in Plants

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Recent advances in RNA structurome

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Long Non-Coding RNAs in Cardiovascular Diseases: Potential Function as Biomarkers and Therapeutic Targets of Exercise Training

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LncRNA CFAR promotes cardiac fibrosis via the miR-449a-5p/LOXL3/mTOR axis

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The regulatory role of miRNA and lncRNA on autophagy in diabetic nephropathy

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A novel MYCN-YTHDF1 cascade contributes to retinoblastoma tumor growth by eliciting m6A -dependent activation of multiple oncogenes

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Functional roles of conserved lncRNAs and circRNAs in eukaryotes

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Identification and characterization of long non-coding RNA Carip in modulating spatial learning and memory

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Critical roles of non-coding RNAs in lifecycle and biology of Marek’s disease herpesvirus

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Epigenetics: Novel crucial approach for osteogenesis of mesenchymal stem cells

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Structure-based insights into recognition and regulation of SAM-sensing riboswitches

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Emphasizing the Role of Long Non-Coding RNAs (lncRNA), Circular RNA (circRNA), and Micropeptides (miPs) in Plant Biotic Stress Tolerance

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A hidden translatome in tumors—the coding lncRNAs

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Concerto on Chromatin: Interplays of Different Epigenetic Mechanisms in Plant Development and Environmental Adaptation

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Systematic characterization of small RNAs associated with C. elegans Argonautes

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Harnessing the potential of non-coding RNA: An insight into its mechanism and interaction in plant biotic stress

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A Malvaceae-specific miRNA targeting the newly duplicated GaZIP1L to regulate Zn2+ ion transporter capacity in cotton ovules

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Distinct pathogenic mechanisms of various RARS1 mutations in Pelizaeus-Merzbacher-like disease

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The functional analysis of transiently upregulated miR-101 suggests a “braking” regulatory mechanism during myogenesis

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Contribution of structural accessibility to the cooperative relationship of TF-lncRNA in myopia

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Prognostic Value of lncRNA DRAIC and miR-3940-3p in Lung Adenocarcinoma and Their Effect on Lung Adenocarcinoma Cell Progression

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Decoding noncoding RNAs in regulating cardiovascular aging and age-related conditions: the emerging landscape

Wang, Z., Zhang, X., Li, W., & Yang, B. (2025) · Science China Life Sciences · doi:10.1007/s11427-024-2967-8 · Cited by 8 · see citing works

DNA numerical encoding schemes for exon prediction: a recent history

Das, L., Das, J., Mohapatra, S., & Nanda, S. (2021) · Nucleosides, Nucleotides & Nucleic Acids · doi:10.1080/15257770.2021.1966797 · Cited by 2 · see citing works

Identification of the Genome-Wide Expression Patterns of Non-Coding RNAs Associated with Tanshinones Synthesis Pathway in Salvia miltiorrhiza

Lin, C., Zhou, C., Liu, Z., Li, X., & Song, Z. (2023) · Agronomy · doi:10.3390/agronomy13020321 · Cited by 4 · see citing works

Aberrantly Expressed Small Noncoding RNAome in Keloid Skin Tissue

Yin, C., Wang, C., & Wang, C. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.803083 · Cited by 3 · see citing works

Epigenetics and abiotic stress tolerance in wheat crops: Consequences and application

Yang, Z., Zhi, P., Li, H., Wang, X., & Chang, C. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-95368-9.00017-5 · Cited by 2 · see citing works

Tumor‐Selective Gene Therapy: Using Hairpin DNA Oligonucleotides to Trigger Cleavage of Target RNA by Endogenous flap endonuclease 1 (FEN 1) Highly Expressed in Tumor Cells

Wang, C., Wang, C., Xiao, C., Zhang, W., Guo, Y. H., Qu, M., Song, Q., Qi, X., & Zou, B. (2025) · Small · doi:10.1002/smll.202410146 · Cited by 1 · see citing works

LncRNAs co-expressed with targeted genes to regulate sugarcane response to Sporisorium scitamineum infection

Zhao, W., Zhao, Z., Wang, D., Zhang, Y., Lin, P., Zhang, Z., Que, Y., & Wu, Q. (2025) · Plant Cell Reports · doi:10.1007/s00299-025-03555-1 · Cited by 1 · see citing works

An introduction to the themed issue on RNA biology in China

Wu, Z. (2020) · Essays in Biochemistry · doi:10.1042/ebc20200031

Transcriptomes Analysis Reveals the Regulatory Roles of Noncoding RNA in Tanshinones Synthesis Pathway of Salvia MiltiorrhizaPreprint

Lin, C., Zhou, C., Liu, Z., Li, X., & Song, Z. (2021) · Research Square · doi:10.21203/rs.3.rs-736448/v1

The microRNA-144/451 cluster in plasma-derived microvesicles and erythrocytes in patients with history of pulmonary embolism

Сироткина, О. В., Ulitina, A. S., Zhilenkova, Y. I., Алексеевна, З. Е., Simakova, M. A., Моисеева, О. М., & Вавилова, Т. В. (2023) · Pharmacogenetics and Pharmacogenomics · doi:10.37489/2588-0527-2023-1-20-32

Mapping In Situ RNA–RNA Interactions with RIC-seq

Ye, R., Cai, Z., & Xue, Y. (2023) · RNA technologies · doi:10.1007/978-3-031-36390-0_3

Study on the mechanism of lncRNAs in lung adenocarcinoma based on BioinformaticsPreprint

Hu, B., Xia, X., & Man, C. (2025) · Research Square · doi:10.21203/rs.3.rs-7767452/v1

Noncoding RNA - The Dark Matter of the Genome

Dabas, P. (2023) · Genetics. · doi:10.5772/intechopen.111315 · Cited by 2 · see citing works

Non-Coding RNAs: The “Dark Matter ” of

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Non-coding RNA annotation: Deciphering the second genetic code

Qu, L. (2013) · Science China Life Sciences · doi:10.1007/s11427-013-4544-7 · Cited by 2 · see citing works