Cited by 71Origins and Evolution of LifeHistory and advancements in chemistryMicrobial metabolism and enzyme function

The elements of life: A biocentric tour of the periodic table

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Kaleigh A. Remick, John D. Helmann·2023·Advances in Microbial Physiology

Abstract

Living systems are built from a small subset of the atomic elements, including the bulk macronutrients (C,H,N,O,P,S) and ions (Mg,K,Na,Ca) together with a small but variable set of trace elements (micronutrients). Here, we provide a global survey of how chemical elements contribute to life. We define five classes of elements: those that are (i) essential for all life, (ii) essential for many organisms in all three domains of life, (iii) essential or beneficial for many organisms in at least one domain, (iv) beneficial to at least some species, and (v) of no known beneficial use. The ability of cells to sustain life when individual elements are absent or limiting relies on complex physiological and evolutionary mechanisms (elemental economy). This survey of elemental use across the tree of life is encapsulated in a web-based, interactive periodic table that summarizes the roles chemical elements in biology and highlights corresponding mechanisms of elemental economy.

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  • The central role of K+ and Mg2+ as bulk ions, and of Mg2+ in enzyme catalysis, places these two elements among the dozen or so that are universally essential for life.

    “The central role of K+ and Mg2+ as bulk ions, and of Mg2+ in enzyme catalysis, places these two elements among the dozen or so that are universally essential for life.9,44”

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  1. Abdelnour SA, Abd El-Hack ME, Khafaga AF, Noreldin AE, Arif M, Chaudhry MT, Losacco C, Abdeen A, & Abdel-Daim MM (2019). Impacts of rare earth elements on animal health and production: Highlights of cerium and lanthanum. Science of The Total Environment, 672, 1021– 1032. https://doi.org/ 10.1016/j.scitotenv.2019.02.270 30999219 · DOI
  2. Aihemaiti A, Gao Y, Meng Y, Chen X, Liu J, Xiang H, Xu Y, & Jiang J (2020). Review of plant-vanadium physiological interactions, bioaccumulation, and bioremediation of vanadium-contaminated sites. Science of The Total Environment, 712, 135637. 10.1016/j.scitotenv.2019.135637 31810710 · DOI
  3. Akanuma G, Kobayashi A, Suzuki S, Kawamura F, Shiwa Y, Watanabe S, Yoshikawa H, Hanai R, & Ishizuka M (2014). Defect in the formation of 70S ribosomes caused by lack of ribosomal protein L34 can be suppressed by magnesium. Journal of Bacteriology, 196(22), 3820– 3830. 10.1128/JB.01896-14 25182490 PMC4248831 · DOI
  4. Alejandro S, Höller S, Meier B, & Peiter E (2020). Manganese in Plants: From Acquisition to Subcellular Allocation. Frontiers in Plant Science, 11, 300– 300. 10.3389/fpls.2020.00300 32273877 PMC7113377 · DOI · Paper page
  5. Alfano M, & Cavazza C (2020). Structure, function, and biosynthesis of nickel-dependent enzymes. Protein Science, 29(5), 1071– 1089. 10.1002/pro.3836 32022353 PMC7184782 · DOI
  6. Allen JF, Thake B, & Martin WF (2019). Nitrogenase Inhibition Limited Oxygenation of Earth’s Proterozoic Atmosphere. Trends in Plant Science, 24(11), 1022– 1031. https://doi.org/ 10.1016/j.tplants.2019.07.007 31447302 · DOI
  7. Alterio V, Langella E, De Simone G, & Monti SM (2015). Cadmium-Containing Carbonic Anhydrase CDCA1 in Marine Diatom Thalassiosira weissflogii. Marine Drugs, 13(4), 1688– 1697. https://www.mdpi.com/1660-3397/13/4/1688 25815892 PMC4413181
  8. Amin SA, Parker MS, & Armbrust EV (2012). Interactions between Diatoms and Bacteria. Microbiology and Molecular Biology Reviews, 76(3), 667– 684. https://doi.org/doi: 10.1128/MMBR.00007-12 22933565 PMC3429620 · DOI
  9. Ammendola S, Ciavardelli D, Consalvo A, & Battistoni A (2020). Cobalt can fully recover the phenotypes related to zinc deficiency in Salmonella Typhimurium. Metallomics, 12(12), 2021– 2031. 10.1039/d0mt00145g 33165471 · DOI
  10. Andreini C, Bertini I, & Rosato A (2009). Metalloproteomes: A Bioinformatic Approach. Accounts of Chemical Research, 42(10), 1471– 1479. 10.1021/ar900015x 19697929 · DOI
  11. Andrews SC (2011). Making DNA without iron - induction of a manganese-dependent ribonucleotide reductase in response to iron starvation. Molecular Microbiology, 80(2), 286– 289. 10.1111/j.1365-2958.2011.07594.x 21371140 · DOI
  12. Aoun A, Darwiche F, Al Hayek S, & Doumit J (2018). The Fluoride Debate: The Pros and Cons of Fluoridation. Preventive Nutrition and Food Science, 23(3), 171– 180. 10.3746/pnf.2018.23.3.171 30386744 PMC6195894 · DOI
  13. Appia-Ayme C, Little R, Chandra G, de Oliveira Martins C, Bueno Batista M, & Dixon R (2022). Interactions between paralogous bacterial enhancer binding proteins enable metal-dependent regulation of alternative nitrogenases in Azotobacter vinelandii. Molecular Microbiology, 10.1111/mmi.14955 PMC9542535 35718936 · DOI
  14. Arakawa Y, Saito T, Saito H, Kakegawa T, & Kobayashi H (2000). Ethylene glycol bis (beta-aminoethyl ether)-N,N,N',N'-tetraacetic acid (EGTA) inhibits the growth of Escherichia coli at alkaline pH. Journal of General and Applied Microbiology, 46(3), 127– 131. 10.2323/jgam.46.127 12483586 · DOI
  15. Arendsen LP, Thakar R, & Sultan AH (2019). The Use of Copper as an Antimicrobial Agent in Health Care, Including Obstetrics and Gynecology. Clinical Microbiology Reviews, 32(4), e00125– 00118. https://doi.org/doi: 10.1128/CMR.00125-18 31413046 PMC6730497 · DOI
  16. Ascenzi P, Bettinelli M, Boffi A, Botta M, De Simone G, Luchinat C, Marengo E, Mei H, & Aime S (2020). Rare earth elements (REE) in biology and medicine. Rendiconti Lincei. Scienze Fisiche e Naturali, 31(3), 821– 833. 10.1007/s12210-020-00930-w · DOI
  17. Atashgahi S, Liebensteiner MG, Janssen DB, Smidt H, Stams AJM, & Sipkema D (2018). Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds. Frontiers in Microbiology, 9, 3079. 10.3389/fmicb.2018.03079 30619161 PMC6299022 · DOI
  18. Atwal PS, & Scaglia F (2016). Molybdenum cofactor deficiency. Molecular Genetics and Metabolism, 117(1), 1– 4. https://doi.org/ 10.1016/j.ymgme.2015.11.010 26653176 · DOI
