Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung
Open accessAbstract
The lung is an architecturally complex organ comprising a heterogeneous mixture of various epithelial and mesenchymal lineages. We use single-cell RNA sequencing and signaling lineage reporters to generate a spatial and transcriptional map of the lung mesenchyme. We find that each mesenchymal lineage has a distinct spatial address and transcriptional profile leading to unique niche regulatory functions. The mesenchymal alveolar niche cell is Wnt responsive, expresses Pdgfrα, and is critical for alveolar epithelial cell growth and self-renewal. In contrast, the Axin2+ myofibrogenic progenitor cell preferentially generates pathologically deleterious myofibroblasts after injury. Analysis of the secretome and receptome of the alveolar niche reveals functional pathways that mediate growth and self-renewal of alveolar type 2 progenitor cells, including IL-6/Stat3, Bmp, and Fgf signaling. These studies define the cellular and molecular framework of lung mesenchymal niches and reveal the functional importance of developmental pathways in promoting self-renewal versus a pathological response to tissue injury.
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A distinct, novel population of profibrotic alveolar macrophages is restricted to patients with fibrosis and had previously been identified in mice.
“identified a distinct, novel population of profibrotic alveolar macrophages restricted to patients with fibrosis which had previously been identified in mice5,6.”
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Ligand-receptor pair labels can be obtained from the recent CellPhoneDB and used to interpret the highly expressed genes across clusters using statistical models.
“Ligand–receptor pair labels can be obtained from the recent CellPhoneDB (Vento‐Tormo et al, 2018) and used to interpret the highly expressed genes across clusters using statistical models (Zepp et al, 2017; Zhou et al, 2017; Cohen et al, 2018; Vento‐Tormo et al, 2018).”
From Current best practices in single-cell RNA-seq analysis: a tutorial (2019) · cites this paper as Zepp et al, 2017
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- Authors
- Zepp, J. A., Zacharias, W. J., Frank, D. B., Cavanaugh, C. A., Zhou, S., Morley, M. P., & Morrisey, E. E.
- Affiliations
- Children's Hospital of Philadelphia (US)
- University of Pennsylvania (US)
- Corresponding author
- Morrisey, Edward E.
- ORCID
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2017-09
- Volume
- 170
- Issue
- 6
- Pages
- 1134-1148.e10
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC5718193
- OpenAlex
- W2751524454
- Cited by
- 567
- References
- 41
- Citations by year
- 2026: 37 · 2025: 64 · 2024: 60 · 2023: 70 · 2022: 63 · 2021: 90 · 2020: 75 · 2019: 57 · 2018: 48 · 2017: 3
- FWCI
- 41.40
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- NIH (R01-HL132999, R01-HL132349, R01-HL087825, U01-HL134745, U01-HL110942, T32-HL007843, T32-HL007586, T32-HL007915, K12-HD043245)
- Topics
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Neonatal Respiratory Health Research
- Health Sciences › Medicine › Pulmonary and Respiratory Medicine › Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
- Keywords
- lung mesenchyme, mesenchymal lineage, myofibroblasts, Wnt signaling, PDGFRA, Axin2, IL-6/STAT3 signaling, BMP signaling, FGF signaling, lung injury, secretome, single-cell RNA sequencing, lineage tracing
- MeSH terms
- Algorithms, Animals, Epithelial Cells, Fibrosis, Lung, Mesoderm, Organoids, Regeneration, Stem Cells, Signal Transduction, Paracrine Communication, Gene Expression Profiling, Mice, Lung Injury, Single-Cell Analysis
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