The Life History of 21 Breast Cancers

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1. Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia
   Jeffery M. Klco, David H. Spencer, Christopher A. Miller, Malachi Griffith, Tamara Westover, Michelle D. O’Laughlin, Catrina C. Fronick, Vincent J. Magrini, Ryan Demeter, Robert S. Fulton et al. · 2014 · Cancer Cell
2. Somatic mutations and clonal dynamics in healthy and cirrhotic human liver
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3. Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA
   Abbosh, Christopher, Frankell, Alexander M., Harrison, Thomas, Kisistok, Judit, Garnett, Aaron, Johnson, Laura, Veeriah, Selvaraju, Moreau, Mike, Chesh, Adrian, Chaunzwa, Tafadzwa L. et al. · 2023 · Nature
4. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing
   Ryan D. Morin, Karen Mungall, Erin Pleasance, Andrew J. J. Mungall, Rodrigo Goya, Ryan D. Huff, David W. Scott, Jiarui Ding, Andrew J. L. Roth, Readman Chiu et al. · 2013 · Blood
5. Capturing intra-tumor genetic heterogeneity by de novo mutation profiling of circulating cell-free tumor DNA: a proof-of-principle
   Leticia De Mattos‐Arruda, Britta Weigelt, Javier Cortés, Helen H. Won, Charlotte K.Y. Ng, Paolo Giovanni Nuciforo, François‐Clément Bidard, Claudia Monica Aura, Cristina Saura, Vicente Peg et al. · 2014 · Annals of Oncology
6. Genomic Analysis of Smoothened Inhibitor Resistance in Basal Cell Carcinoma
   Hayley J. Sharpe, Grégoire Pau, Gerrit J.P. Dijkgraaf, Nicole Basset‐Séguin, Zora D. Modrusan, Thomas Januario, Vickie Tsui, Alison B. Durham, Andrzej Antoni Dlugosz, Peter M. Haverty et al. · 2015 · Cancer Cell
7. Single-Cell Transcriptomics Meets Lineage Tracing
   Kester, Lennart, van Oudenaarden, Alexander · 2018 · Cell Stem Cell
8. Unravelling biology and shifting paradigms in cancer with single-cell sequencing
   Timour Baslan, James B Hicks · 2017 · Nature reviews. Cancer
9. Pervasive chromosomal instability and karyotype order in tumour evolution
   Thomas B.K. Watkins, Emilia L. Lim, Marina Petković, Sergi Elizalde, Nicolai J. Birkbak, Gareth A. Wilson, David Allan Moore, Eva Camilla Gronroos, Andrew Rowan, Sally M. Dewhurst et al. · 2020 · Nature
10. The first five years of single-cell cancer genomics and beyond
    Nicholas E. Navin · 2015 · Genome Research
11. Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer
    Matthew K. H. Hong, Geoff Macintyre, David C. Wedge, Peter Van Loo, Keval Patel, Sebastian Lunke, Ludmil B. Alexandrov, Clare Sloggett, Marek Cmero, Francesco Marass et al. · 2015 · Nature Communications
12. Principles and methods of integrative genomic analyses in cancer
    Vessela N. Kristensen, Ole Christian Lingjærde, Hege Giercksky Russnes, Hans Kristian Moen Vollan, Arnoldo Frigessi, Anne‐Lise Børresen‐Dale · 2014 · Nature reviews. Cancer
13. TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
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14. Genome sequencing of normal cells reveals developmental lineages and mutational processes
    Behjati, Sam, Huch, Meritxell, van Boxtel, Ruben, Karthaus, Wouter, Wedge, David C., Tamuri, Asif U., Martincorena, Iñigo, Petljak, Mia, Alexandrov, Ludmil B., Gundem, Gunes et al. · 2014 · Nature
15. Prevalence and mutational determinants of high tumor mutation burden in breast cancer
    Romualdo Barroso‐Sousa, Esha Jain, Ofir Cohen, D. Kim, Jorge E. Buendia-Buendia, Eric P. Winer, NU Lin, Sara M. Tolaney, Nikhil Wagle · 2020 · Annals of Oncology
16. Circulating Tumor Cells and Circulating Tumor DNA: Challenges and Opportunities on the Path to Clinical Utility
    Michail Ignatiadis, Mark Lee, Stefanie S. Jeffrey · 2015 · Clinical Cancer Research