  19. Auffinger P, Ennifar E, & D'Ascenzo L (2020). Deflating the RNA Mg(2+) bubble. Stereochemistry to the rescue! RNA. 10.1261/rna.076067.120 PMC7901845 33268500 · DOI · Paper page
  20. Avery SV (1995). Caesium accumulation by microorganisms: uptake mechanisms, cation competition, compartmentalization and toxicity. Journal of Industrial Microbiology and Biotechnology, 14(2), 76– 84. 10.1007/bf01569888 7766213 · DOI
  21. Azua-Bustos A, Urrejola C, & Vicuña R (2012). Life at the dry edge: Microorganisms of the Atacama Desert. FEBS Letters, 586(18), 2939– 2945. https://doi.org/ 10.1016/j.febslet.2012.07.025 22819826 · DOI
  22. Baker JL, Sudarsan N, Weinberg Z, Roth A, Stockbridge RB, & Breaker RR (2012). Widespread Genetic Switches and Toxicity Resistance Proteins for Fluoride. Science, 335(6065), 233– 235. https://doi.org/doi: 10.1126/science.1215063 22194412 PMC4140402 · DOI
  23. Balachandran RC, Mukhopadhyay S, McBride D, Veevers J, Harrison FE, Aschner M, Haynes EN, & Bowman AB (2020). Brain manganese and the balance between essential roles and neurotoxicity. Journal of Biological Chemistry, 295(19), 6312– 6329. 10.1074/jbc.REV119.009453 32188696 PMC7212623 · DOI
  24. Ball P. (2017). Water is an active matrix of life for cell and molecular biology. Proceedings of the National Academy of Sciences of the United States of America, 114(51), 13327– 13335. 10.1073/pnas.1703781114 28592654 PMC5754758 · DOI · Paper page
  25. Bandmann O, Weiss KH, & Kaler SG (2015). Wilson's disease and other neurological copper disorders. The Lancet Neurology, 14(1), 103– 113. https://doi.org/ 10.1016/S1474-4422(14)70190-5 25496901 PMC4336199 · DOI
  26. Banerjee A, & Roychoudhury A (2019). Structural introspection of a putative fluoride transporter in plants. 3 Biotech, 9(3), 103. 10.1007/s13205-019-1629-4 PMC6386761 30800614 · DOI
  27. Banik A, Vadivel M, Mondal M, & Sakthivel N (2022). Molecular Mechanisms that Mediate Microbial Synthesis of Metal Nanoparticles. In Hurst CJ (Ed.), Microbial Metabolism of Metals and Metalloids (pp. 135– 166). Springer International Publishing. 10.1007/978-3-030-97185-4_6 · DOI
  28. Bar-On YM, & Milo R (2019). The global mass and average rate of rubisco. Proceedings of the National Academy of Sciences of the United States of America, 116(10), 4738– 4743. 10.1073/pnas.1816654116 30782794 PMC6410859 · DOI
  29. Barber J. (2016). Mn(4)Ca Cluster of Photosynthetic Oxygen-Evolving Center: Structure, Function and Evolution. Biochemistry, 55(42), 5901– 5906. 10.1021/acs.biochem.6b00794 27704798 · DOI
  30. Barwinska-Sendra A, & Waldron KJ (2017). The role of intermetal competition and mis-metalation in metal toxicity. Advances in microbial physiology, 70, 315– 379. 28528650
  31. Baudouin-Cornu P, Surdin-Kerjan Y, Marliere P, & Thomas D (2001). Molecular evolution of protein atomic composition. Science, 293(5528), 297– 300. 10.1126/science.1061052 11452124 · DOI
  32. Baumgartner JT, & McKinnie SMK (2021). Investigating the Role of Vanadium-Dependent Haloperoxidase Enzymology in Microbial Secondary Metabolism and Chemical Ecology. mSystems, 6(4), e0078021– e0078021. 10.1128/mSystems.00780-21 34427499 PMC8407465 · DOI
  33. Becker JS, Matusch A, & Wu B (2014). Bioimaging mass spectrometry of trace elements – recent advance and applications of LA-ICP-MS: A review. Analytica Chimica Acta, 835, 1– 18. https://doi.org/ 10.1016/j.aca.2014.04.048 24952624 · DOI
  34. Bellotti D, Rowińska-Żyrek M, & Remelli M (2021). How Zinc-Binding Systems, Expressed by Human Pathogens, Acquire Zinc from the Colonized Host Environment: A Critical Review on Zincophores. Current Medicinal Chemistry, 28(35), 7312– 7338. 10.2174/1389200222666210514012945 33992060 PMC9175090 · DOI
  35. Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, & Rabinowitz JD (2009). Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nature Chemical Biology, 5(8), 593– 599. 10.1038/nchembio.186 19561621 PMC2754216 · DOI · Paper page
  36. Biard T. (2022). Diversity and ecology of Radiolaria in modern oceans. Environmental Microbiology, 24(5), 2179– 2200. 10.1111/1462-2920.16004 35412019 PMC9322464 · DOI
  37. Biswas R, & Sarkar A (2022). Microbes: Key Players of the Arsenic Biogeochemical Cycle. In Hurst CJ (Ed.), Microbial Metabolism of Metals and Metalloids (pp. 197– 221). Springer International Publishing. 10.1007/978-3-030-97185-4_8 · DOI
  38. Blaby-Haas CE, & Merchant SS (2013). Iron sparing and recycling in a compartmentalized cell. Current opinion in microbiology, 16(6), 677– 685. 23962818 PMC3842415
  39. Blanc-Potard AB, & Groisman EA (2021). How Pathogens Feel and Overcome Magnesium Limitation When in Host Tissues. Trends in Microbiology, 29(2), 98– 106. 10.1016/j.tim.2020.07.003 32807623 PMC7855738 · DOI
  40. Blondeau M, Sachse M, Boulogne C, Gillet C, Guigner J-M, Skouri-Panet F, Poinsot M, Ferard C, Miot J, & Benzerara K (2018). Amorphous Calcium Carbonate Granules Form Within an Intracellular Compartment in Calcifying Cyanobacteria [Original Research]. Frontiers in Microbiology, 9, 1768. 10.3389/fmicb.2018.01768 30127775 PMC6087745 · DOI
  41. Boden JS, Konhauser KO, Robbins LJ, & Sánchez-Baracaldo P (2021). Timing the evolution of antioxidant enzymes in cyanobacteria. Nature Communications, 12(1), 4742. 10.1038/s41467-021-24396-y PMC8346466 34362891 · DOI
  42. Bojórquez-Quintal E, Escalante-Magaña C, Echevarría-Machado I, & Martínez-Estévez M (2017). Aluminum, a Friend or Foe of Higher Plants in Acid Soils [Review]. Frontiers in Plant Science, 8. 10.3389/fpls.2017.01767 PMC5643487 29075280 · DOI
  43. Bolaños L, Lukaszewski K, Bonilla I, & Blevins D (2004). Why boron? Plant Physiology and Biochemistry, 42(11), 907– 912. https://doi.org/ 10.1016/j.plaphy.2004.11.002 15694285 · DOI
  44. Bonilla I, Garcia-Gonzalez M, & Mateo P (1990). Boron requirement in cyanobacteria: its possible role in the early evolution of photosynthetic organisms. Plant Physiology, 94(4), 1554– 1560. 10.1104/pp.94.4.1554 16667889 PMC1077420 · DOI
  45. Bosma EF, Rau MH, van Gijtenbeek LA, & Siedler S (2021). Regulation and distinct physiological roles of manganese in bacteria. FEMS Microbiology Reviews, 45(6). 10.1093/femsre/fuab028 PMC8632737 34037759 · DOI · Paper page
