The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
A general method applicable to the search for similarities in the amino acid sequence of two proteins
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Citations
Cites
Bryson, V., & Vogel, H. J. (1965) · Science · doi:10.1126/science.147.3653.68 · Cited by 1,343
The Amino Acid Sequence of Egg White Lysozyme
Canfield, R. E. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67888-3 · Cited by 739
The Sequence of Amino Acid Residues in Bovine Pancreatic Ribonuclease: Revisions and Confirmations
Smyth, D. G., Stein, W. H., & Moore, S. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)83984-4 · Cited by 567
Amino-Acid Sequence of Sperm Whale Myoglobin
Edmundson, A. B. (1965) · Nature · doi:10.1038/205883a0 · Cited by 396
Meisel, P. (1971) · Food / Nahrung · doi:10.1002/food.19710150234 · Cited by 346
An improved method of testing for evolutionary homology
Fitch, W. M. (1966) · Journal of Molecular Biology · doi:10.1016/s0022-2836(66)80258-9 · Cited by 313
Fine Structure of RNA Codewords Recognized by Bacterial, Amphibian, and Mammalian Transfer RNA
Marshall, R. E., Caskey, C. T., & Nirenberg, M. W. (1967) · Science · doi:10.1126/science.155.3764.820 · Cited by 147
The Structure of Human Hemoglobin
Konigsberg, W. H., & Hill, R. (1962) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)50137-x · Cited by 115
The Structure of Human Hemoglobin
Konigsberg, W. H., Goldstein, J., & Hill, R. (1963) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)67936-0 · Cited by 76
A Comparison of the Amino Acid Sequences of the Cytochrome c of Several Vertebrates.
Margoliash, E., Needleman, S. B., Stewart, J. W., & Takahashi, M. T. (1963) · Acta chemica Scandinavica/Acta chemica Scandinavica. B, Organic chemistry and biochemistry/Acta chemica Scandinavica. A, Physical and inorganic chemistry/Acta chemica Scandinavica. Series B. Organic chemistry and biochemistry/Acta chemica Scandinavica. Series A, Physical and inorganic chemistry · doi:10.3891/acta.chem.scand.17s-0250 · Cited by 25
Self-citation
Research works printed but not linked: 1
- Needleman, 1969, 63, 1127
Cited by
Sorted by citations
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
Katoh, K. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf436 · Cited by 17,027
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
Brooks, B., Bruccoleri, R., Olafson, B. D., States, D., Swaminathan, S., & Karplus, M. (1983) · Journal of Computational Chemistry · doi:10.1002/jcc.540040211 · Cited by 13,736
A comprehensive set of sequence analysis programs for the VAX
Devereux, J., Haeberli, P. E., & Smithies, O. (1984) · Nucleic Acids Research · doi:10.1093/nar/12.1part1.387 · Cited by 14,222
Improved tools for biological sequence comparison.
Pearson, W. R., & Lipman, D. J. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.8.2444 · Cited by 11,227
VSEARCH: a versatile open source tool for metagenomics
(2016) · doi:10.7717/peerj.2584 · Cited by 10,773
Database resources of the National Center for Biotechnology Information: update
Wheeler, D. L. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,695
Identification of common molecular subsequences
Smith, T. F., & Waterman, M. S. (1981) · Journal of Molecular Biology · doi:10.1016/0022-2836(81)90087-5 · Cited by 9,962
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Katoh, K., Rozewicki, J., & Yamada, K. D. (2019) · Briefings in Bioinformatics · doi:10.1093/bib/bbx108 · Cited by 8,909
REFMAC 5 for the refinement of macromolecular crystal structures
Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M., Long, F., & Vagin, A. A. (2011) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444911001314 · Cited by 8,415
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., & Glöckner, F. O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm864 · Cited by 6,682
Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade
Le, D. T., Durham, J. N., Smith, K. N., Wang, H., Bartlett, B. R., Aulakh, L. K., Lu, S., Kemberling, H., Wilt, C., Luber, B. S., et al. (2017) · Science · doi:10.1126/science.aan6733 · Cited by 6,645
LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery
Laskowski, R., & Swindells, M. (2011) · Journal of Chemical Information and Modeling · doi:10.1021/ci200227u · Cited by 6,159
Survey of Clustering Algorithms
Xu, R., & Wunsch, D. C. (2005) · IEEE Transactions on Neural Networks · doi:10.1109/tnn.2005.845141 · Cited by 6,399
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Ye, J., Coulouris, G., Zaretskaya, I., Cutcutache, I., Rozen, S., & Madden, T. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-134 · Cited by 6,369
Talavera, G., & Castresana, J. (2007) · Systematic Biology · doi:10.1080/10635150701472164 · Cited by 5,599
Multiple sequence alignment with hierarchical clustering.