17. The Implications of Clonal Genome Evolution for Cancer Medicine
    Samuel A. J. R. Aparicio, Carlos Caldas · 2013 · New England Journal of Medicine
18. Tumor evolution: Linear, branching, neutral or punctuated?
    Alexander Davis, Ruli Gao, Nicholas E. Navin · 2017 · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
19. Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis
    Jamie M. J. Weaver, Caryn S. Ross-Innes, Nicholas Brian Shannon, Andy G. Lynch, Tim Forshew, Mariagnese Barbera, Muhammed Murtaza, Chin‐Ann Johnny Ong, Pierre Lao-Sirieix, Mark Dunning et al. · 2014 · Nature Genetics
20. Cancer Evolution: Mathematical Models and Computational Inference
    Niko Beerenwinkel, Roland F. Schwarz, Moritz Gerstung, Florian M. Markowetz · 2014 · Systematic Biology
21. The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
    Andrew Adey, Joshua N. Burton, Jacob Otto Kitzman, Joseph B. Hiatt, Alexandra P. Lewis, Beth Martin, Ruolan Qiu, Choli Lee, Jay Shendure · 2013 · Nature
22. Secondary mutations in BRCA2 associated with clinical resistance to a PARP inhibitor
    Louise J. Barber, Shahneen Kaur Sandhu, Lina Chen, James Campbell, Iwanka Kozarewa, Kerry Fenwick, Ioannis Assiotis, Daniel Nava Rodrigues, Jorge Sergio Reis-Filho, Víctor Moreno et al. · 2012 · The Journal of Pathology
23. The need for complex 3D culture models to unravel novel pathways and identify accurate biomarkers in breast cancer
    Britta Weigelt, Cyrus Michael Ghajar, Mina J. Bissell · 2014 · Advanced Drug Delivery Reviews
24. Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study
    Staaf, Johan, Glodzik, Dominik, Bosch, Ana, Vallon-Christersson, Johan, Reuterswärd, Christel, Häkkinen, Jari, Degasperi, Andrea, Amarante, Tauanne Dias, Saal, Lao H., Hegardt, Cecilia et al. · 2019 · Nature Medicine
25. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
    Joseph B. Hiatt, Colin C. Pritchard, Stephen J. Salipante, Brian J. O’Roak, Jay Shendure · 2013 · Genome Research
26. The Regulatory Role of MicroRNAs in Breast Cancer
    Hui-Yi Loh, Brendan P. Norman, Kok‐Song Lai, Nik Mohd Afizan Nik Abd Rahman, Noorjahan Banu Alitheen, Mohd Azuraidi Osman · 2019 · International Journal of Molecular Sciences
27. Genomic Scars as Biomarkers of Homologous Recombination Deficiency and Drug Response in Breast and Ovarian Cancers
    Watkins, Johnathan A, Irshad, Sheeba, Grigoriadis, Anita, Tutt, Andrew NJ · 2014 · Breast Cancer Research
28. Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma
    Michael R. Green, Andrew J. Gentles, Ramesh V. Nair, Jonathan Michael Irish, Shingo Kihira, Chih Long Liu, Itai Kela, Erik S. Hopmans, June H. Myklebust, Hanlee P. Ji et al. · 2013 · Blood
29. Intra-tumor heterogeneity of cancer cells and its implications for cancer treatment
    Xiaoxiao Sun, Qiang Yu · 2015 · Acta Pharmacologica Sinica
30. Cancer genomics: one cell at a time
    Nicholas E. Navin · 2014 · Genome biology
31. Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics
    Li, Xiaodun, Francies, Hayley E., Secrier, Maria, Perner, Juliane, Miremadi, Ahmad, Galeano-Dalmau, Núria, Barendt, William J., Letchford, Laura, Leyden, Genevieve M., Goffin, Emma K. et al. · 2018 · Nature Communications
32. Extensive heterogeneity in somatic mutation and selection in the human bladder
    Lawson, Andrew R. J., Abascal, Federico, Coorens, Tim H. H., Hooks, Yvette, O’Neill, Laura, Latimer, Calli, Raine, Keiran, Sanders, Mathijs A., Warren, Anne Y., Mahbubani, Krishnaa T. A. et al. · 2020 · Science
33. Heterogeneity and clinical significance of ESR1 mutations in ER-positive metastatic breast cancer patients receiving fulvestrant
    Spoerke, Jill M., Gendreau, Steven, Walter, Kimberly, Qiu, Jiaheng, Wilson, Timothy R., Savage, Heidi, Aimi, Junko, Derynck, Mika K., Chen, Meng, Chan, Iris T. et al. · 2016 · Nature Communications
