An Integrative View of Microbiome-Host Interactions in Inflammatory Bowel Diseases

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100

Human gut microbiome viewed across age and geography

Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

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Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

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The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis

Smith, P. M., Howitt, M. R., Panikov, N., Michaud, M., Gallini, C. A., Bohlooly-Y, M., Glickman, J. N., & Garrett, W. S. (2013) · Science · doi:10.1126/science.1241165 · Cited by 5,413

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

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Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

Arpaia, N., Campbell, C., Fan, X., Dikiy, S., van der Veeken, J., deRoos, P., Liu, H., Cross, J. R., Pfeffer, K., Coffer, P. J., et al. (2013) · Nature · doi:10.1038/nature12726 · Cited by 4,838

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611

Autophagy and Viruses: Adversaries or Allies?

Dong, X., & Levine, B. (2013) · Journal of Innate Immunity · doi:10.1159/000346388 · Cited by 4,444

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve

Bravo, J. A., Forsythe, P., Chew, M. V., Escaravage, E., Savignac, H. M., Dinan, T. G., Bienenstock, J., & Cryan, J. F. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1102999108 · Cited by 3,888

Gut microbiota contributes to the distinction between two traditional Chinese medicine syndromes of ulcerative colitis

Zhang, Y., Cai, L., Qi, J.-Y., Lin, Y., Dai, Y.-C., Jiao, N., Chen, Y., Zheng, L., Wang, B., Zhu, L., et al. (2019) · World Journal of Gastroenterology · doi:10.3748/wjg.v25.i25.3242 · Cited by 55

Mucin-Type O-Glycans: Barrier, Microbiota, and Immune Anchors in Inflammatory Bowel Disease

Zhang, Y., Wang, L., Ocansey, D. K. W., Wang, B., Wang, L., & Xu, Z. (2021) · Journal of Inflammation Research · doi:10.2147/jir.s327609 · Cited by 58

Fuzhuan brick tea polysaccharides serve as a promising candidate for remodeling the gut microbiota from colitis subjects in vitro: Fermentation characteristic and anti-inflammatory activity

Chen, G., Wang, M., Zeng, Z., Xie, M., Xu, W., Peng, Y., Zhou, W., Sun, Y., Zeng, X., & Liu, Z. (2022) · Food Chemistry · doi:10.1016/j.foodchem.2022.133203 · Cited by 55

Cyanidin-3- O -glucoside and its phenolic metabolites ameliorate intestinal diseases via modulating intestinal mucosal immune system: potential mechanisms and therapeutic strategies

Cheng, Z., Si, X., Tan, H., Zang, Z., Tian, J., Shu, C., Sun, X., Li, Z., Jiang, Q., Meng, X., et al. (2021) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2021.1966381 · Cited by 52

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

Xiong, X., Bales, E. S., Ir, D., Robertson, C. E., McManaman, J. L., Frank, D. N., & Parkinson, J. (2017) · Microbiome · doi:10.1186/s40168-017-0327-x · Cited by 51

Iron and inflammation – the gut reaction

Verma, S., & Cherayil, B. J. (2017) · Metallomics · doi:10.1039/c6mt00282j · Cited by 51

Impacts of canine distemper virus infection on the giant panda population from the perspective of gut microbiota

Zhao, N., Li, M., Luo, J., Wang, S., Liu, S., Wang, S., Lyu, W., Chen, L., Su, W., Ding, H., et al. (2017) · Scientific Reports · doi:10.1038/srep39954 · Cited by 50

Constitutive Immune Activity Promotes Tumorigenesis in Drosophila Intestinal Progenitor Cells

Petkau, K., Ferguson, M., Guntermann, S., & Foley, E. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.07.078 · Cited by 47

Flammulina velutipes polysaccharide improves C57BL/6 mice gut health through regulation of intestine microbial metabolic activity

Hao, Y., Wang, X., Yuan, S., Wang, Y., Liao, X., Zhong, M., He, Q., Shen, H., Liao, W., & Shen, J. (2020) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2020.11.085 · Cited by 50