  46. Bradbury J. (2004). Nature's nanotechnologists: unveiling the secrets of diatoms. PLoS Biology, 2(10), e306. 10.1371/journal.pbio.0020306 15486572 PMC521728 · DOI
  47. Bragg JG, Quigg A, Raven JA, & Wagner A (2012). Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology, 21(10), 2480– 2487. 10.1111/j.1365-294X.2012.05529.x 22439830 · DOI
  48. Brault A, Mourer T, & Labbé S (2015). Molecular basis of the regulation of iron homeostasis in fission and filamentous yeasts. IUBMB life, 67(11), 801– 815. 26472434
  49. Bray MS, Lenz TK, Haynes JW, Bowman JC, Petrov AS, Reddi AR, Hud NV, Williams LD, & Glass JB (2018). Multiple prebiotic metals mediate translation. Proceedings of the National Academy of Sciences of the United States of America, 115(48), 12164– 12169. 10.1073/pnas.1803636115 30413624 PMC6275528 · DOI · Paper page
  50. Briat J-F, Dubos C, & Gaymard F (2015). Iron nutrition, biomass production, and plant product quality. Trends in Plant Science, 20(1), 33– 40. 25153038
  51. Brochier-Armanet C, Talla E, & Gribaldo S (2008). The Multiple Evolutionary Histories of Dioxygen Reductases: Implications for the Origin and Evolution of Aerobic Respiration. Molecular Biology and Evolution, 26(2), 285– 297. 10.1093/molbev/msn246 18974088 · DOI
  52. Broder UN, Jaeger T, & Jenal U (2016). LadS is a calcium-responsive kinase that induces acute-to-chronic virulence switch in Pseudomonas aeruginosa. Nature Microbiology, 2, 16184. 10.1038/nmicrobiol.2016.184 27775685 · DOI
  53. Brovarone AV, Butch CJ, Ciappa A, Cleaves HJ, Elmaleh A, Faccenda M, Feineman M, Hermann J, Nestola F, Cordone A, & Giovannelli D (2020). Let there be water: How hydration/dehydration reactions accompany key Earth and life processes. American Mineralogist, 105(8), 1152– 1160. https://doi.org/doi: 10.2138/am-2020-7380 · DOI
  54. Broyer TC, Carlton AB, Johnson CM, & Stout PR (1954). Chlorine-A Micronutrient Element for Higher Plants. Plant Physiology, 29(6), 526– 532. 10.1104/pp.29.6.526 16654714 PMC540579 · DOI
  55. Bruna N, Galliani E, Oyarzún P, Bravo D, Fuentes F, & Pérez-Donoso JM (2022). Biomineralization of lithium nanoparticles by Li-resistant Pseudomonas rodhesiae isolated from the Atacama salt flat. Biological Research, 55(1), 12. 10.1186/s40659-022-00382-6 35296351 PMC8925236 · DOI
  56. Bruna RE, Kendra CG, & Pontes MH (2022). Coordination of Phosphate and Magnesium Metabolism in Bacteria. Advances in Experimental Medicine and Biology, 1362, 135– 150. 10.1007/978-3-030-91623-7_12 35288878 · DOI
  57. Bruni GN, Weekley RA, Dodd BJT, & Kralj JM (2017). Voltage-gated calcium flux mediates Escherichia coli mechanosensation. Proceedings of the National Academy of Sciences, 114(35), 9445– 9450. https://doi.org/doi: 10.1073/pnas.1703084114 PMC5584419 28808010 · DOI
  58. Bruyneel B, vande Woestyne M, & Verstraete W (1989). Lactic acid bacteria: Micro-organisms able to grow in the absence of available iron and copper. Biotechnology Letters, 11(6), 401– 406. 10.1007/BF01089472 · DOI
  59. Buchner MR (2020). Beryllium-associated diseases from a chemist’s point of view. Zeitschrift für Naturforschung B, 75(5), 405– 412. https://doi.org/doi: 10.1515/znb-2020-0006 · DOI
  60. Buessecker S, Palmer M, Lai D, Dimapilis J, Mayali X, Mosier D, Jiao JY, Colman DR, Keller LM, St John E, Miranda M, Gonzalez C, Gonzalez L, Sam C, Villa C, Zhuo M, Bodman N, Robles F, Boyd ES, … Dodsworth JA (2022). An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea. Nature Communication, 13(1), 3773. 10.1038/s41467-022-31452-8 PMC9246946 35773279 · DOI
  61. Buglino JA, Ozakman Y, Xu Y, Chowdhury F, Tan DS, & Glickman MS (2022). Diisonitrile Lipopeptides Mediate Resistance to Copper Starvation in Pathogenic Mycobacteria. mBio, 13(5), e02513– 02522. https://doi.org/doi: 10.1128/mbio.02513-22 36197089 PMC9600254 · DOI
  62. Bull AT, Asenjo JA, Goodfellow M, & Gómez-Silva B (2016). The Atacama Desert: Technical Resources and the Growing Importance of Novel Microbial Diversity. Annual Review of Microbiology, 70, 215– 234. 10.1146/annurev-micro-102215-095236 27607552 · DOI
  63. Burdușel A-C, Gherasim O, Grumezescu AM, Mogoantă L, Ficai A, & Andronescu E (2018). Biomedical Applications of Silver Nanoparticles: An Up-to-Date Overview. Nanomaterials, 8(9), 681. https://www.mdpi.com/2079-4991/8/9/681 30200373 PMC6163202
  64. Burén S, Jiménez-Vicente E, Echavarri-Erasun C, & Rubio LM (2020). Biosynthesis of Nitrogenase Cofactors. Chemical Reviews, 120(12), 4921– 4968. 10.1021/acs.chemrev.9b00489 31975585 PMC7318056 · DOI
  65. Burger A, & Lichtscheidl I (2019). Strontium in the environment: Review about reactions of plants towards stable and radioactive strontium isotopes. Science of The Total Environment, 653, 1458– 1512. https://doi.org/ 10.1016/j.scitotenv.2018.10.312 30759584 · DOI
  66. Busser B, Moncayo S, Coll J-L, Sancey L, & Motto-Ros V (2018). Elemental imaging using laser-induced breakdown spectroscopy: A new and promising approach for biological and medical applications. Coordination Chemistry Reviews, 358, 70– 79. https://doi.org/ 10.1016/j.ccr.2017.12.006 · DOI
  67. Bütof L, Große C, Lilie H, Herzberg M, Nies DH, & DiRita VJ (2019). Interplay between the Zur Regulon Components and Metal Resistance in Cupriavidus metallidurans. Journal of Bacteriology, 201(15), e00192– 00119. https://doi.org/doi: 10.1128/JB.00192-19 31109989 PMC6620404 · DOI
  68. Cabrita MT, Vale C, & Rauter AP (2010). Halogenated compounds from marine algae. Marine Drugs, 8(8), 2301– 2317. 10.3390/md8082301 20948909 PMC2953405 · DOI
  69. Caldwell DR, & Hudson RF (1974). Sodium, an obligate growth requirement for predominant rumen bacteria. Applied Microbiology, 27(3), 549– 552. https://www.ncbi.nlm.nih.gov/pubmed/4856854 4856854 PMC380082
  70. Campos ACAL, van Dijk WFA, Ramakrishna P, Giles T, Korte P, Douglas A, Smith P, & Salt DE (2021). 1,135 ionomes reveal the global pattern of leaf and seed mineral nutrient and trace element diversity in Arabidopsis thaliana. The Plant Journal, 106(2), 536– 554. https://doi.org/ 10.1111/tpj.15177 33506585 · DOI
