A general method applicable to the search for similarities in the amino acid sequence of two proteins

Evolving Genes and Proteins

Bryson, V., & Vogel, H. J. (1965) · Science · doi:10.1126/science.147.3653.68 · Cited by 1,343

The Amino Acid Sequence of Egg White Lysozyme

Canfield, R. E. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67888-3 · Cited by 739

The Sequence of Amino Acid Residues in Bovine Pancreatic Ribonuclease: Revisions and Confirmations

Smyth, D. G., Stein, W. H., & Moore, S. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)83984-4 · Cited by 567

Amino-Acid Sequence of Sperm Whale Myoglobin

Edmundson, A. B. (1965) · Nature · doi:10.1038/205883a0 · Cited by 396

Margaret O. Dayhoff: Atlas of Protein Sequence and Structure 1969 (Volume 4) XXIV u. 361 S., 21 Ausklapptafeln, 68 Abb. und zahlreiche Tabellen. National Biomedical Research Foundation, Silver Spring/Maryland 1969. Preis $ 12,50

Meisel, P. (1971) · Food / Nahrung · doi:10.1002/food.19710150234 · Cited by 346

An improved method of testing for evolutionary homology

Fitch, W. M. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80258-9 · Cited by 313

Fine Structure of RNA Codewords Recognized by Bacterial, Amphibian, and Mammalian Transfer RNA

Marshall, R. E., Caskey, C. T., & Nirenberg, M. W. (1967) · Science · doi:10.1126/science.155.3764.820 · Cited by 147

The Structure of Human Hemoglobin

Konigsberg, W. H., & Hill, R. (1962) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)50137-x · Cited by 115

The Structure of Human Hemoglobin

Konigsberg, W. H., Goldstein, J., & Hill, R. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67936-0 · Cited by 76

A Comparison of the Amino Acid Sequences of the Cytochrome c of Several Vertebrates.

Margoliash, E., Needleman, S. B., Stewart, J. W., & Takahashi, M. T. (1963) · Acta chemica Scandinavica/Acta chemica Scandinavica. B, Organic chemistry and biochemistry/Acta chemica Scandinavica. A, Physical and inorganic chemistry/Acta chemica Scandinavica. Series B. Organic chemistry and biochemistry/Acta chemica Scandinavica. Series A, Physical and inorganic chemistry · doi:10.3891/acta.chem.scand.17s-0250 · Cited by 25

Covalent structure of human haptoglobin: a serine protease homolog.

Kurosky, A., Barnett, D. R., Lee, T. H., Touchstone, B., Hay, R. E., Arnott, M. S., Bowman, B. H., & Fitch, W. M. (1980) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.77.6.3388 · Cited by 243

GraphAligner: rapid and versatile sequence-to-graph alignment

Rautiainen, M., & Marschall, T. (2020) · Genome Biology · doi:10.1186/s13059-020-02157-2 · Cited by 242

PROMALS3D: Multiple Protein Sequence Alignment Enhanced with Evolutionary and Three-Dimensional Structural Information

Pei, J., & Grishin, N. V. (2013) · Methods in molecular biology · doi:10.1007/978-1-62703-646-7_17 · Cited by 241

A geometric approach to robotic laundry folding

Miller, S., van den Berg, J., Fritz, M., Darrell, T., Goldberg, K., & Abbeel, P. (2011) · The International Journal of Robotics Research · doi:10.1177/0278364911430417 · Cited by 238

Discovering patterns to extract protein–protein interactions from full texts

Huang, M., Zhu, X., Hao, Y., Payan, D. G., Qu, K., & Li, M. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth451 · Cited by 241

Signal-3L: A 3-layer approach for predicting signal peptides

Shen, H., & Chou, K. (2007) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2007.08.140 · Cited by 241

Starcode: sequence clustering based on all-pairs search

Zorita, E. V., Cuscó, P., & Filion, G. J. P. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv053 · Cited by 241

NADPH-cytochrome P-450 oxidoreductase: flavin mononucleotide and flavin adenine dinucleotide domains evolved from different flavoproteins

Porter, T. D., & Kasper, C. B. (1986) · Biochemistry · doi:10.1021/bi00355a036 · Cited by 241

Cloning, nucleotide sequence, and characterization of genes encoding the secretion function of the Pasteurella haemolytica leukotoxin determinant

Strathdee, C. A., & Lo, R. Y. C. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.2.916-928.1989 · Cited by 239