Present and Future Therapeutic Approaches to Barrier Dysfunction

Fortea, M., Albert-Bayo, M., Abril-Gil, M., Mall, J. G., Serra-Ruiz, X., Henao-Paez, A., Expósito, E., González-Castro, A. M., Guagnozzi, D., Lobo, B., et al. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.718093 · Cited by 49

Orally Administered Ginkgolide C Attenuates DSS-Induced Colitis by Maintaining Gut Barrier Integrity, Inhibiting Inflammatory Responses, and Regulating Intestinal Flora

Xu, D., Zhuang, L., Gao, S., Ma, H., Cheng, J., Liu, J., Liu, D., Fu, S., & Hu, G. (2022) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.2c06177 · Cited by 49

Crosstalk between microbiota, pathogens and the innate immune responses

Günther, C., Josenhans, C., & Wehkamp, J. (2016) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2016.03.003 · Cited by 50

Differential Analysis of the Nasal Microbiome of Pig Carriers or Non-Carriers of Staphylococcus aureus

Espinosa‐Gongora, C., Larsen, N., Schønning, K., Fredholm, M., & Guardabassi, L. (2016) · PLoS ONE · doi:10.1371/journal.pone.0160331 · Cited by 47

Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium

Zhao, X., & van der Donk, W. A. (2016) · Cell chemical biology · doi:10.1016/j.chembiol.2015.11.014 · Cited by 46

Diet-Intestinal Microbiota Axis in Osteoarthritis: A Possible Role

Li, Y., Luo, W., Deng, Z., & Lei, G. (2016) · Mediators of Inflammation · doi:10.1155/2016/3495173 · Cited by 44

Mucus Detachment by Host Metalloprotease Meprin β Requires Shedding of Its Inactive Pro-form, which Is Abrogated by the Pathogenic Protease RgpB

Wichert, R., Ermund, A., Schmidt, S., Schweinlin, M., Książęk, M., Arnold, P., Knittler, K., Wilkens, F., Potempa, B. A., Rabe, B., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.10.087 · Cited by 45

Development of Inflammatory Bowel Disease Is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice

Sharpton, T., Lyalina, S., Luong, J., Pham, J., Deal, E. M., Armour, C., Gaulke, C., Sanjabi, S., & Pollard, K. S. (2017) · mSystems · doi:10.1128/msystems.00036-17 · Cited by 45

Exopolysaccharides from Bacillus amyloliquefaciens DMBA-K4 ameliorate dextran sodium sulfate-induced colitis via gut microbiota modulation

Kuang, J., Huang, Y., Hu, J., Yu, J., Zhou, Q., & Liu, D. (2020) · Journal of Functional Foods · doi:10.1016/j.jff.2020.104212 · Cited by 45

Microbial perturbations and modulation in conditions associated with malnutrition and malabsorption

Jonkers, D. M. A. E. (2016) · Best Practice & Research Clinical Gastroenterology · doi:10.1016/j.bpg.2016.02.006 · Cited by 43

Microbiome-Based Biomarkers for IBD

Ananthakrishnan, A. N. (2020) · Inflammatory Bowel Diseases · doi:10.1093/ibd/izaa071 · Cited by 42

Metformin Affects Gut Microbiota Composition and Diversity Associated with Amelioration of Dextran Sulfate Sodium-Induced Colitis in Mice

Liu, Z., Liao, W., Zhang, Z., Sun, R., Luo, Y., Chen, Q., Li, X., Lu, R., & Ying, Y. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.640347 · Cited by 42

Luminal microbiota related to Crohn’s disease recurrence after surgery

Hamilton, A. L., Kamm, M. A., Cruz, P. P. D., Wright, E. K., Feng, H., Wagner, J., Sung, J. J. �., Kirkwood, C. D., Inouye, M., & Teo, S. M. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1778262 · Cited by 41

Targeted Delivery of Persulfides to the Gut: Effects on the Microbiome

Dillon, K. M., Morrison, H. A., Powell, C. R., Carrazzone, R. J., Ringel-Scaia, V. M., Winckler, E. W., Allen, I. C., & Matson, J. B. (2021) · Angewandte Chemie International Edition · doi:10.1002/anie.202014052 · Cited by 41

Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis

Laubitz, D., Harrison, C. A., Midura‐Kiela, M. T., Ramalingam, R., Larmonier, C. B., Chase, J., Caporaso, J. G., Besselsen, D. G., Ghishan, F. K., & Kiela, P. R. (2016) · PLoS ONE · doi:10.1371/journal.pone.0152044 · Cited by 37

Electrochemical reverse engineering: A systems-level tool to probe the redox-based molecular communication of biology

Li, J., Liu, Y., Kim, E., March, J. C., Bentley, W. E., & Payne, G. F. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.12.029 · Cited by 38

SDF-1/CXCR4 axis enhances the immunomodulation of human endometrial regenerative cells in alleviating experimental colitis

Li, X., Xu, L., Zhao, Y., Wang, G., Shi, G., Li, H., Hu, Y., Xu, X., Zhang, B., Ye, K., et al. (2019) · Stem Cell Research & Therapy · doi:10.1186/s13287-019-1298-6 · Cited by 38

The role of phosphatidylcholine 34:1 in the occurrence, development and treatment of ulcerative colitis

Yu, T., Zhou, Z., Liu, S., Li, C., Zhang, Z., Zhang, Y., Jin, W., Liu, K., Mao, S., Zhu, L., et al. (2022) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2022.09.006 · Cited by 36

The maca protein ameliorates DSS-induced colitis in mice by modulating the gut microbiota and production of SCFAs

He, P., Zhang, Y., Chen, R., Tong, Z., Zhang, M., & Wu, H. (2023) · Food & Function · doi:10.1039/d3fo03654e · Cited by 37

Fibromyalgia and its New Lessons for Neuropsychiatry

Duque, L., & Fricchione, G. L. (2019) · Medical science monitor basic research/Medical science monitor. Basic research · doi:10.12659/msmbr.915962 · Cited by 35

Diet and microbiome in the beginning of the sequence of gut inflammation

CEBALLOS, D. S., Hernández-Camba, A., & Ramos, L. (2021) · World Journal of Clinical Cases · doi:10.12998/wjcc.v9.i36.11122 · Cited by 37

TNF hampers intestinal tissue repair in colitis by restricting IL-22 bioavailability

Ninnemann, J., Winsauer, C., Bondareva, M. A., Kühl, A. A., Lozza, L., Durek, P., Lissner, D., Siegmund, B., Kaufmann, S. H. E., Mashreghi, M., et al. (2022) · Mucosal Immunology · doi:10.1038/s41385-022-00506-x · Cited by 36

Coadaptation between host genome and microbiome under long-term xenobiotic-induced selection

Wang, G.-H., Dittmer, J., Douglas, B., Huang, L., & Brucker, R. M. (2021) · Science Advances · doi:10.1126/sciadv.abd4473 · Cited by 35

Microbial signals, MyD88, and lymphotoxin drive TNF-independent intestinal epithelial tissue damage

Rusu, I., Mennillo, E., Li, Z., Bain, J. L., Sun, X., Ly, K., Rosli, Y. Y., Naser, M., Wang, Z., Advincula, R., et al. (2022) · Journal of Clinical Investigation · doi:10.1172/jci154993 · Cited by 37

Narirutin mitigates dextrose sodium sulfate-induced colitis in mice by modulating intestinal flora

Xu, D., Liu, D., Jiang, N., Xie, Y., He, D., Cheng, J., Liu, J., Fu, S., & Hu, G. (2024) · Phytomedicine · doi:10.1016/j.phymed.2024.155730 · Cited by 33

Advances in polysaccharide-based biopolymers for probiotic encapsulation: From single polysaccharides to composite systems

Gao, R., Zhao, D., Zhou, X., Wan, Z., Wang, X., Rao, H., Liu, X., Gao, X., & Hao, J. (2025) · Current Research in Food Science · doi:10.1016/j.crfs.2025.101186 · Cited by 33

The Composition of Colonic Commensal Bacteria According to Anatomical Localization in Colorectal Cancer

Zhao, L., Zhang, X., Zuo, T., & Yu, J. Q. (2017) · Engineering · doi:10.1016/j.eng.2017.01.012 · Cited by 35

The trace aminergic system: a gender-sensitive therapeutic target for IBS?