  71. Carafoli E, & Krebs J (2016). Why Calcium? How Calcium Became the Best Communicator. Journal of Biological Chemistry, 291(40), 20849– 20857. 10.1074/jbc.R116.735894 27462077 PMC5076498 · DOI
  72. Carlisle DB (1958). Niobium in Ascidians. Nature, 181(4613), 933– 933. 10.1038/181933a0 · DOI
  73. Carpenter R. (1969). Factors controlling the marine geochemistry of fluorine. Geochimica et Cosmochimica Acta, 33(10), 1153– 1167. https://doi.org/ 10.1016/0016-7037(69)90038-6 · DOI
  74. Carrano CJ, Schellenberg S, Amin SA, Green DH, & Küpper FC (2009). Boron and Marine Life: A New Look at an Enigmatic Bioelement. Marine Biotechnology, 11(4), 431. 10.1007/s10126-009-9191-4 19424754 · DOI
  75. Carvalho MF, & Oliveira RS (2017). Natural production of fluorinated compounds and biotechnological prospects of the fluorinase enzyme. Critical Reviews in Biotechnology, 37(7), 880– 897. 10.1080/07388551.2016.1267109 28049355 · DOI
  76. Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, … Webster NS (2019). Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews Microbiology, 17(9), 569– 586. 10.1038/s41579-019-0222-5 31213707 PMC7136171 · DOI
  77. Centola G, Xue F, & Wilks A (2020). Metallotherapeutics development in the age of iron-clad bacteria. Metallomics, 12(12), 1863– 1877. 10.1039/d0mt00206b 33242314 PMC7770001 · DOI
  78. Chan KKJ, & O'Hagan D (2012). Chapter Eleven - The Rare Fluorinated Natural Products and Biotechnological Prospects for Fluorine Enzymology. In Hopwood DA (Ed.), Methods in Enzymology (Vol. 516, pp. 219– 235). Academic Press. https://doi.org/ 10.1016/B978-0-12-394291-3.00003-4 23034231 · DOI
  79. Chandra J, & Keshavkant S (2021). Mechanisms underlying the phytotoxicity and genotoxicity of aluminum and their alleviation strategies: A review. Chemosphere, 278, 130384. https://doi.org/ 10.1016/j.chemosphere.2021.130384 33819888 · DOI
  80. Chandrangsu P, Huang X, Gaballa A, & Helmann JD (2019). Bacillus subtilis FolE is sustained by the ZagA zinc metallochaperone and the alarmone ZTP under conditions of zinc deficiency. Molecular Microbiology, 112(3), 751– 765. 10.1111/mmi.14314 31132310 PMC6736736 · DOI · Paper page
  81. Chapman Anna L. P., Skaff O, Senthilmohan R, Kettle Anthony J., & Davies Michael J. (2009). Hypobromous acid and bromamine production by neutrophils and modulation by superoxide. Biochemical Journal, 417(3), 773– 781. 10.1042/bj20071563 18851713 · DOI
  82. Chasapis CT, Ntoupa P-SA, Spiliopoulou CA, & Stefanidou ME (2020). Recent aspects of the effects of zinc on human health. Archives of Toxicology, 94(5), 1443– 1460. 10.1007/s00204-020-02702-9 32394086 · DOI
  83. Chasteen TG, Fuentes DE, Tantaleán JC, & Vásquez CC (2009). Tellurite: history, oxidative stress, and molecular mechanisms of resistance. FEMS Microbiology Reviews, 33(4), 820– 832. 10.1111/j.1574-6976.2009.00177.x 19368559 · DOI
  84. Chavan TS, Cheng RC, Jiang T, Mathews II, Stein RA, Koehl A, McHaourab HS, Tajkhorshid E, & Maduke M (2020). A CLC-ec1 mutant reveals global conformational change and suggests a unifying mechanism for the CLC Cl(−)/H(+) transport cycle. Elife, 9. 10.7554/eLife.53479 PMC7253180 32310757 · DOI
  85. Chellan P, & Sadler PJ (2015). The elements of life and medicines. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 373(2037). 10.1098/rsta.2014.0182 PMC4342972 25666066 · DOI
  86. Chen X, Schauder S, Potier N, Van Dorsselaer A, Pelczer I, Bassler BL, & Hughson FM (2002). Structural identification of a bacterial quorum-sensing signal containing boron. Nature, 415(6871), 545– 549. 10.1038/415545a 11823863 · DOI
  87. Chen YY, & O'Halloran TV (2022). A zinc chaperone mediates the flow of an inorganic commodity to an important cellular client. Cell, 185(12), 2013– 2015. 10.1016/j.cell.2022.05.012 35688131 · DOI
  88. Chiarenza AA, Farnsworth A, Mannion PD, Lunt DJ, Valdes PJ, Morgan JV, & Allison PA (2020). Asteroid impact, not volcanism, caused the end-Cretaceous dinosaur extinction. Proceedings of the National Academy of Sciences of the United States of America, 117(29), 17084– 17093. 10.1073/pnas.2006087117 32601204 PMC7382232 · DOI
  89. Chitambar CR (2016). Gallium and its competing roles with iron in biological systems. Biochimica et Biophysica Acta, 1863(8), 2044– 2053. 10.1016/j.bbamcr.2016.04.027 27150508 · DOI
  90. Chu BC, Garcia-Herrero A, Johanson TH, Krewulak KD, Lau CK, Peacock RS, Slavinskaya Z, & Vogel HJ (2010). Siderophore uptake in bacteria and the battle for iron with the host; a bird’s eye view. Biometals, 23(4), 601– 611. 10.1007/s10534-010-9361-x 20596754 · DOI
  91. Chu F, & Lidstrom ME (2016). XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense. Journal of Bacteriology, 198(8), 1317– 1325. 10.1128/JB.00959-15 26858104 PMC4859581 · DOI
  92. Cirillo M, Capasso G, Di Leo VA, & De Santo NG (1994). A history of salt. Am J Nephrol, 14(4-6), 426– 431. 10.1159/000168759 7847480 · DOI
  93. Clapham DE (2007). Calcium signaling. Cell, 131(6), 1047– 1058. 10.1016/j.cell.2007.11.028 18083096 · DOI · Paper page
  94. Clayton Gina M., Wang Y, Crawford F, Novikov A, Wimberly Brian T., Kieft Jeffrey S., Falta Michael T., Bowerman Natalie A., Marrack P, Fontenot Andrew P., Dai S, & Kappler John W. (2014). Structural Basis of Chronic Beryllium Disease: Linking Allergic Hypersensitivity and Autoimmunity. Cell, 158(1), 132– 142. https://doi.org/ 10.1016/j.cell.2014.04.048 24995984 PMC4269484 · DOI
  95. Çobani L, & Valentine AM (2022). Microbial Interactions with Titanium. In Hurst CJ (Ed.), Microbial Metabolism of Metals and Metalloids (pp. 527– 543). Springer International Publishing. 10.1007/978-3-030-97185-4_16 · DOI
  96. Cohen PA, & Kodner RB (2022). The earliest history of eukaryotic life: uncovering an evolutionary story through the integration of biological and geological data. Trends in Ecology & Evolution, 37(3), 246– 256. 10.1016/j.tree.2021.11.005 34949483 · DOI
  97. Cole KE, & Valentine AM (2006). Titanium biomaterials: titania needles in the test of the foraminiferan Bathysiphon argenteus. Dalton Transactions(3), 430– 432. 10.1039/B508989A 16395441 · DOI
  98. Collier JL, & Grossman AR (1992). Chlorosis induced by nutrient deprivation in Synechococcus sp. strain PCC 7942: not all bleaching is the same. Journal of Bacteriology, 174(14), 4718– 4726. 10.1128/jb.174.14.4718-4726.1992 1624459 PMC206268 · DOI