Corpet, F. (1988) · Nucleic Acids Research · doi:10.1093/nar/16.22.10881 · Cited by 5,575
Schoch, C. L., Seifert, K. A., Huhndorf, S. M., Robert, V., Spouge, J. L., Lévesque, C. A., Chen, W., Bolchacova, E., Voigt, K., Crous, P. W., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1117018109 · Cited by 5,404
I-TASSER server for protein 3D structure prediction
Zhang, Y. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-40 · Cited by 5,124
MAFFT version 5: improvement in accuracy of multiple sequence alignment
Katoh, K., Kuma, K., Toh, H., & Miyata, T. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki198 · Cited by 5,063
Comparative Protein Structure Modeling Using Modeller
Eswar, N., Webb, B., Martı́-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M., Pieper, U., & Šali, A. (2006) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0506s15 · Cited by 4,618
Comparative Protein Structure Modeling Using MODELLER
Webb, B., & Šali, A. (2016) · Current Protocols in Bioinformatics · doi:10.1002/cpbi.3 · Cited by 4,404
TM-align: a protein structure alignment algorithm based on the TM-score
Zhang, Y. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki524 · Cited by 3,774
Rapid and sensitive protein similarity searches
Lipman, D. J., & Pearson, W. R. (1985) · Science · doi:10.1126/science.2983426 · Cited by 4,033
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining
Chen, C., Wu, Y., Li, J., Wang, X., Zeng, Z., Xu, J., Liu, Y., Feng, J., Chen, H., He, Y., et al. (2023) · Molecular Plant · doi:10.1016/j.molp.2023.09.010 · Cited by 4,112
Recent developments in the MAFFT multiple sequence alignment program
Katoh, K., & Toh, H. (2008) · Briefings in Bioinformatics · doi:10.1093/bib/bbn013 · Cited by 3,629
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR ampliconsPreprint
Haas, B. J., Gevers, D., Earl, A. M., Feldgarden, M., Ward, D. V., Giannoukos, G., Ciulla, D., Tabbaa, D., Highlander, S. K., Sodergren, E. J., et al. (2011) · Genome Research · doi:10.1101/gr.112730.110 · Cited by 3,527
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Liao, Y., Smyth, G. K., & Shi, W. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt214 · Cited by 3,064
CLUSTAL: a package for performing multiple sequence alignment on a microcomputer
Higgins, D. G., & Sharp, P. M. (1988) · Gene · doi:10.1016/0378-1119(88)90330-7 · Cited by 3,394
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Henrissat, B. (1991) · Biochemical Journal · doi:10.1042/bj2800309 · Cited by 3,188
Comparative Protein Structure Modeling of Genes and Genomes
Martí-Renom, M. A., Stuart, A. C., Fiser, A., Sánchez, R., Melo, F., & Šali, A. (2000) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.29.1.291 · Cited by 3,169
A review of central 5-HT receptors and their function
Barnes, N. M., & Sharp, T. (1999) · Neuropharmacology · doi:10.1016/s0028-3908(99)00010-6 · Cited by 3,211
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Pruesse, E., Peplies, J., & Glöckner, F. (2012) · Bioinform. · doi:10.1093/bioinformatics/bts252 · Cited by 2,989
Multiple Sequence Alignment Using ClustalW and ClustalX
Thompson, J., Gibson, T. J., & Higgins, D. G. (2002) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0203s00 · Cited by 2,989
SignalP 6.0 predicts all five types of signal peptides using protein language models
Teufel, F., Armenteros, J. J. A., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, K. D., Winther, O., Brunak, S., von HEIJNE, G., & Nielsen, H. (2022) · Nature Biotechnology · doi:10.1038/s41587-021-01156-3 · Cited by 3,088
Predicting the Functional Effect of Amino Acid Substitutions and Indels
Choi, Y., Sims, G. E., Murphy, S., Miller, J. R., & Chan, A. P. (2012) · PLoS ONE · doi:10.1371/journal.pone.0046688 · Cited by 2,890
A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
Bowie, J. U., Lüthy, R., & Eisenberg, D. (1991) · Science · doi:10.1126/science.1853201 · Cited by 2,851
Comparative Protein Structure Modeling Using MODELLER
Eswar, N., Webb, B., Martı́-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M., Pieper, U., & Šali, A. (2007) · Current Protocols in Protein Science · doi:10.1002/0471140864.ps0209s50 · Cited by 2,874
CATH – a hierarchic classification of protein domain structures
Orengo, C., Michie, A. D., Jones, S., Jones, D., Swindells, M. B., & Thornton, J. M. (1997) · Structure · doi:10.1016/s0969-2126(97)00260-8 · Cited by 2,658
A guided tour to approximate string matching
Navarro, G. (2001) · ACM Computing Surveys · doi:10.1145/375360.375365 · Cited by 2,661
Repetitive zinc‐binding domains in the protein transcription factor IIIA from Xenopus oocytes.