Pretorius, L., & Smith, C. (2020) · Journal of Biomedical Science · doi:10.1186/s12929-020-00688-1 · Cited by 32

Effects of Unconventional Work and Shift Work on the Human Gut Microbiota and the Potential of Probiotics to Restore Dysbiosis

López-Santamarina, A., Mondragón, A. D. C., Cardelle‐Cobas, A., Santos, E. M., Porto-Arias, J. J., Cepeda, A., & Miranda, J. M. (2023) · Nutrients · doi:10.3390/nu15133070 · Cited by 33

Rapamycin extenuates experimental colitis by modulating the gut microbiota

Guo, X., Xu, J., Huang, C., Zhang, Y., Zhao, H., Zhu, M., Wang, J., Nie, Y., Xu, H., Zhou, Y., et al. (2023) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.16381 · Cited by 30

A review of engraftment assessments following fecal microbiota transplant

Herman, C., Barker, B. M., Bartelli, T. F., Chandra, V., Krajmalnik‐Brown, R., Jewell, M., Li, L., Liao, C., McAllister, F. M., Nirmalkar, K., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2525478 · Cited by 34

Adherent-invasive Escherichia coli Exacerbates Antibiotic-associated Intestinal Dysbiosis and Neutrophil Extracellular Trap Activation

Vong, L., Yeung, C. W., Pinnell, L. J., & Sherman, P. M. (2015) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000591 · Cited by 30

Mulberry (Morus atropurpurea Roxb.) leaf protein hydrolysates ameliorate dextran sodium sulfate-induced colitis via integrated modulation of gut microbiota and immunity

Sun, C., Tang, X., Shao, X., Han, D., Zhang, H., Shan, Y., Gooneratne, R., Shi, L., Wu, X., & Hosseininezhad, M. (2021) · Journal of Functional Foods · doi:10.1016/j.jff.2021.104575 · Cited by 29

Antibiotic Treatment Induces Long-lasting Changes in the Fecal Microbiota that Protect Against Colitis

Ward, N. L., Phillips, C. D., Nguyen, D. D., Shanmugam, N. K. N., Song, Y., Hodin, R. A., Shi, H. N., Cherayil, B. J., & Goldstein, A. M. (2016) · Inflammatory Bowel Diseases · doi:10.1097/mib.0000000000000914 · Cited by 27

Open: Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis

Deeke, S. A., Starr, A. E., Ning, Z., Ahmadi, S., Zhang, X., Mayne, J., Chiang, C., Singleton, R., Benchimol, E. I., Mack, D. R., et al. (2018) · The American Journal of Gastroenterology · doi:10.1038/s41395-018-0024-9 · Cited by 28

In vitro digestion properties of Laiyang pear residue polysaccharides and it counteracts DSS-induced gut injury in mice via modulating gut inflammation, gut microbiota and intestinal barrier

Fan, L., Zhu, X., Zhang, D., Li, D., & Zhang, C. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.131482 · Cited by 26

Impact of T300A Variant of ATG16L1 on Antibacterial Response, Risk of Culture Positive Infections, and Clinical Course of Crohn's Disease

Salem, M. A., Nielsen, O. H., Nys, K., Yazdanyar, S., & Seidelin, J. B. (2015) · Clinical and Translational Gastroenterology · doi:10.1038/ctg.2015.47 · Cited by 27

Establishing a novel inflammatory bowel disease prediction model based on gene markers identified from single nucleotide variants of the intestinal microbiota

Jiang, S., Chen, D., Ma, C., Liu, H., Huang, S. W., & Zhang, J. (2022) · iMeta · doi:10.1002/imt2.40 · Cited by 28

Gut Serpinome: Emerging Evidence in IBD

Mkaouar, H., Mariaule, V., Rhimi, S., Hernandez, J. L., Kriaa, A., Jablaoui, A., Akermi, N., Maguin, E., Lesner, A., Korkmaz, B., et al. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22116088 · Cited by 23

Nanosensors for the diagnosis and therapy of neurodegenerative disorders and inflammatory bowel disease