Bilingual language model for protein sequence and structure

Heinzinger, M., Weissenow, K., Sanchez, J. G., Henkel, A., Mirdita, M., Steinegger, M., & Rost, B. (2024) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqae150 · Cited by 311

Simultaneous alignment of short reads against multiple genomes

Schneeberger, K., Hagmann, J., Ossowski, S., Warthmann, N., Gesing, S., Kohlbacher, O., & Weigel, D. (2009) · Genome biology · doi:10.1186/gb-2009-10-9-r98 · Cited by 238

Web Services at the European Bioinformatics Institute

Labarga, A., Valentin, F., Anderson, M., & López, R. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm291 · Cited by 238

High-throughput mapping of regulatory DNA

Rajagopal, N., Srinivasan, S., Kooshesh, K., Guo, Y., Edwards, M. D., Banerjee, B., Syed, T., Emons, B. J. M., Gifford, D. K., & Sherwood, R. I. (2016) · Nature Biotechnology · doi:10.1038/nbt.3468 · Cited by 238

Exploring the computational methods for protein-ligand binding site prediction

Zhao, J., Cao, Y., & Zhang, L. (2020) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2020.02.008 · Cited by 245

Comparative Protein Structure Modeling: Introduction and Practical Examples with Modeller

Sánchez, R., & Šali, A. (2003) · Humana Press eBooks · doi:10.1385/1-59259-368-2:97 · Cited by 238

SSC1, an Essential Member of the Yeast HSP70 Multigene Family, Encodes a Mitochondrial Protein

Craig, E. A., Kramer, J., Shilling, J., Werner‐Washburne, M., Holmes, S. A., Kosic-Smithers, J., & Nicolet, C. M. (1989) · Molecular and Cellular Biology · doi:10.1128/mcb.9.7.3000-3008.1989 · Cited by 236

MOLECULAR CLONING OF INTERLEUKIN 1β FROM RAINBOW TROUT ONCORHYNCHUS MYKISS REVEALS NO EVIDENCE OF AN ICE CUT SITE

Zou, J., Grabowski, P., Cunningham, C., & Secombes, C. J. (1999) · Cytokine · doi:10.1006/cyto.1998.0470 · Cited by 235

Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

Kawrykow, A., Roumanis, G., Kam, A., Kwak, D., Leung, C., Wu, C. L., Zarour, E., players, P., Sarmenta, L. F. G., Blanchette, M., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0031362 · Cited by 248

SSAW: A new sequence similarity analysis method based on the stationary discrete wavelet transform

Lin, J., Wei, J. X., Adjeroh, D., Jiang, B., & Jiang, Y. (2018) · BMC Bioinformatics · doi:10.1186/s12859-018-2155-9 · Cited by 235

On Gaps

Giribet, G., & Wheeler, W. C. (1999) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1999.0643 · Cited by 235

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

Kemena, C., & Notredame, C. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp452 · Cited by 250

Optimal sequence alignment using affine gap costs

Altschul, S. F., & Erickson, B. W. (1986) · Bulletin of Mathematical Biology · doi:10.1007/bf02462326 · Cited by 234

Bacterial ureases: structure, regulation of expression and role in pathogenesis

Collins, C. M., & D’Orazio, S. E. F. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01220.x · Cited by 234

The Classical Arabinogalactan Protein Gene Family of Arabidopsis

Schultz, C., Johnson, K. L., Currie, G., & Bacic, A. (2000) · The Plant Cell · doi:10.1105/tpc.12.9.1751 · Cited by 242

Extracting protein alignment models from the sequence database

Neuwald, A. F., Liu, J. S., Lipman, D. J., & Lawrence, C. E. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.9.1665 · Cited by 234

Superhuman performance of surgical tasks by robots using iterative learning from human-guided demonstrations

van den Berg, J., Miller, S., Duckworth, D., Hu, H., Wan, A., Fu, X., Goldberg, K., & Abbeel, P. (2010) · Proceedings - IEEE International Conference on Robotics and Automation/Proceedings · doi:10.1109/robot.2010.5509621 · Cited by 233

Knowledge-Based Protein Modeling

Johnson, M. S., Srinivasan, N., Sowdhamini, R., & Blundell, T. L. (1994) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409239409086797 · Cited by 236

Characterization of a periplasmic thiol:disulfide interchange protein required for the functional maturation of secreted virulence factors of Vibrio cholerae.