Miller, J., McLachlan, A., & Klug, A. (1985) · The EMBO Journal · doi:10.1002/j.1460-2075.1985.tb03825.x · Cited by 2,476
GMAP: A genomic mapping and alignment program for mRNA and EST sequences
Wu, T. D., & Watanabe, C. K. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti310 · Cited by 2,354
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
Ratnasingham, S., & Hebert, P. D. N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0066213 · Cited by 2,301
PANDAseq: paired-end assembler for Illumina sequences
Masella, A. P., Bartram, A. K., Truszkowski, J. M., Brown, D. G., & Neufeld, J. D. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-31 · Cited by 2,132
Duplicate Record Detection: A Survey
Elmagarmid, A. K., Ipeirotis, P. G., & Verykios, V. S. (2006) · IEEE Transactions on Knowledge and Data Engineering · doi:10.1109/tkde.2007.250581 · Cited by 2,002
[5] Rapid and sensitive sequence comparison with FASTP and FASTA
Pearson, W. R. (1990) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(90)83007-v · Cited by 1,934
SignalP 6.0 predicts all five types of signal peptides using protein language models
Teufel, F., Armenteros, J. J. A., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, K. D., Winther, O., Brunak, S., von HEIJNE, G., & Nielsen, H. (2022) · Repository for Publications and Research Data (ETH Zurich) · doi:10.3929/ethz-b-000524414 · Cited by 1,905
Progressive sequence alignment as a prerequisitetto correct phylogenetic trees
Feng, D.-F., & Doolittle, R. F. (1987) · Journal of Molecular Evolution · doi:10.1007/bf02603120 · Cited by 1,883
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
Tatusova, T. A., & Madden, T. L. (1999) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1999.tb13575.x · Cited by 1,789
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
Sandelin, A. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh012 · Cited by 1,815
Protein Structure Modeling with MODELLER
Eswar, N., Eramian, D., Webb, B., Shen, M., & Šali, A. (2008) · Methods in molecular biology · doi:10.1007/978-1-60327-058-8_8 · Cited by 1,781
SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation
Muhire, B. M., Varsani, A., & Martin, D. P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0108277 · Cited by 1,774
An improved algorithm for matching biological sequences
Gotoh, O. (1982) · Journal of Molecular Biology · doi:10.1016/0022-2836(82)90398-9 · Cited by 1,726
Modeller: Generation and Refinement of Homology-Based Protein Structure Models
Fiser, A., & Šali, A. (2003) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(03)74020-8 · Cited by 1,708
CRISPResso2 provides accurate and rapid genome editing sequence analysis
Clement, K., Rees, H. A., Canver, M. C., Gehrke, J. M., Farouni, R., Hsu, J. Y., Cole, M. A., Liu, D. R., Joung, J. K., Bauer, D. E., et al. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0032-3 · Cited by 1,656
PISCES: a protein sequence culling server
Wang, G., & Dunbrack, R. L. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg224 · Cited by 1,664
EXPERT SYSTEMS WITH APPLICATIONS
Communication, S., Been-chian Chien, A., Jung Yi Lin, A., Tzung-pei Hong, B., & Com/locate/eswa, W. E. (2004) · Expert Systems with Applications · doi:10.1016/j.eswa.2004.10.010 · Cited by 1,670
Cloning, sequence and expression of two distinct human interleukin-1 complementary DNAs
March, C. J., Mosley, B., Larsen, A., Cerretti, D. P., Braedt, G., Price, V. L., Gillis, S. A., Henney, C. S., Kronheim, S. R., Grabstein, K. H., et al. (1985) · Nature · doi:10.1038/315641a0 · Cited by 1,559
[22] Using CLUSTAL for multiple sequence alignments
Higgins, D. G., Thompson, J., & Gibson, T. J. (1996) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(96)66024-8 · Cited by 1,571
Rapid similarity searches of nucleic acid and protein data banks.