  99. Collin MS, Venkatraman SK, Vijayakumar N, Kanimozhi V, Arbaaz SM, Stacey RGS, Anusha J, Choudhary R, Lvov V, Tovar GI, Senatov F, Koppala S, & Swamiappan S (2022). Bioaccumulation of lead (Pb) and its effects on human: A review. Journal of Hazardous Materials Advances, 7, 100094. https://doi.org/ 10.1016/j.hazadv.2022.100094 · DOI
  100. Cologgi DL, Lampa-Pastirk S, Speers AM, Kelly SD, & Reguera G (2011). Extracellular reduction of uranium via Geobacter conductive pili as a protective cellular mechanism. Proceedings of the National Academy of Sciences of the United States of America, 108(37), 15248– 15252. 10.1073/pnas.1108616108 21896750 PMC3174638 · DOI
  101. Cotruvo JA Jr. (2019). The Chemistry of Lanthanides in Biology: Recent Discoveries, Emerging Principles, and Technological Applications. ACS Central Science, 5(9), 1496– 1506. 10.1021/acscentsci.9b00642 31572776 PMC6764073 · DOI
  102. Cotruvo JA Jr, Featherston ER, Mattocks JA, Ho JV, & Laremore TN (2018). Lanmodulin: a highly selective lanthanide-binding protein from a lanthanide-utilizing bacterium. Journal of the American Chemical Society, 140(44), 15056– 15061. 30351021
  103. Crans DC, Smee JJ, Gaidamauskas E, & Yang L (2004). The Chemistry and Biochemistry of Vanadium and the Biological Activities Exerted by Vanadium Compounds. Chemical Reviews, 104(2), 849– 902. 10.1021/cr020607t 14871144 · DOI
  104. Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, & Smith AG (2005). Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature, 438(7064), 90– 93. 10.1038/nature04056 16267554 · DOI · Paper page
  105. Csotonyi JT, Stackebrandt E, & Yurkov V (2006). Anaerobic Respiration on Tellurate and Other Metalloids in Bacteria from Hydrothermal Vent Fields in the Eastern Pacific Ocean. Applied and Environmental Microbiology, 72(7), 4950– 4956. https://doi.org/doi: 10.1128/AEM.00223-06 16820492 PMC1489322 · DOI
  106. Cui J, & Tcherkez G (2021). Potassium dependency of enzymes in plant primary metabolism. Plant Physiology and Biochemistry, 166, 522– 530. https://doi.org/ 10.1016/j.plaphy.2021.06.017 34174657 · DOI
  107. Culbertson EM, & Culotta VC (2021). Copper in infectious disease: Using both sides of the penny. Seminars in Cell & Developmental Biology, 115, 19– 26. https://doi.org/ 10.1016/j.semcdb.2020.12.003 33423931 · DOI
  108. Cunrath O, & Bumann D (2019). Host resistance factor SLC11A1 restricts Salmonella growth through magnesium deprivation. Science, 366(6468), 995– 999. 10.1126/science.aax7898 31753999 · DOI · Paper page
  109. Cvetkovic A, Menon AL, Thorgersen MP, Scott JW, Poole FL 2nd, Jenney FE Jr., Lancaster WA, Praissman JL, Shanmukh S, Vaccaro BJ, Trauger SA, Kalisiak E, Apon JV, Siuzdak G, Yannone SM, Tainer JA, & Adams MW (2010). Microbial metalloproteomes are largely uncharacterized. Nature, 466(7307), 779– 782. 10.1038/nature09265 20639861 · DOI
  110. Danchin A. The Emergence of the First Cells. In Reviews in Cell Biology and Molecular Medicine (pp. 1– 25). https://doi.org/ 10.1002/3527600906.mcb.20130025 · DOI
  111. Danchin A, & Nikel PI (2019). Why Nature Chose Potassium. Journal of Molecular Evolution, 87(9-10), 271– 288. 10.1007/s00239-019-09915-2 31659374 · DOI · Paper page
  112. Daumann LJ (2019). Essential and Ubiquitous: The Emergence of Lanthanide Metallobiochemistry. Angewandte Chemie, 58(37), 12795– 12802. 10.1002/anie.201904090 31021478 · DOI
  113. Daumann LJ, & Camp H. J. M. O. d. (2021). 10 THE BIOCHEMISTRY OF RARE EARTH ELEMENTS. In Peter K & Martha Sosa T (Eds.), Metals, Microbes, and Minerals - The Biogeochemical Side of Life (pp. 299– 324). De Gruyter. https://doi.org/doi: 10.1515/9783110589771-016 · DOI
  114. Daumann LJ, Pol A, Op den Camp HJM, & Martinez-Gomez NC (2022). Chapter One - A perspective on the role of lanthanides in biology: Discovery, open questions and possible applications. In Poole RK & Kelly DJ (Eds.), Advances in microbial physiology (Vol. 81, pp. 1– 24). Academic Press. https://doi.org/ 10.1016/bs.ampbs.2022.06.001 36167440 · DOI
  115. de Bie P, Muller P, Wijmenga C, & Klomp LW (2007). Molecular pathogenesis of Wilson and Menkes disease: correlation of mutations with molecular defects and disease phenotypes. J Med Genet, 44(11), 673– 688. 10.1136/jmg.2007.052746 17717039 PMC2752173 · DOI
  116. de Nooijer LJ, Spero HJ, Erez J, Bijma J, & Reichart GJ (2014). Biomineralization in perforate foraminifera. Earth-Science Reviews, 135, 48– 58. https://doi.org/ 10.1016/j.earscirev.2014.03.013 · DOI
  117. Deblonde GJ, Mattocks JA, Park DM, Reed DW, Cotruvo JA Jr., & Jiao Y (2020). Selective and Efficient Biomacromolecular Extraction of Rare-Earth Elements using Lanmodulin. Inorganic Chemistry, 59(17), 11855– 11867. 10.1021/acs.inorgchem.0c01303 32686425 · DOI
  118. Deblonde GJ-P, Mattocks JA, Dong Z, Wooddy PT, Cotruvo JA, & Zavarin M (2021). Capturing an elusive but critical element: Natural protein enables actinium chemistry. Science Advances, 7(43), eabk0273. https://doi.org/doi: 10.1126/sciadv.abk0273 34669462 PMC8528432 · DOI
  119. Deblonde GJP, Mattocks JA, Wang H, Gale EM, Kersting AB, Zavarin M, & Cotruvo JA (2021). Characterization of Americium and Curium Complexes with the Protein Lanmodulin: A Potential Macromolecular Mechanism for Actinide Mobility in the Environment. Journal of the American Chemical Society, 143(38), 15769– 15783. 10.1021/jacs.1c07103 34542285 · DOI
  120. Decelle J, & Not F (2015). Acantharia. In eLS (pp. 1– 10). https://doi.org/ 10.1002/9780470015902.a0002102.pub2 · DOI
  121. Dembitsky VM (2006). Biogenic Iodine and Iodine-Containing Metabolites. Natural Product Communications, 1(2), 1934578X0600100210. 10.1177/1934578x0600100210 · DOI
  122. Deng R, Chen Y, Deng X, Huang Z, Zhou S, Ren B, Jin G, & Hursthouse A (2021). A Critical Review of Resistance and Oxidation Mechanisms of Sb-Oxidizing Bacteria for the Bioremediation of Sb(III) Pollution. Frontiers in Microbiology, 12, 738596. 10.3389/fmicb.2021.738596 34557178 PMC8453088 · DOI
  123. Deshmukh R, & Bélanger RR (2016). Molecular evolution of aquaporins and silicon influx in plants. Functional Ecology, 30(8), 1277– 1285.