34. Breast Cancer Metastasis
    Natascia Marino, Stephan Woditschka, L. Tiffany Reed, Joji Nakayama, Musa Mayer, Maria Wetzel, Patricia Schriver Steeg · 2013 · American Journal Of Pathology
35. Tree inference for single-cell data
    Katharina Jahn, Jack Kuipers, Niko Beerenwinkel · 2016 · Genome biology
36. A new genome‐driven integrated classification of breast cancer and its implications
    Sarah‐Jane Dawson, Oscar M. Rueda, Samuel A. J. R. Aparicio, Carlos Caldas · 2013 · The EMBO Journal
37. Resistance to neoadjuvant chemotherapy in triple-negative breast cancer mediated by a reversible drug-tolerant state
    Gloria Vittone Echeverria, Zhongqi Ge, Sahil Seth, Xiaomei Zhang, Sabrina L. Jeter-Jones, Xinhui Zhou, Shirong Cai, Yizheng Tu, Aaron McCoy, Michael D. Peoples et al. · 2019 · Science Translational Medicine
38. High‐throughput sequencing for biology and medicine
    Wendy WeiJia Soon, Manoj Hariharan, Michael P. Snyder · 2013 · Molecular Systems Biology
39. Pan-cancer analysis of intratumor heterogeneity as a prognostic determinant of survival
    Luc G.T. Morris, Nadeem Riaz, Alexis Desrichard, Yasin Şenbabaoğlu, A. Ari Hakimi, Vladimir Makarov, Jorge Sergio Reis-Filho, Timothy An-thy Chan · 2016 · Oncotarget
40. Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma
    Caryn S. Ross-Innes, Jennifer Becq, Andrew Warren, R. Keira Cheetham, Helen Northen, Maria O’Donovan, Shalini Malhotra, Massimiliano di Pietro, Sergii Ivakhno, Miao He et al. · 2015 · Nature Genetics
41. Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution
    Mirjana Efremova, Dietmar Rieder, Victoria Klepsch, Pornpimol Charoentong, Francesca Finotello, Hubert Hackl, Natascha Hermann‐Kleiter, Martin Löwer, Gottfried Baier, Anne Krogsdam et al. · 2017 · Nature Communications
42. Genomic and Transcriptomic Profiling of Combined Hepatocellular and Intrahepatic Cholangiocarcinoma Reveals Distinct Molecular Subtypes
    Xue, Ruidong, Chen, Lu, Zhang, Chong, Fujita, Masashi, Li, Ruoyan, Yan, Shu-Mei, Ong, Choon Kiat, Liao, Xiwen, Gao, Qiang, Sasagawa, Shota et al. · 2019 · Cancer Cell
43. Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer
    Nik-Zainal, Serena, Wedge, David C, Alexandrov, Ludmil B, Petljak, Mia, Butler, Adam P, Bolli, Niccolo, Davies, Helen R, Knappskog, Stian, Martin, Sancha, Papaemmanuil, Elli et al. · 2014 · Nature Genetics
44. Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis
    Éric Letouzé, Jayendra Shinde, Victor Renault, Gabrielle Couchy, Jean‐Frédéric Blanc, Emmanuel Tubacher, Quentin Bayard, Delphine Bacq, Vincent Meyer, Jérémy Semhoun et al. · 2017 · Nature Communications
45. Genetic and non-genetic clonal diversity in cancer evolution
    James R. Black, Nicholas McGranahan · 2021 · Nature reviews. Cancer
46. EGFR Variant Heterogeneity in Glioblastoma Resolved through Single-Nucleus Sequencing
    Francis, Joshua M., Zhang, Cheng-Zhong, Maire, Cecile L., Jung, Joonil, Manzo, Veronica E., Adalsteinsson, Viktor A., Homer, Heather, Haidar, Sam, Blumenstiel, Brendan, Pedamallu, Chandra Sekhar et al. · 2014 · Cancer Discovery
47. Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
    Young Seok Ju, Iñigo Martincorena, Moritz Gerstung, Mia Petljak, Ludmil B. Alexandrov, Raheleh Rahbari, David C. Wedge, Helen Ruth Davies, Manasa Ramakrishna, Anthony Fullam et al. · 2017 · Nature
48. Breast Tumor Heterogeneity: Source of Fitness, Hurdle for Therapy
    Shany Koren, Mohamed Bentires‐Alj · 2015 · Molecular Cell
49. Intraclonal heterogeneity is a critical early event in the development of myeloma and precedes the development of clinical symptoms