Wilbur, W. J., & Lipman, D. J. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.3.726 · Cited by 1,546
Karlin, S., & Altschul, S. F. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.6.2264 · Cited by 1,535
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Jiang, H., Lei, R., Ding, S., & Zhu, S. (2014) · BMC Bioinformatics · doi:10.1186/1471-2105-15-182 · Cited by 1,525
Shukla, S., Mishra, B., Avashthi, H., & Chandra, M. (2021) · Elsevier eBooks · doi:10.1016/b978-0-323-89775-4.00003-1 · Cited by 1,514
Enhanced genome annotation using structural profiles in the program 3D-PSSM 1 1Edited by J. Thornton
Kelley, L. A., MacCallum, R. M., & Sternberg, M. J. E. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3741 · Cited by 1,464
Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N. W., Zwart, P. H., Hung, L.-W., Read, R. J., & Adams, P. D. (2008) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s090744490705024x · Cited by 1,462
Multiple Alignment of DNA Sequences with MAFFT
Katoh, K., Asimenos, G., & Toh, H. (2009) · Methods in molecular biology · doi:10.1007/978-1-59745-251-9_3 · Cited by 1,436
Adaptive Computation and Machine Learning
(2012) · The MIT Press eBooks · doi:10.7551/mitpress/8291.003.0026 · Cited by 1,455
Analyzing and Visualizing State Sequences in R with TraMineR
Gabadinho, A., Ritschard, G., Müller, N. S., & Studer, M. (2011) · Journal of Statistical Software · doi:10.18637/jss.v040.i04 · Cited by 1,364
The PSIPRED Protein Analysis Workbench: 20 years on
Buchan, D. W. A., & Jones, D. T. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz297 · Cited by 1,390
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Huse, S. M., Welch, D. M., Morrison, H. G., & Sogin, M. L. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02193.x · Cited by 1,346
Profile analysis: detection of distantly related proteins.
Gribskov, M., McLachlan, A. D., & Eisenberg, D. (1987) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.84.13.4355 · Cited by 1,325
SARS-CoV-2-reactive T cells in healthy donors and patients with COVID-19
Braun, J., Loyal, L., Frentsch, M., Wendisch, D., Georg, P., Kurth, F., Hippenstiel, S., Dingeldey, M., Kruse, B., Fauchere, F., et al. (2020) · Nature · doi:10.1038/s41586-020-2598-9 · Cited by 1,310
Accuracy and quality of massively parallel DNA pyrosequencing
Huse, S. M., Huber, J. A., Morrison, H. G., Sogin, M. L., & Welch, D. B. M. (2007) · Genome biology · doi:10.1186/gb-2007-8-7-r143 · Cited by 1,280
Kunin, V., Engelbrektson, A., Ochman, H., & Hugenholtz, P. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02051.x · Cited by 1,280
Applied bioinformatics for the identification of regulatory elements
Wasserman, W. W., & Sandelin, A. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1315 · Cited by 1,233
Miyazawa, S., & Jernigan, R. L. (1996) · Journal of Molecular Biology · doi:10.1006/jmbi.1996.0114 · Cited by 1,223
Fast and sensitive multiple sequence alignments on a microcomputer
Higgins, D. G., & Sharp, P. M. (1989) · Computer applications in the biosciences · doi:10.1093/bioinformatics/5.2.151 · Cited by 1,220
Chaisson, M., & Tesler, G. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-238 · Cited by 1,206
Identification of four conserved motifs among the RNA‐dependent polymerase encoding elements.