Palaniyandi, T., Kanagavalli, B., Prabhakaran, P., Viswanathan, S., Wahab, M. R. A., Natarajan, S., Moorthy, S. K. K., & Saravanan, K. (2023) · Acta Histochemica · doi:10.1016/j.acthis.2023.151997 · Cited by 25

Interspecific differences and mechanisms of Lactobacillus-derived anti-inflammatory exopolysaccharides

Zhang, J., Zhang, H., Xiao, Y., Wang, H., Zhang, H., & Lu, W. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.130313 · Cited by 25

Human intestinal models to study interactions between intestine and microbes

Aguilar‐Rojas, A., Olivo‐Marín, J., & Guillén, N. (2020) · Open Biology · doi:10.1098/rsob.200199 · Cited by 26

Alteration in Urease-producing Bacteria in the Gut Microbiomes of Patients with Inflammatory Bowel Diseases

Ryvchin, R., Dubinsky, V., Rabinowitz, K. M., Wasserberg, N., Dotan, I., & Gophna, U. (2021) · Journal of Crohn s and Colitis · doi:10.1093/ecco-jcc/jjab101 · Cited by 24

Lactobacillus johnsonii-derived extracellular vesicles carrying GAPDH protect against ulcerative colitis through modulating macrophage polarization

Tao, S., Song, M., Fan, J., Zhu, F., Lv, T., & Wei, H. (2025) · Journal of Advanced Research · doi:10.1016/j.jare.2025.06.035 · Cited by 23

Deciphering the microbiome–metabolome landscape of an inflammatory bowel disease inception cohort

Radhakrishnan, S. T., Mullish, B. H., Olbei, M. L., Danckert, N. P., Garcia, M. V., Serrano-Contreras, J. I., Chrysostomou, D., Balarajah, S., Perry, R. W., Thomas, J. P., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2527863 · Cited by 24

Polysaccharide from Boletus aereus ameliorates DSS-induced colitis in mice by regulating the MANF/MUC2 signaling and gut microbiota

Wei, S., Wang, L., Chen, X., Wang, Y., Tong, L., Wang, L., Han, Q., Guo, D., & Ren, B. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.131232 · Cited by 25

Spatially and temporally precise microbiome profiling in the small intestine using the SIMBA capsule with X-ray tracking

Wang, G., Menon, S., Wilsack, L., Rehak, R., Lou, L., Turbide, C., Auger, J., Tremblay, A., Mathieu, O., Binda, S., et al. (2024) · Frontiers in Microbiomes · doi:10.3389/frmbi.2024.1321624 · Cited by 24

Intestinal Epithelial Ecto-5′-Nucleotidase (CD73) Regulates Intestinal Colonization and Infection by Nontyphoidal Salmonella

Kao, D. J., Saeedi, B. J., Kitzenberg, D., Burney, K. M., Dobrinskikh, E., Battista, K. D., Vázquez‐Torres, A., Colgan, S. P., & Kominsky, D. J. (2017) · Infection and Immunity · doi:10.1128/iai.01022-16 · Cited by 26

Neuroactive metabolites and bile acids are altered in extremely premature infants with brain injury

Pristner, M., Wasinger, D., Seki, D., Klebermaß-Schrehof, K., Berger, A., Berry, D., Wisgrill, L., & Warth, B. (2024) · Cell Reports Medicine · doi:10.1016/j.xcrm.2024.101480 · Cited by 20

Economic Evaluations of Treatments for Inflammatory Bowel Diseases: A Literature Review

Lachaîne, J., Audrey, M., & Beauchemin, C. (2018) · Canadian Journal of Gastroenterology and Hepatology · doi:10.1155/2018/7439730 · Cited by 21

Regulation of pathophysiological and tissue regenerative functions of MSCs mediated via the WNT signaling pathway (Review)

Zhang, Q., Yu, J. L., Chen, Q., Yan, H., Du, H., & Luo, W. (2021) · Molecular Medicine Reports · doi:10.3892/mmr.2021.12287 · Cited by 23

A Class IIb Bacteriocin Plantaricin NC8 Modulates Gut Microbiota of Different Enterotypes in vitro

Pu, J., Hang, S., Liu, M., Chen, Z., Xiong, J., Li, Y., Wu, H., Zhao, X., Liu, S., Gu, Q., et al. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.877948 · Cited by 21