    Brian A. Walker, Christopher P. Wardell, Lorenzo Melchor, Annamaria Brioli, David C. Johnson, Martin Kaiser, Fabio Mirabella, Lucía López‐Corral, Sean Humphray, L Murray et al. · 2013 · Leukemia
50. Patient-derived xenograft models of breast cancer and their predictive power
    James Richard Whittle, Michael T. Lewis, Geoffrey John Lindeman, Jane E. Visvader · 2015 · Breast Cancer Research
51. Turning ecology and evolution against cancer
    Kirill S. Korolev, João B. Xavier, Jeff Gore · 2014 · Nature reviews. Cancer
52. The genomic landscape of breast cancer and its interaction with host immunity
    Stephen James Luen, Balaji Virassamy, Peter Stephen Savas, Roberto Salgado, Sherene Loi · 2016 · The Breast
53. Mutational signatures of ionizing radiation in second malignancies
    Behjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen et al. · 2016 · Nature Communications
54. Promises and challenges of adoptive T-cell therapies for solid tumours
    Matteo Morotti, Ashwag Albukhari, Abdulkhaliq Alsaadi, Mara Artibani, James D. Brenton, Stuart M. Curbishley, Tao Dong, Michael Loran Dustin, Zhiyuan Hu, Nicholas McGranahan et al. · 2021 · British Journal of Cancer
55. Patient-derived xenograft (PDX) models in basic and translational breast cancer research
    Lacey Elizabeth Dobrolecki, Susie Airhart, Denis Alférez, Samuel A. J. R. Aparicio, Fariba Behbod, Mohamed Bentires‐Alj, Cathrin Brisken, Carol J. Bult, Shirong Cai, Robert B. Clarke et al. · 2016 · Cancer and Metastasis Reviews
56. Quantification of subclonal selection in cancer from bulk sequencing data
    Marc J. Williams, Benjamin Werner, Timon Heide, Christina N. Curtis, Chris P. Barnes, Andrea Sottoriva, Trevor A. Graham · 2018 · Nature Genetics
57. Intratumor DNA Methylation Heterogeneity Reflects Clonal Evolution in Aggressive Prostate Cancer
    David Brocks, Yassen Assenov, Sarah Jane Pauline Minner, Olga Bogatyrova, Ronald Simon, Christina Koop, Christopher C. Oakes, Manuela Zucknick, Daniel B. Lipka, Joachim Weischenfeldt et al. · 2014 · Cell Reports
58. Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions
    VITOR HUGO TEIXEIRA, Christodoulos Pipinikas, Adam Pennycuick, Henry Lee-Six, Deepak P. Chandrasekharan, Jennifer Beane, Tiffany J. Morris, Anna Karpathakis, Andrew Feber, Charles E. Breeze et al. · 2019 · Nature Medicine
59. Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing
    Emma Laks, Andrew McPherson, Hans Zahn, Daniel Lai, Adi Steif, Jazmine Brimhall, Justina Biele, Beixi Wang, Tehmina Masud, Jerome Ting et al. · 2019 · Cell
60. Progression from ductal carcinoma in situ to invasive breast cancer: Revisited
    Catherine F. Cowell, Britta Weigelt, Rita A. Sakr, Charlotte K.Y. Ng, James B Hicks, Tari A. King, Jorge Sergio Reis-Filho · 2013 · Molecular Oncology
61. The topography of mutational processes in breast cancer genomes
    Sandro Morganella, Ludmil B. Alexandrov, Dominik Głodzik, Xueqing Zou, Helen Ruth Davies, Johan Staaf, Anieta M. Sieuwerts, Arie B. Brinkman, Sancha Martin, Manasa Ramakrishna et al. · 2016 · Nature Communications
62. Breast tumours maintain a reservoir of subclonal diversity during expansion
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63. Cancer evolution: Darwin and beyond
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64. Genomic landscape and chronological reconstruction of driver events in multiple myeloma
    Maura, Francesco, Bolli, Niccoló, Angelopoulos, Nicos, Dawson, Kevin J., Leongamornlert, Daniel, Martincorena, Inigo, Mitchell, Thomas J., Fullam, Anthony, Gonzalez, Santiago, Szalat, Raphael et al. · 2019 · Nature Communications
65. The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression
    Shadrielle M. G. Espiritu, Lydia Liu, Yulia Rubanova, Vinayak Bhandari, Erle M. Holgersen, Lesia Szyca, Natalie S. Fox, Melvin L.K. Chua, Takafumi N. Yamaguchi, Lawrence E. Heisler et al. · 2018 · Cell
66. Cancer Evolution and the Limits of Predictability in Precision Cancer Medicine
    Kamil Andrzej Lipinski, Louise J. Barber, Matthew N. Davies, Matthew Ashenden, Andrea Sottoriva, Marco Gerlinger · 2016 · Trends in cancer
67. Tracking Genomic Cancer Evolution for Precision Medicine: The Lung TRACERx Study
    Mariam Jamal‐Hanjani, Alan Hackshaw, Yenting Ngai, Jacqui Shaw, Caroline Dive, Sergio A. Quezada, Gary Middleton, Elza C. de Bruin, John P. C. Le Quesne, Seema Shafi et al. · 2014 · PLoS Biology
68. Evolutionary consequences of drug resistance: shared principles across diverse targets and organisms
    Diarmaid Hughes, Dan I. Andersson · 2015 · Nature Reviews Genetics
69. Genomic and evolutionary classification of lung cancer in never smokers
    Tongwu Zhang, Philippe Joubert, Naser Ansari‐Pour, Zhao Wei, Phuc H. Hoang, Rachel Adihe Lokanga, Aaron Lavel Moye, Jennifer Rosenbaum, Abel González-Pérez, Francisco Martínez-Jiménez et al. · 2021 · Nature Genetics
70. Evolutionary biology of high-risk multiple myeloma
    Charlotte Pawlyn, Gareth John Morgan · 2017 · Nature reviews. Cancer
71. Inferring clonal evolution of tumors from single nucleotide somatic mutations
    Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln David Stein, Quaid Morris · 2014 · BMC Bioinformatics
72. Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma
    Lee, Jake June-Koo, Park, Seongyeol, Park, Hansol, Kim, Sehui, Lee, Jongkeun, Lee, Junehawk, Youk, Jeonghwan, Yi, Kijong, An, Yohan, Park, In Kyu et al. · 2019 · Cell
73. Single-cell genetic analysis reveals the composition of initiating clones and phylogenetic patterns of branching and parallel evolution in myeloma
    Lorenzo Melchor, Annamaria Brioli, Christopher P. Wardell, Alex Murison, Nicola E. Potter, Martin Kaiser, Rosemary A Fryer, David C. Johnson, D B Begum, Sanna Hulkki Wilson et al. · 2014 · Leukemia
74. Enter the Matrix: Factorization Uncovers Knowledge from Omics
    Genevieve Stein-O’Brien, Raman Arora, Aedín C. Culhane, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene, Loyal A. Goff, Yifeng Li, Aloune Ngom, Michael F. Ochs et al. · 2018 · Trends in Genetics
75. Combining DNA damaging therapeutics with immunotherapy: more haste, less speed
    Jessica S. Brown, Raghav Sundar, Juanita Suzanne Lopez · 2017 · British Journal of Cancer
76. Fast and scalable inference of multi-sample cancer lineages
    Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef-Haghighi, Robert B. West, Serafim Batzoglou · 2015 · Genome biology
77. THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
    Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael · 2013 · Genome biology
78. Genome and Transcriptome Sequencing in Prospective Metastatic Triple-Negative Breast Cancer Uncovers Therapeutic Vulnerabilities
    Craig, David W., O'Shaughnessy, Joyce A., Kiefer, Jeffrey A., Aldrich, Jessica, Sinari, Shripad, Moses, Tracy M., Wong, Shukmei, Dinh, Jennifer, Christoforides, Alexis, Blum, Joanne L. et al. · 2013 · Molecular Cancer Therapeutics
79. Anti‐Gal: an abundant human natural antibody of multiple pathogeneses and clinical benefits
    Galili, Uri · 2013 · Immunology
80. Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets
    CAMCAP Study Group, David C. Wedge, Gunes Gundem, Thomas Mitchell, Dan J. Woodcock, Iñigo Martincorena, Mohammed Ghori, Jorge Zamora, Adam P. Butler, Hayley C. Whitaker et al. · 2018 · Nature Genetics
81. Longitudinal Liquid Biopsy and Mathematical Modeling of Clonal Evolution Forecast Time to Treatment Failure in the PROSPECT-C Phase II Colorectal Cancer Clinical Trial