Peek, J. A., & Taylor, R. K. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.13.6210 · Cited by 232

Comparative genomics: genome-wide analysis in metazoan eukaryotes

Ureta‐Vidal, A., Ettwiller, L. M., & Birney, E. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1043 · Cited by 236

Molecular Cloning of a Tissue-Specific Protein Kinase (Cγ) from Human Testis—Representing a Third Isoform for the Catalytic Subunit of cAMP-Dependent Protein Kinase

Beebe, S. J., Øyen, O. M., Sandberg, M., Frøysa, A., Hansson, V., & Jahnsen, T. (1990) · Molecular Endocrinology · doi:10.1210/mend-4-3-465 · Cited by 232

Sequence Alignment as a Method for Human Activity Analysis in Space and Time

Shoval, N., & Isaacson, M. (2007) · Annals of the Association of American Geographers · doi:10.1111/j.1467-8306.2007.00536.x · Cited by 231

SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation

da Maia, L. C., Palmieri, D. A., de Souza, V. Q., Köpp, M. M., de Carvalho, F. I. F., & de Oliveira, A. C. (2008) · International Journal of Plant Genomics · doi:10.1155/2008/412696 · Cited by 228

Analysis of Scores, Datasets, and Models in Visual Saliency Prediction

Borji, A., Tavakoli, H. R., Sihite, D. N., & Itti, L. (2013) · IEEE/CVF International Conference on Computer Vision (ICCV) · doi:10.1109/iccv.2013.118 · Cited by 230

A machine learning information retrieval approach to protein fold recognition

Cheng, J., & Baldi, P. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl102 · Cited by 230

How, When, and Where Relic DNA Affects Microbial Diversity

Lennon, J. T., Muscarella, M. E., Placella, S., & Lehmkuhl, B. K. (2018) · mBio · doi:10.1128/mbio.00637-18 · Cited by 247

Phylogenetic reconstruction of the felidae using 16S rRNA and NADH-5 mitochondrial genes

Johnson, W. E., & O’Brien, S. J. (1997) · Journal of Molecular Evolution · doi:10.1007/pl00000060 · Cited by 232

Organization of the human lipoprotein lipase gene and evolution of the lipase gene family.

Kirchgessner, T. G., Chuat, J., Heinzmann, C., Étienne, J., Guilhot, S., Svenson, K. L., Ameis, D., Pilon, C., d'Auriol, L., & Andalibi, A. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.24.9647 · Cited by 229

A rapid method of protein structure alignment

Orengo, C. A., & Taylor, W. R. (1990) · Journal of Theoretical Biology · doi:10.1016/s0022-5193(05)80263-2 · Cited by 228

Learning for control from multiple demonstrations

Coates, A., Abbeel, P., & Ng, A. Y. (2008) · International Conference on Machine Learning · doi:10.1145/1390156.1390175 · Cited by 228

Bacterial aromatic ring-cleavage enzymes are classified into two different gene families

Harayama, S., & Rekik, M. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)84830-5 · Cited by 228

Multiple sequence alignment modeling: Methods and applications

Chatzou, M., Magis, C., Chang, J.-M., Kemena, C., Bussotti, G., Erb, I., & Notredame, C. (2016) · Briefings in Bioinformatics · doi:10.1093/bib/bbv099 · Cited by 229

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

Neidle, E. L., Hartnett, C., Ornston, L. N., Bairoch, A., Rekik, M., & Harayama, S. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.17.5385-5395.1991 · Cited by 227

Cloning and complete nucleotide sequence of mouse immunoglobulin γ1 chain gene

Honjo, T., Obata, M., Yamawaki‐Kataoka, Y., Kataoka, T., Kawakami, T., Takahashi, N., & Mano, Y. (1979) · Cell · doi:10.1016/0092-8674(79)90072-2 · Cited by 227

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

Hayden, E. J., Ferrada, E., & Wagner, A. (2011) · Nature · doi:10.1038/nature10083 · Cited by 228

Organizational Misfits and the Origins of Brokerage in Intrafirm Networks

Kleinbaum, A. M. (2012) · Administrative Science Quarterly · doi:10.1177/0001839212461141 · Cited by 225

Cloning of a novel member of the low-density lipoprotein receptor family

Hey, P. J., Twells, R. C. J., Phillips, M. S., Nakagawa, Y., Brown, S. D., Kawaguchi, Y., Cox, R., Xie, G., Dugan, V., Hammond, H. A., et al. (1998) · Gene · doi:10.1016/s0378-1119(98)00311-4 · Cited by 222

Autoantibodies to DFS 70 kd/transcription coactivator p75 in atopic dermatitis and other conditions