  124. Dibrova DV, Galperin MY, Koonin EV, & Mulkidjanian AY (2015). Ancient Systems of Sodium/Potassium Homeostasis as Predecessors of Membrane Bioenergetics. Biochemistry (Mosc), 80(5), 495– 516. 10.1134/S0006297915050016 26071768 PMC5898217 · DOI
  125. DiSpirito AA, Semrau JD, Murrell JC, Gallagher WH, Dennison C, & Vuilleumier S (2016). Methanobactin and the Link between Copper and Bacterial Methane Oxidation. Microbiology and Molecular Biology Reviews, 80(2), 387– 409. https://doi.org/doi: 10.1128/MMBR.00058-15 26984926 PMC4867365 · DOI
  126. Dittberner H, Ohlmann N, & Acquisti C (2018). Stoichio-Metagenomics of Ocean Waters: A Molecular Evolution Approach to Trace the Dynamics of Nitrogen Conservation in Natural Communities. Frontiers in Microbiology, 9, 1590. 10.3389/fmicb.2018.01590 30072968 PMC6058095 · DOI
  127. Docampo R, de Souza W, Miranda K, Rohloff P, & Moreno SNJ (2005). Acidocalcisomes ? conserved from bacteria to man. Nature Reviews Microbiology, 3(3), 251– 261. 10.1038/nrmicro1097 15738951 · DOI · Paper page
  128. Docampo R, & Huang G (2016). Acidocalcisomes of eukaryotes. Current Opinion in Cell Biology, 41, 66– 72. 10.1016/j.ceb.2016.04.007 27125677 PMC4983533 · DOI
  129. Docampo R, & Moreno SN (2011). Acidocalcisomes. Cell Calcium, 50(2), 113– 119. 10.1016/j.ceca.2011.05.012 21752464 PMC3156361 · DOI
  130. Dominguez DC (2004). Calcium signalling in bacteria. Molecular Microbiology, 54(2), 291– 297. 10.1111/j.1365-2958.2004.04276.x 15469503 · DOI
  131. Domínguez DC, Guragain M, & Patrauchan M (2015). Calcium binding proteins and calcium signaling in prokaryotes. Cell Calcium, 57(3), 151– 165. 10.1016/j.ceca.2014.12.006 25555683 · DOI
  132. Dong Z, Mattocks JA, Deblonde GJP, Hu D, Jiao Y, Cotruvo JA, & Park DM (2021). Bridging Hydrometallurgy and Biochemistry: A Protein-Based Process for Recovery and Separation of Rare Earth Elements. ACS Central Science, 7(11), 1798– 1808. 10.1021/acscentsci.1c00724 34841054 PMC8614107 · DOI
  133. Dos Santos PC, Fang Z, Mason SW, Setubal JC, & Dixon R (2012). Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. BMC Genomics, 13(1), 162. 10.1186/1471-2164-13-162 22554235 PMC3464626 · DOI
  134. Duatti A (2021). Review on 99mTc radiopharmaceuticals with emphasis on new advancements. Nuclear Medicine and Biology, 92, 202– 216. https://doi.org/ 10.1016/j.nucmedbio.2020.05.005 32475681 · DOI
  135. Ducluzeau A-L, & Nitschke W (2016). When Did Hemes Enter the Scene of Life? On the Natural History of Heme Cofactors and Heme-Containing Enzymes. In Cramer WA & Kallas T (Eds.), Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling (pp. 13– 24). Springer Netherlands. 10.1007/978-94-017-7481-9_2 · DOI
  136. Duff MC, & Ramsey ML (2008). Accumulation of radiocesium by mushrooms in the environment: a literature review. Journal of Environmental Radioactivity, 99(6), 912– 932. 10.1016/j.jenvrad.2007.11.017 18191312 · DOI
  137. Duhamel S, Diaz JM, Adams JC, Djaoudi K, Steck V, & Waggoner EM (2021). Phosphorus as an integral component of global marine biogeochemistry. Nature Geoscience, 14(6), 359– 368. 10.1038/s41561-021-00755-8 · DOI
  138. Dupont C, Neupane K, Shearer J, & Palenik B (2008). Diversity, function and evolution of genes coding for putative Ni-containing superoxide dismutases. Environmental Microbiology, 10(7), 1831– 1843. 18412551
  139. Dupont CL, Yang S, Palenik B, & Bourne PE (2006). Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry. Proceedings of the National Academy of Sciences of the United States of America, 103(47), 17822– 17827. 10.1073/pnas.0605798103 17098870 PMC1635651 · DOI · Paper page
  140. Eckhardt S, Brunetto PS, Gagnon J, Priebe M, Giese B, & Fromm KM (2013). Nanobio Silver: Its Interactions with Peptides and Bacteria, and Its Uses in Medicine. Chemical Reviews, 113(7), 4708– 4754. 10.1021/cr300288v 23488929 · DOI
  141. Edmonds KA, Jordan MR, & Giedroc DP (2021). COG0523 proteins: a functionally diverse family of transition metal-regulated G3E P-loop GTP hydrolases from bacteria to man. Metallomics, 13(8). 10.1093/mtomcs/mfab046 PMC8360895 34302342 · DOI · Paper page
  142. Edwards AM, Black KA, & Dos Santos PC (2022). Sulfur Availability Impacts Accumulation of the 2-Thiouridine tRNA Modification in Bacillus subtilis. Journal of Bacteriology, 204(5), e0000922. 10.1128/jb.00009-22 35467390 PMC9112905 · DOI
  143. El-Sheikh AM, Ulrich A, & Broyer TC (1967). Sodium and Rubidium as Possible Nutrients for Sugar Beet Plants. Plant Physiology, 42(9), 1202– 1208. 10.1104/pp.42.9.1202 16656641 PMC1086703 · DOI
  144. Elhacham E, Ben-Uri L, Grozovski J, Bar-On YM, & Milo R (2020). Global human-made mass exceeds all living biomass. Nature, 588(7838), 442– 444. 10.1038/s41586-020-3010-5 33299177 · DOI
  145. Elias M, Wellner A, Goldin-Azulay K, Chabriere E, Vorholt JA, Erb TJ, & Tawfik DS (2012). The molecular basis of phosphate discrimination in arsenate-rich environments. Nature, 491(7422), 134– 137. 10.1038/nature11517 23034649 · DOI
  146. Eom H, & Song WJ (2019). Emergence of metal selectivity and promiscuity in metalloenzymes. Journal of Biological Inorganic Chemistry, 24(4), 517– 531. 10.1007/s00775-019-01667-0 31115763 · DOI
  147. Epstein E. (1999). SILICON. Annual Review of Plant Physiology and Plant Molecular Biology, 50, 641– 664. 10.1146/annurev.arplant.50.1.641 15012222 · DOI
  148. Erb TJ, Kiefer P, Hattendorf B, Gunther D, & Vorholt JA (2012). GFAJ-1 is an arsenate-resistant, phosphate-dependent organism. Science, 337(6093), 467– 470. 10.1126/science.1218455 22773139 · DOI · Paper page
  149. Esquilin-Lebron K, Dubrac S, Barras F, & Boyd JM (2021). Bacterial Approaches for Assembling Iron-Sulfur Proteins. mBio, 12(6), e0242521. 10.1128/mBio.02425-21 34781750 PMC8593673 · DOI
  150. Exley C, & Mold MJ (2015). The binding, transport and fate of aluminium in biological cells. Journal of Trace Elements in Medicine and Biology, 30, 90– 95. 10.1016/j.jtemb.2014.11.002 25498314 · DOI
  151. Eyster C. (1952). Necessity of boron for Nostoc muscorum. Nature, 170(4331), 755. 10.1038/170755a0 13002436 · DOI
  152. Fabiano C, Tezotto T, Favarin JL, Polacco J, & Mazzafera P (2015). Essentiality of nickel in plants: a role in plant stresses [Perspective]. Frontiers in Plant Science, 6. 10.3389/fpls.2015.00754 PMC4585283 26442067 · DOI