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82. Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine
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83. OncoNEM: inferring tumor evolution from single-cell sequencing data
    Edith M. Ross, Florian M. Markowetz · 2016 · Genome biology
84. Cancer Genome Evolutionary Trajectories in Metastasis
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85. Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity
    Akihiro Fujimoto, Mayuko Furuta, Yuichi Shiraishi, Kunihito Gotoh, Yoshiiku Kawakami, Koji Arihiro, Toru Nakamura, Masaki Ueno, Shun-ichi Ariizumi, Nguyễn Hải Hà et al. · 2015 · Nature Communications
86. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
    Mohammed El-Kebir, Layla Oesper, Hannah Acheson-Field, Benjamin J. Raphael · 2015 · Bioinformatics
87. The DNA cytosine deaminase APOBEC3B promotes tamoxifen resistance in ER-positive breast cancer
    Emily K. Law, Anieta M. Sieuwerts, Kelly S. LaPara, Brandon C. Leonard, Gabriel J. Starrett, Amy M. Molan, Nuri A. Temiz, Rachel Isaksson Vogel, Marion E. Meijer‐van Gelder, Fred C.G.J. Sweep et al. · 2016 · Science Advances
88. Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
    Benjamin J. Raphael, Jason R. Dobson, Layla Oesper, Fabio Vandin · 2014 · Genome Medicine
89. Intratumoral Heterogeneity of the Epigenome
    Tali Mazor, Aleksandr Pankov, Jun S. Song, J Costello · 2016 · Cancer Cell
90. Breast Cancer: A Molecularly Heterogenous Disease Needing Subtype-Specific Treatments
    Ugo Testa, Germana Castelli, Elvira Pelosi · 2020 · Medical Sciences
91. Genomic and epigenomic insights into the origin, pathogenesis, and clinical behavior of mantle cell lymphoma subtypes
    Ferran Nadeu, David Martin‐García, Guillem Clot, Ander Díaz‐Navarro, Martí Duran‐Ferrer, Alba Navarro, Roser Vilarrasa‐Blasi, Marta Kulis, Romina Royo, Jesús Gutiérrez‐Abril et al. · 2020 · Blood
92. Evolutionary foundations for cancer biology
    Athena Aktipis, Randolph M. Nesse · 2013 · Evolutionary Applications
93. Genomic patterns of progression in smoldering multiple myeloma
    Bolli, Niccolò, Maura, Francesco, Minvielle, Stephane, Gloznik, Dominik, Szalat, Raphael, Fullam, Anthony, Martincorena, Inigo, Dawson, Kevin J., Samur, Mehmet Kemal, Zamora, Jorge et al. · 2018 · Nature Communications
94. Glioblastoma Multiforme: A Look Inside Its Heterogeneous Nature
    Maria-del-Mar Inda, Rudy Bonavia, Joan Seoane · 2014 · Cancers
95. Genomic and Epigenomic Features of Primary and Recurrent Hepatocellular Carcinomas
    Xiaofan Ding, Mian He, Anthony W.H. Chan, Qi Xiu Song, Siu Ching Sze, Hui Chen, K Man, Kwan Man, Stephen Lam Chan, Paul B.S. Lai et al. · 2019 · Gastroenterology
96. Spatial biology of cancer evolution
    Zaira Seferbekova, Artem Lomakin, Lucy R. Yates, Moritz Gerstung · 2022 · Nature Reviews Genetics
97. Cancer: Evolution Within a Lifetime
    Marco Gerlinger, Nicholas McGranahan, Sally M. Dewhurst, Rebecca A. Burrell, Ian P.M. Tomlinson, Charles Swanton · 2014 · Annual Review of Genetics
98. Macroscopic somatic clonal expansion in morphologically normal human urothelium
    Li, Ruoyan, Du, Yiqing, Chen, Zhanghua, Xu, Deshu, Lin, Tianxin, Jin, Shanzhao, Wang, Gongwei, Liu, Ziyang, Lu, Min, Chen, Xu et al. · 2020 · Science
99. An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data
    Yuichi Shiraishi, Yusuke Sato, Kenichi Chiba, Yusuke Okuno, Yasunobu Nagata, Kenichi Yoshida, Norio Shiba, Yasuhide Hayashi, Haruki Kume, Yukio Homma et al. · 2013 · Nucleic Acids Research
100. Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
     Maria Nattestad, Sara Goodwin, Karen Ng, Timour Baslan, Fritz Joachim Sedlazeck, Philipp Rescheneder, Tyler H. Garvin, Han Fang, James Gurtowski, Elizabeth Hutton et al. · 2018 · Genome Research