Ochs, R., Muro, Y., Si, Y., Ge, H., Chan, E. K. L., & Tan, E. M. (2000) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2000.107039 · Cited by 223

Emergence of Drift Variants That May Affect COVID-19 Vaccine Development and Antibody Treatment

Koyama, T., Weeraratne, D., Snowdon, J. L., & Parida, L. (2020) · Pathogens · doi:10.3390/pathogens9050324 · Cited by 223

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

Gerstein, M., & Levitt, M. (1998) · Protein Science · doi:10.1002/pro.5560070226 · Cited by 221

ProGen: Language Modeling for Protein GenerationPreprint

Madani, A., McCann, B., Naik, N., Keskar, N. S., Anand, N., Eguchi, R. R., Huang, P., & Socher, R. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.07.982272 · Cited by 383

Orthopoxvirus Genome Evolution: The Role of Gene Loss

Hendrickson, R. C., Wang, C., Hatcher, E., & Lefkowitz, E. J. (2010) · Viruses · doi:10.3390/v2091933 · Cited by 218

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides

Olsen, T. H., Yeşiltaş, B., Marin, F. I., Pertseva, M., García‐Moreno, P. J., Echers, S. G., Overgaard, M. T., Jacobsen, C., Lund, O., Hansen, E. B., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-78319-w · Cited by 226

Ancient hepatitis B viruses from the Bronze Age to the Medieval period

Mühlemann, B., Jones, T. C., Damgaard, P. D. B., Allentoft, M. E., Shevnina, I., Logvin, A., Usmanova, E. R., Панюшкина, И. П., Boldgiv, B., Bazartseren, T., et al. (2018) · Nature · doi:10.1038/s41586-018-0097-z · Cited by 228

Microbial hydrogenases: Primary structure, classification, signatures and phylogeny

Wu, L., & Mandrand‐Berthelot, M. (1993) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1993.tb05870.x · Cited by 218

Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: rate of sequence change and low frequency of inactivating mutations

Balfe, P., Peter Simmonds, K., Ludlam, C. A., Bishop, J. O., & Brown, A. (1990) · Journal of Virology · doi:10.1128/jvi.64.12.6221-6233.1990 · Cited by 218

A flexible method to align large numbers of biological sequences

Taylor, W. R. (1988) · Journal of Molecular Evolution · doi:10.1007/bf02143508 · Cited by 218

Isolation of rat genomic clones encoding subtypes of the alpha 2-adrenergic receptor. Identification of a unique receptor subtype

Lanier, S. M., Downing, S. S., Duzic, E., & Homcy, C. J. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)99248-3 · Cited by 218

Los Alamos sequence analysis package for nucleic acids and proteins

Kanehisa, M. I. (1982) · Nucleic Acids Research · doi:10.1093/nar/10.1.183 · Cited by 218

Creating an Online Dictionary of Abbreviations from MEDLINE

Chang, J. T. (2002) · Journal of the American Medical Informatics Association · doi:10.1197/jamia.m1139 · Cited by 217

Actions in the Eye: Dynamic Gaze Datasets and Learnt Saliency Models for Visual Recognition

Mathe, S., & Sminchisescu, C. (2014) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2014.2366154 · Cited by 217

Molecular cloning and nucleotide sequence of a pestivirus genome, noncytopathic bovine viral diarrhea virus strain SD-1

Deng, R., & Brock, K. V. (1992) · Virology · doi:10.1016/0042-6822(92)90262-n · Cited by 217

Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair

Chen, W., McKenna, A., Schreiber, J., Haeussler, M., Yin, Y., Agarwal, V., Noble, W. S., & Shendure, J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz487 · Cited by 216

A Drosophila gene encoding a protein resembling the human beta-amyloid protein precursor.

Rosen, D. R., Martin-Morris, L. E., Luo, L., & White, K. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.7.2478 · Cited by 222

Show, Control and Tell: A Framework for Generating Controllable and Grounded Captions

Cornia, M., Baraldi, L., & Cucchiara, R. (2019) · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · doi:10.1109/cvpr.2019.00850 · Cited by 213

Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene PairsPreprint

Jareborg, N., Birney, E., & Durbin, R. M. (1999) · Genome Research · doi:10.1101/gr.9.9.815 · Cited by 214

Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence

Laurent, L. C., Chen, J., Ulitsky, I., Müeller, F.-J., Lu, C., Ron Shamir, A., Fan, J., & Loring, J. F. (2008) · Stem Cells · doi:10.1634/stemcells.2007-1081 · Cited by 218