CCL3 Promotes Proliferation of Colorectal Cancer Related with TRAF6/NF‐ κ B Molecular Pathway

Ma, R., Su, J., Zhao, S., He, Y., Li, S., Yang, X., Zhai, S., Rong, S., Zhang, X., Xu, G., et al. (2022) · Contrast Media & Molecular Imaging · doi:10.1155/2022/2387192 · Cited by 21

FAM96A Protects Mice From Dextran Sulfate Sodium (DSS)-Induced Colitis by Preventing Microbial Dysbiosis

Yin, A., Luo, Y., Chen, W., He, M., Deng, J., Zhao, N., Cao, L., & Wang, L. (2019) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00381 · Cited by 21

Integrated analysis of microbe-host interactions in Crohn’s disease reveals potential mechanisms of microbial proteins on host gene expression

Sudhakar, P., Andrighetti, T., Verstockt, S., Caenepeel, C., Ferrante, M., Sabino, J., Verstockt, B., & Vermeire, S. (2022) · iScience · doi:10.1016/j.isci.2022.103963 · Cited by 19

Salidroside ameliorates liver metabonomics in relation to modified gut-liver FXR signaling in furan-induced mice

Yuan, Y., Wu, X., Hong, Y., Zhang, X., Wang, Z., & Yan, H. (2020) · Food and Chemical Toxicology · doi:10.1016/j.fct.2020.111311 · Cited by 20

Measurement of intraluminal pH changes in the gastrointestinal tract of mice with gastrointestinal diseases

Sun, Y., Koyama, Y., & Shimada, S. (2022) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2022.06.061 · Cited by 21

Role of gut-microbiota in disease severity and clinical outcomes

Yadav, M., & Chauhan, N. S. (2022) · Briefings in Functional Genomics · doi:10.1093/bfgp/elac037 · Cited by 19

The role of gut microbiota in infectious diseases

Cai, Y., Chen, L., Zhang, S., Zeng, L., & Zeng, G. (2022) · WIREs Mechanisms of Disease · doi:10.1002/wsbm.1551 · Cited by 18

Commensal Bacteria-Induced Inflammasome Activation in Mouse and Human Macrophages Is Dependent on Potassium Efflux but Does Not Require Phagocytosis or Bacterial Viability

Chen, K., Shanmugam, N. K. N., Pazos, M. A., Hurley, B. P., & Cherayil, B. J. (2016) · PLoS ONE · doi:10.1371/journal.pone.0160937 · Cited by 19

Impact on the Gut Microbiota of Intensive and Prolonged Antimicrobial Therapy in Patients With Bone and Joint Infection

Levast, B., Benech, N., Gasc, C., Batailler, C., Senneville, É., Lustıg, S., Pouderoux, C., Boutoille, D., Boucinha, L., Dauchy, F., et al. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.586875 · Cited by 18

Analyzing the performance of short-read classification tools on metagenomic samples toward proper diagnosis of diseases

Irankhah, L., Khorsand, B., Naghibzadeh, M., & Savadi, A. (2024) · Journal of Bioinformatics and Computational Biology · doi:10.1142/s0219720024500124 · Cited by 16

Specific changes of enteric mycobiota and virome in inflammatory bowel disease

Chu, Y., Jiang, M. Z., Xu, B., Wang, W. J., Chen, D., Li, X. W., Zhang, Y. J., & Liang, J. (2017) · Journal of Digestive Diseases · doi:10.1111/1751-2980.12570 · Cited by 15

Importance of nutritional therapy in the management of intestinal diseases: beyond energy and nutrient supply

Kim, S. (2019) · Intestinal Research · doi:10.5217/ir.2019.00075 · Cited by 16

Anti-Inflammatory and Gut Microbiota Modulation Potentials of Flavonoids Extracted from Passiflora foetida Fruits

Han, X., Song, Y., Huang, R., Zhu, M., Li, M., Requena, T., & Wang, H. (2023) · Foods · doi:10.3390/foods12152889 · Cited by 15

The intestinal microbial metabolite acetyl l-carnitine improves gut inflammation and immune homeostasis via CADM2

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