Cited by 567Neonatal Respiratory Health ResearchInterstitial Lung Diseases and Idiopathic Pulmonary FibrosisSingle-cell and spatial transcriptomics

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung

Open access
Zepp, Jarod A., Zacharias, William J., Frank, David B., Cavanaugh, Christina A., Zhou, Su, Morley, Michael P., Morrisey, Edward E.·2017·Cell

Abstract

The lung is an architecturally complex organ comprising a heterogeneous mixture of various epithelial and mesenchymal lineages. We use single-cell RNA sequencing and signaling lineage reporters to generate a spatial and transcriptional map of the lung mesenchyme. We find that each mesenchymal lineage has a distinct spatial address and transcriptional profile leading to unique niche regulatory functions. The mesenchymal alveolar niche cell is Wnt responsive, expresses Pdgfrα, and is critical for alveolar epithelial cell growth and self-renewal. In contrast, the Axin2+ myofibrogenic progenitor cell preferentially generates pathologically deleterious myofibroblasts after injury. Analysis of the secretome and receptome of the alveolar niche reveals functional pathways that mediate growth and self-renewal of alveolar type 2 progenitor cells, including IL-6/Stat3, Bmp, and Fgf signaling. These studies define the cellular and molecular framework of lung mesenchymal niches and reveal the functional importance of developmental pathways in promoting self-renewal versus a pathological response to tissue injury.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.cell.2017.07.034

Cites

41 of 41 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • A distinct, novel population of profibrotic alveolar macrophages is restricted to patients with fibrosis and had previously been identified in mice.

    “identified a distinct, novel population of profibrotic alveolar macrophages restricted to patients with fibrosis which had previously been identified in mice5,6.”

    From Fibrosis: from mechanisms to medicines (2020) · cites this paper as [6]

  • Ligand-receptor pair labels can be obtained from the recent CellPhoneDB and used to interpret the highly expressed genes across clusters using statistical models.

    “Ligand–receptor pair labels can be obtained from the recent CellPhoneDB (Vento‐Tormo et al, 2018) and used to interpret the highly expressed genes across clusters using statistical models (Zepp et al, 2017; Zhou et al, 2017; Cohen et al, 2018; Vento‐Tormo et al, 2018).”

    From Current best practices in single-cell RNA-seq analysis: a tutorial (2019) · cites this paper as Zepp et al, 2017

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Cited by

Sorted by citations

Authors
Zepp, J. A., Zacharias, W. J., Frank, D. B., Cavanaugh, C. A., Zhou, S., Morley, M. P., & Morrisey, E. E.
Affiliations
  • Children's Hospital of Philadelphia (US)
  • University of Pennsylvania (US)
Corresponding author
Morrisey, Edward E.
Venue
Cell
Publisher
Elsevier BV
Published
2017-09
Volume
170
Issue
6
Pages
1134-1148.e10
ISSN
0092-8674 (ISSN-L)
OpenAlex
W2751524454
Cited by
567
References
41
Citations by year
2026: 37 · 2025: 64 · 2024: 60 · 2023: 70 · 2022: 63 · 2021: 90 · 2020: 75 · 2019: 57 · 2018: 48 · 2017: 3
FWCI
41.40
Type
journal article
Language
en
Open access
Locations
  • Cell (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
Funders
NIH (R01-HL132999, R01-HL132349, R01-HL087825, U01-HL134745, U01-HL110942, T32-HL007843, T32-HL007586, T32-HL007915, K12-HD043245)
Topics
  • Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Neonatal Respiratory Health Research
  • Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
Keywords
lung mesenchyme, mesenchymal lineage, myofibroblasts, Wnt signaling, PDGFRA, Axin2, IL-6/STAT3 signaling, BMP signaling, FGF signaling, lung injury, secretome, single-cell RNA sequencing, lineage tracing
MeSH terms
Algorithms, Animals, Epithelial Cells, Fibrosis, Lung, Mesoderm, Organoids, Regeneration, Stem Cells, Signal Transduction, Paracrine Communication, Gene Expression Profiling, Mice, Lung Injury, Single-Cell Analysis

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review