DNA Binding Site Selection of Dimeric and Tetrameric Stat5 Proteins Reveals a Large Repertoire of Divergent Tetrameric Stat5a Binding Sites

Soldaini, E., John, S., Moro, S., Bollenbacher, J., Schindler, U., & Leonard, W. J. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.1.389-401.2000 · Cited by 219

Structure Comparison and Structure Patterns

Eidhammer, I., Jonassen, I., & Taylor, W. R. (2000) · Journal of Computational Biology · doi:10.1089/106652701446152 · Cited by 212

dlk, a putative mammalian homeotic gene differentially expressed in small cell lung carcinoma and neuroendocrine tumor cell line.

Laborda, J., Sausville, E. A., Hoffman, T., & Notario, V. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)53544-4 · Cited by 211

A structural motif in the variant surface glycoproteins of Trypanosoma brucei

Blum, M. L., Down, J. A., Gurnett, A. M., Carrington, M., Turner, M. J., & Wiley, D. C. (1993) · Nature · doi:10.1038/362603a0 · Cited by 213

Molecular cloning of the CD9 antigen. A new family of cell surface proteins.

Boucheix, C., Benoit, P., Frachet, P., Billard, M., Worthington, R. E., Gagnon, J., & Uzan, G. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)52410-8 · Cited by 211

Molecular cloning and nucleotide sequence of cDNA for mRNA of mitochondrial cytochrome P-450(SCC) of bovine adrenal cortex.

Morohashi, K., Fujii-Kuriyama, Y., Okada, Y., Sogawa, K., Hirose, T., Inayama, S., & Omura, T. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.15.4647 · Cited by 207

L1-associated genomic regions are deleted in somatic cells of the healthy human brain

Erwin, J. A., Paquola, A. C. M., Singer, T., Gallina, I., Novotny, M., Quayle, C., Bedrosian, T. A., Alves, F. I. A., Butcher, C. R., Herdy, J. R., et al. (2016) · Nature Neuroscience · doi:10.1038/nn.4388 · Cited by 195

TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction

Chang, J., Tommaso, P. D., & Notredame, C. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu117 · Cited by 214

Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks

Snyder, E. E., & Stormo, G. D. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.3.607 · Cited by 210

Computer-based characterization of epidermal growth factor precursor

Doolittle, R. F., Feng, D. F., & Johnson, M. S. (1984) · Nature · doi:10.1038/307558a0 · Cited by 210

A three‐dimensional model of aromatase cytochrome P450

Graham-Lorence, S. E., Peterson, J. A., Amarneh, B., Simpson, E. R., & White, R. E. (1995) · Protein Science · doi:10.1002/pro.5560040605 · Cited by 211

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

Ghodsi, M., Liu, B., & Pop, M. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-271 · Cited by 208

General methods of sequence comparison

Waterman, M. S. (1984) · Bulletin of Mathematical Biology · doi:10.1016/s0092-8240(84)80054-3 · Cited by 208

The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina

�rnason, �., & Johnsson, E. (1992) · Journal of Molecular Evolution · doi:10.1007/bf00160463 · Cited by 205

Human–Ovine Comparative Sequencing of a 250-kb Imprinted Domain Encompassing the Callipyge (clpg) Locus and Identification of Six Imprinted Transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8Preprint

Charlier, C., Segers, K., Wagenaar, D., Karim, L., Berghmans, S., Jaillon, O., Shay, T. L., Weissenbach, J., Cockett, N., Gyapay, G., et al. (2001) · Genome Research · doi:10.1101/gr.172701 · Cited by 207

Structural RNA Homology Search and Alignment Using Covariance Models

Nawrocki, E. P. (2009) · Open Scholarship Institutional Repository (Washington University in St. Louis) · doi:10.7936/k78050mp · Cited by 207

Privacy preserving error resilient dna searching through oblivious automata

Troncoso-Pastoriza, J. R., Katzenbeisser, S., & Celik, M. U. (2007) · ACM SIGSAC Conference on Computer and Communications Security (CCS) · doi:10.1145/1315245.1315309 · Cited by 202

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction

Yan, R., Xu, D. H., Yang, J., Walker, S. E., & Zhang, Y. (2013) · Scientific Reports · doi:10.1038/srep02619 · Cited by 209

Optimal sequence alignments

Fitch, W. M., & Smith, T. F. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.5.1382 · Cited by 206