  153. Farooq MA, & Dietz KJ (2015). Silicon as Versatile Player in Plant and Human Biology: Overlooked and Poorly Understood. Frontiers in Plant Science, 6, 994. 10.3389/fpls.2015.00994 26617630 PMC4641902 · DOI
  154. Fauchon M, Lagniel G, Aude J-C, Lombardia L, Soularue P, Petat C, Marguerie G, Sentenac A, Werner M, & Labarre J (2002). Sulfur Sparing in the Yeast Proteome in Response to Sulfur Demand. Molecular Cell, 9(4), 713– 723. https://doi.org/ 10.1016/S1097-2765(02)00500-2 11983164 · DOI
  155. Featherston ER, & Cotruvo JA Jr. (2021). The biochemistry of lanthanide acquisition, trafficking, and utilization. Biochimica et Biophysica Acta - Molecular Cell Research, 1868(1), 118864. 10.1016/j.bbamcr.2020.118864 32979423 · DOI
  156. Ferrer M, Golyshina OV, Beloqui A, Golyshin PN, & Timmis KN (2007). The cellular machinery of Ferroplasma acidiphilum is iron-protein-dominated. Nature, 445(7123), 91– 94. 10.1038/nature05362 17203061 · DOI
  157. Fessler M, Gummesson B, Charbon G, Svenningsen SL, & Sørensen MA (2020). Short-term kinetics of rRNA degradation in Escherichia coli upon starvation for carbon, amino acid or phosphate. Molecular Microbiology, 113(5), 951– 963. https://doi.org/ 10.1111/mmi.14462 31960524 · DOI
  158. Field CB, Behrenfeld MJ, Randerson JT, & Falkowski P (1998). Primary production of the biosphere: integrating terrestrial and oceanic components. Science, 281(5374), 237– 240. 10.1126/science.281.5374.237 9657713 · DOI · Paper page
  159. Filella M. (2017). Tantalum in the environment. Earth-Science Reviews, 173, 122– 140. https://doi.org/ 10.1016/j.earscirev.2017.07.002 · DOI
  160. Fischer WW (2016). Breathing room for early animals. Proceedings of the National Academy of Sciences of the United States of America, 113(7), 1686– 1688. 10.1073/pnas.1525100113 26842839 PMC4763752 · DOI
  161. Foster AW, Young TR, Chivers PT, & Robinson NJ (2022). Protein metalation in biology. Current Opinion in Chemical Biology, 66, 102095. 10.1016/j.cbpa.2021.102095 34763208 PMC8867077 · DOI · Paper page
  162. Francioso A, Baseggio Conrado A, Mosca L, & Fontana M (2020). Chemistry and Biochemistry of Sulfur Natural Compounds: Key Intermediates of Metabolism and Redox Biology. Oxidative Medicine and Cellular Longevity, 2020, 8294158. 10.1155/2020/8294158 33062147 PMC7545470 · DOI
  163. Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, & Lefébure T (2016). No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes. Molecular Biology and Evolution, 33(10), 2605– 2620. 10.1093/molbev/msw131 27401232 · DOI
  164. Fraústo da Silva JJR, & Williams RJP (2001). The biological chemistry of the elements: the inorganic chemistry of life (2nd ed.). Oxford University Press.
  165. Frenkel-Pinter M, Rajaei V, Glass JB, Hud NV, & Williams LD (2021). Water and Life: The Medium is the Message. Journal of Molecular Evolution, 89(1), 2– 11. 10.1007/s00239-020-09978-6 33427903 PMC7884305 · DOI · Paper page
  166. Fromm KM (2020). Chemistry of alkaline earth metals: It is not all ionic and definitely not boring! Coordination Chemistry Reviews, 408, 213193. https://doi.org/ 10.1016/j.ccr.2020.213193 · DOI
  167. Frye KA, Sendra KM, Waldron KJ, & Kehl-Fie TE (2022). Old dogs, new tricks: New insights into the iron/manganese superoxide dismutase family. Journal of Inorganic Biochemistry, 230, 111748. https://doi.org/ 10.1016/j.jinorgbio.2022.111748 35151099 PMC9112591 · DOI · Paper page
  168. Fujiwara-Nagata E, & Eguchi M (2004). Significance of Na+ in the fish pathogen, Vibrio anguillarum, under energy depleted condition. FEMS Microbiology Letters, 234(1), 163– 167. 10.1016/j.femsle.2004.03.026 15109735 · DOI
  169. Gaddy J, & Haley K (2015). Metalloregulation of Helicobacter pylori physiology and pathogenesis [Review]. Frontiers in Microbiology, 6, 911. 10.3389/fmicb.2015.00911 26388855 PMC4557348 · DOI
  170. Gallo AD, Zierden MR, Profitt LA, Jones KE, Bonafide CP, & Valentine AM (2019). TiO2 exposure alters transition metal ion quota in Rhodococcus ruber GIN-1. Metallomics, 12(1), 8– 11. 10.1039/c9mt00305c 31913381 · DOI
  171. Garcia AK, McShea H, Kolaczkowski B, & Kacar B (2020). Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum-cofactor utilization. Geobiology, 18(3), 394– 411. 10.1111/gbi.12381 32065506 PMC7216921 · DOI
  172. García-Cañas R, Giner-Lamia J, Florencio FJ, & López-Maury L (2021). A protease-mediated mechanism regulates the cytochrome c(6)/plastocyanin switch in Synechocystis sp. PCC 6803. Proceedings of the National Academy of Sciences of the United States of America, 118(5). 10.1073/pnas.2017898118 PMC7865156 33495331 · DOI
  173. Garcia-Santamarina S, & Thiele DJ (2015). Copper at the Fungal Pathogen-Host Axis. Journal of Biological Chemistry, 290(31), 18945– 18953. 10.1074/jbc.R115.649129 26055724 PMC4521015 · DOI
  174. Gardner SG, McCleary WR, & Slauch JM (2019). Control of the phoBR Regulon in Escherichia coli. EcoSal Plus, 8(2). https://doi.org/doi: 10.1128/ecosalplus.ESP-0006-2019 PMC11573284 31520469 · DOI
  175. Gaur S, Kumar J, Kumar D, Chauhan DK, Prasad SM, & Srivastava PK (2020). Fascinating impact of silicon and silicon transporters in plants: A review. Ecotoxicology and Environmental Safety, 202, 110885. https://doi.org/ 10.1016/j.ecoenv.2020.110885 32650140 · DOI
  176. Genda H. (2016). Origin of Earth’s oceans: An assessment of the total amount, history and supply of water. GEOCHEMICAL JOURNAL, 50(1), 27– 42. 10.2343/geochemj.2.0398 · DOI · Paper page
  177. Ghosh S, Sharma A, & Talukder G (1992). Zirconium. Biological Trace Element Research, 35(3), 247– 271. 10.1007/BF02783770 1283692 · DOI
  178. Giampietro R, Spinelli F, Contino M, & Colabufo NA (2018). The Pivotal Role of Copper in Neurodegeneration: A New Strategy for the Therapy of Neurodegenerative Disorders. Molecular Pharmaceutics, 15(3), 808– 820. 10.1021/acs.molpharmaceut.7b00841 29323501 · DOI
  179. Gilbert PUPA, Bergmann KD, Boekelheide N, Tambutté S, Mass T, Marin F, Adkins JF, Erez J, Gilbert B, Knutson V, Cantine M, Hernández JO, & Knoll AH (2022). Biomineralization: Integrating mechanism and evolutionary history. Science Advances, 8(10), eabl9653. https://doi.org/doi: 10.1126/sciadv.abl9653 35263127 PMC8906573 · DOI
  180. Ginet N, Pardoux R, Adryanczyk G, Garcia D, Brutesco C, & Pignol D (2011). Single-step production of a recyclable nanobiocatalyst for organophosphate pesticides biodegradation using functionalized bacterial magnetosomes. PLoS One, 6(6), e21442. 10.1371/journal.pone.0021442 21738665 PMC3125186 · DOI