Poch, O., Sauvaget, I., Delarue, M. H., & Tordo, N. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb08565.x · Cited by 1,202
Shi, J., Blundell, T. L., & Mizuguchi, K. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.4762 · Cited by 1,199
Genome evolution and adaptation in a long-term experiment with Escherichia coli
Barrick, J. E., Yu, D. S., Yoon, S. H., Jeong, H., Oh, T. K., Schneider, D., Lenski, R. E., & Kim, J. F. (2009) · Nature · doi:10.1038/nature08480 · Cited by 1,184
[47] Establishing homologies in protein sequences
Dayhoff, M. O., Barker, W. C., & Hunt, L. T. (1983) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(83)91049-2 · Cited by 1,169
Computational Molecular Evolution
Yang, Z. (2006) · doi:10.1093/acprof:oso/9780198567028.001.0001 · Cited by 1,152
A global averaging method for dynamic time warping, with applications to clustering
Petitjean, F., Ketterlin, A., & Gançarski, P. (2010) · Pattern Recognition · doi:10.1016/j.patcog.2010.09.013 · Cited by 1,143
obitools : a unix ‐inspired software package for DNA metabarcoding
Boyer, F., Mercier, C., Bonin, A., Bras, Y. L., Taberlet, P., & Coissac, É. (2015) · Molecular Ecology Resources · doi:10.1111/1755-0998.12428 · Cited by 1,204
Comparative Protein Structure Modeling Using MODELLER
Webb, B., & Šali, A. (2014) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0506s47 · Cited by 1,156
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
Brudno, M., Do, C. B., Cooper, G. M., Kim, M. F., Davydov, E., Program, N. C. S., Green, E. D., Sidow, A., & Batzoglou, S. (2003) · Genome Research · doi:10.1101/gr.926603 · Cited by 1,115
ProbCons: Probabilistic consistency-based multiple sequence alignmentPreprint
Do, C. B., Mahabhashyam, M. S. P., Brudno, M., & Batzoglou, S. (2005) · Genome Research · doi:10.1101/gr.2821705 · Cited by 1,103
Ashley, E. A. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.86 · Cited by 1,116
(2006) · Technical Report Series 936 · doi:10.2471/trs.02.935 · Cited by 1,101
Evaluation of comparative protein modeling by M ODELLER
Šali, A., Potterton, L., Feng, Y., van Vlijmen, H., & Karplus, M. (1995) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.340230306 · Cited by 1,088
Calculation of conformational ensembles from potentials of mena force
Sippl, M. J. (1990) · Journal of Molecular Biology · doi:10.1016/s0022-2836(05)80269-4 · Cited by 1,068
Wharton, K. A., Johansen, K. M., Xu, T., & Artavanis‐Tsakonas, S. (1985) · Cell · doi:10.1016/0092-8674(85)90229-6 · Cited by 1,062
Protein database searches using compositionally adjusted substitution matrices
Altschul, S. F., Wootton, J. C., Gertz, E. M., Agarwala, R., Morgulis, A. O., Schäffer, A. A., & Yu, Y. (2005) · FEBS Journal · doi:10.1111/j.1742-4658.2005.04945.x · Cited by 1,058
Bland, C., Ramsey, T. L., Sabree, F., Lowe, M., Brown, K., Kyrpides, N. C., & Hugenholtz, P. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-209 · Cited by 1,038
Parallelization of MAFFT for large-scale multiple sequence alignments
Nakamura, T., Yamada, K. D., Tomii, K., & Katoh, K. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty121 · Cited by 1,043
Database resources of the National Center for Biotechnology Information
Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., Church, D. M., DiCuccio, M., Edgar, R., Federhen, S., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm1000 · Cited by 1,007
Yang, J., Roy, A., & Zhang, Y. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt447 · Cited by 1,035
Metadata
- Authors
- Needleman, S. B., & Wunsch, C. D.
- Affiliations
- Northwestern University (US)
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 1970-03
- Volume
- 48
- Issue
- 3
- Pages
- 443-453
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2074231493
- Cited by
- 11,288
- References
- 11
- Citations by year
- 2026: 212 · 2025: 270 · 2024: 379 · 2023: 369 · 2022: 358 · 2021: 420 · 2020: 415 · 2019: 356 · 2018: 403 · 2017: 359 · 2016: 380 · 2015: 383 · 2014: 436 · 2013: 441 · 2012: 423
- FWCI
- 4.31
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fractal and DNA sequence analysis
- Physical Sciences › Mathematics › Theoretical Computer Science › Algorithms and Data Compression
- Keywords
- protein sequence comparison, amino acid sequence similarity, protein homology, protein evolution, dynamic programming, two-dimensional arrays, computational algorithms
- MeSH terms
- Amino Acid Sequence, Computers, Hemoglobins, Methods, Muramidase, Myoglobin, Probability, Ribonucleases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review