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

Barchi, L., Lanteri, S., Portis, E., Acquadro, A., Valè, G., Toppino, L., & Rotino, G. L. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-304 · Cited by 205

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long‐term vegetational stability

Jørgensen, T., Haile, J., Möller, P., ANDREEV, A. A., Boessenkool, S., Rasmussen, M. A., Kienast, F., Coissac, É., Taberlet, P., Brochmann, C., et al. (2011) · Molecular Ecology · doi:10.1111/j.1365-294x.2011.05287.x · Cited by 205

Dynamic molecular monitoring reveals that SWI–SNF mutations mediate resistance to ibrutinib plus venetoclax in mantle cell lymphoma

Agarwal, R., Chan, Y.-C., Tam, C. S. L., Hunter, T., Vassiliadis, D., Teh, C. E., Thijssen, R., Yeh, P. S.-H., Wong, S. Q., Ftouni, S., et al. (2018) · Nature Medicine · doi:10.1038/s41591-018-0243-z · Cited by 207

A Genetic Linkage Map for Zebrafish: Comparative Analysis and Localization of Genes and Expressed SequencesPreprint

Gates, M. A., Kim, L., Egan, E. S., Cardozo, T. J., Sirotkin, H. I., Dougan, S. T., Lashkari, D. A., Abagyan, R. A., Schier, A. F., & Talbot, W. S. (1999) · Genome Research · doi:10.1101/gr.9.4.334 · Cited by 205

PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL

Bramucci, E., Paiardini, A., Bossa, F., & Pascarella, S. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-s4-s2 · Cited by 204

Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron

Reeves, A. R., Wang, G. R., & Salyers, A. A. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.3.643-649.1997 · Cited by 204

Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects

Poczai, P., & Hyvönen, J. (2009) · Molecular Biology Reports · doi:10.1007/s11033-009-9630-3 · Cited by 200

Identification and evolution of dual-topology membrane proteins

Rapp, M., Granseth, E., Seppälä, S., & von HEIJNE, G. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1057 · Cited by 203

A Robust Framework for Microbial Archaeology

Warinner, C., Herbig, A., Mann, A. E., Yates, J. A. F., Weiß, C. L., Burbano, H. A., Orlando, L., & Krause, J. (2017) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-091416-035526 · Cited by 204

Protein Structure Modeling with MODELLER

Webb, B., & Šali, A. (2020) · Methods in molecular biology · doi:10.1007/978-1-0716-0892-0_14 · Cited by 210

Structural and mutational analysis of E2 trans‐activating proteins of papillomaviruses reveals three distinct functional domains.

Giri, I., & Yaniv, M. (1988) · The EMBO Journal · doi:10.1002/j.1460-2075.1988.tb03138.x · Cited by 204

Common evolutionary origin of hepatitis B virus and retroviruses.

Miller, R. H., & Robinson, W. S. (1986) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.83.8.2531 · Cited by 204

Siderophore‐mediated cell signalling in Pseudomonas aeruginosa : divergent pathways regulate virulence factor production and siderophore receptor synthesis

Beare, P. A., For, R. J., Martin, L. W., & Lamont, I. L. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03288.x · Cited by 204

Cloning and sequencing of a human thioredoxin reductase

Gasdaska, P. Y., Gasdaska, J. R., Cochran, S., & Powis, G. (1995) · FEBS Letters · doi:10.1016/0014-5793(95)01003-w · Cited by 205

The statistical distribution of nucleic acid similarities

Smith, T. F., Waterman, M. S., & Burks, C. (1985) · Nucleic Acids Research · doi:10.1093/nar/13.2.645 · Cited by 203

DNA sequence comparison based on amino acid similarity

Hiraoka, S., & Nagai, K. (1995) · doi:10.11234/gi1990.6.152

A method for detecting distant evolutionary relationships between protein or nucleic acid sequences in the presence of deletions or insertions

ELLEMAN, T. C. (1978) · Journal of Molecular Evolution · doi:10.1007/bf01733890 · Cited by 9

An improved method of testing for evolutionary homology

Fitch, W. M. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80258-9 · Cited by 313

The theory and computation of evolutionary distances: Pattern recognition

Sellers, P. H. (1980) · Journal of Algorithms · doi:10.1016/0196-6774(80)90016-4 · Cited by 372

Finding Sequence Similarities

Mushegian, A. R. (2007) · Elsevier eBooks · doi:10.1016/b978-012088794-1/50002-1 · Cited by 1