  181. Gohara DW, & Di Cera E (2016). Molecular Mechanisms of Enzyme Activation by Monovalent Cations. Journal of Biological Chemistry, 291(40), 20840– 20848. 10.1074/jbc.R116.737833 27462078 PMC5076497 · DOI · Paper page
  182. Gomathy M, Sabarinathan KG, Subramaian KS, Sivashankari Devi T, Ananthi K, Kalaiselvi P, & Jeyshree M (2022). Microbial Remediation of Chromium. In Hurst CJ (Ed.), Microbial Metabolism of Metals and Metalloids (pp. 255– 278). Springer International Publishing. 10.1007/978-3-030-97185-4_10 · DOI
  183. Gómez-Silva B. (2018). Lithobiontic life: "Atacama rocks are well and alive". Antonie Van Leeuwenhoek, 111(8), 1333– 1343. 10.1007/s10482-018-1033-9 29392527 · DOI
  184. González-Ballester D, Casero D, Cokus S, Pellegrini M, Merchant SS, & Grossman AR (2010). RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival. Plant Cell, 22(6), 2058– 2084. 10.1105/tpc.109.071167 20587772 PMC2910963 · DOI
  185. Gonzalez-Fontes A. (2020). Why boron is an essential element for vascular plants: A comment on Lewis (2019) 'Boron: the essential element for vascular plants that never was'. New Phytologist, 226(5), 1228– 1230. 10.1111/nph.16033 31674053 · DOI
  186. González-Muñoz MT, Fernández-Luque B, Martínez-Ruiz F, Ben Chekroun K, Arias JM, Rodríguez-Gallego M, Martínez-Cañamero M, de Linares C, & Paytan A (2003). Precipitation of barite by Myxococcus xanthus: possible implications for the biogeochemical cycle of barium. Applied and Environmental Microbiology, 69(9), 5722– 5725. 10.1128/aem.69.9.5722-5725.2003 12957970 PMC194991 · DOI
  187. Good NM, Fellner M, Demirer K, Hu J, Hausinger RP, & Martinez-Gomez NC (2020). Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function. Journal of Biological Chemistry, 295(24), 8272– 8284. 10.1074/jbc.RA120.013227 32366463 PMC7294098 · DOI
  188. Good NM, Lee HD, Hawker ER, Su MZ, Gilad AA, & Martinez-Gomez NC (2022). Hyperaccumulation of Gadolinium by Methylorubrum extorquens AM1 Reveals Impacts of Lanthanides on Cellular Processes Beyond Methylotrophy. Frontiers in Microbiology, 13, 820327. 10.3389/fmicb.2022.820327 35369483 PMC8969499 · DOI
  189. Good NM, Vu HN, Suriano CJ, Subuyuj GA, Skovran E, & Martinez-Gomez NC (2016). Pyrroloquinoline Quinone Ethanol Dehydrogenase in Methylobacterium extorquens AM1 Extends Lanthanide-Dependent Metabolism to Multicarbon Substrates. Journal of Bacteriology, 198(22), 3109– 3118. 10.1128/JB.00478-16 27573017 PMC5075040 · DOI
  190. Görgen S, Benzerara K, Skouri-Panet F, Gugger M, Chauvat F, & Cassier-Chauvat C (2020). The diversity of molecular mechanisms of carbonate biomineralization by bacteria. Discover Materials, 1(1), 2. 10.1007/s43939-020-00001-9 · DOI
  191. Goss CH, Kaneko Y, Khuu L, Anderson GD, Ravishankar S, Aitken ML, Lechtzin N, Zhou G, Czyz DM, McLean K, Olakanmi O, Shuman HA, Teresi M, Wilhelm E, Caldwell E, Salipante SJ, Hornick DB, Siehnel RJ, Becker L, … Singh, P. K. (2018). Gallium disrupts bacterial iron metabolism and has therapeutic effects in mice and humans with lung infections. Science Translational Medicine, 10(460), eaat7520. https://doi.org/doi: 10.1126/scitranslmed.aat7520 30257953 PMC6637966 · DOI
  192. Goswami P, He K, Li J, Pan Y, Roberts AP, & Lin W (2022). Magnetotactic bacteria and magnetofossils: ecology, evolution and environmental implications. NPJ Biofilms Microbiomes, 8(1), 43. 10.1038/s41522-022-00304-0 35650214 PMC9160268 · DOI
  193. Goullé JP, & Grangeot-Keros L (2020). Aluminum and vaccines: Current state of knowledge. Médecine et Maladies Infectieuses, 50(1), 16– 21. https://doi.org/ 10.1016/j.medmal.2019.09.012 31611133 · DOI
  194. Green R, Allen LH, Bjørke-Monsen A-L, Brito A, Guéant J-L, Miller JW, Molloy AM, Nexo E, Stabler S, Toh B-H, Ueland PM, & Yajnik C (2017). Vitamin B12 deficiency. Nature Reviews Disease Primers, 3(1), 17040. 10.1038/nrdp.2017.40 28660890 · DOI · Paper page
  195. Gregory SP, Barnett MJ, Field LP, & Milodowski AE (2019). Subsurface Microbial Hydrogen Cycling: Natural Occurrence and Implications for Industry. Microorganisms, 7(2), 53. https://www.mdpi.com/2076-2607/7/2/53 30769950 PMC6407114
  196. Griffith DM, Li H, Werrett MV, Andrews PC, & Sun H (2021). Medicinal chemistry and biomedical applications of bismuth-based compounds and nanoparticles. Chemical Society Reviews, 50(21), 12037– 12069. 10.1039/d0cs00031k 34533144 · DOI
  197. Grosjean N, & Blaby-Haas CE (2020). Leveraging computational genomics to understand the molecular basis of metal homeostasis. New Phytologist, 228(5), 1472– 1489. 10.1111/nph.16820 32696981 · DOI
  198. Gross AS, & Graef M (2020). Mechanisms of Autophagy in Metabolic Stress Response. Journal of Molecular Biology, 432(1), 28– 52. https://doi.org/ 10.1016/j.jmb.2019.09.005 31626805 · DOI
  199. Gruber N. (2019). Consistent patterns of nitrogen fixation identified in the ocean. Nature, 566(7743), 191– 193. 10.1038/d41586-019-00498-y 30760905 · DOI
  200. Grzymski JJ, & Dussaq AM (2012). The significance of nitrogen cost minimization in proteomes of marine microorganisms. The ISME Journal, 6(1), 71– 80. 10.1038/ismej.2011.72 21697958 PMC3246230 · DOI

200 of 593 shown

Cited by

Sorted by citations

Authors
Remick, K. A., & Helmann, J. D.
Affiliations
Cornell University (US)
Corresponding author
John D. Helmann
Venue
Advances in Microbial Physiology
Publisher
Elsevier
Published
2023
Volume
82
Pages
1-127
ISSN
0065-2911 (ISSN-L)
OpenAlex
W4318480904
Cited by
71
References
20
Citations by year
2026: 9 · 2025: 32 · 2024: 22 · 2023: 8
FWCI
147.83
Type
book chapter
Language
en
Open access
Locations
  • Advances in microbial physiology/Advances in Microbial Physiology (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion, cc-by)
Funders
National Institutes of Health (R35GM122461)
Topics
  • Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
  • Physical Sciences › Chemistry › Physical and Theoretical Chemistry › History and advancements in chemistry
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
Keywords
periodic table, macronutrients, trace elements, micronutrients, essential elements, domains of life, interactive periodic table, microbial physiology
MeSH terms
Nutrients, Sodium, Trace Elements, Micronutrients

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