An Integrative View of Microbiome-Host Interactions in Inflammatory Bowel Diseases

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100

Human gut microbiome viewed across age and geography

Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

Hugot, J.-P., Chamaillard, M., Zouali, H., Lesage, S., Cézard, J.-P., Belaiche, J., Almer, S., Tysk, C., O'Morain, C. A., Gassull, M., et al. (2001) · Nature · doi:10.1038/35079107 · Cited by 5,591

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

Furusawa, Y., Obata, Y., Fukuda, S., Endo, T. A., Nakato, G., Takahashi, D., Nakanishi, Y., Uetake, C., Kato, K., Kato, T., et al. (2013) · Nature · doi:10.1038/nature12721 · Cited by 5,549

The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic T reg Cell Homeostasis

Smith, P. M., Howitt, M. R., Panikov, N., Michaud, M., Gallini, C. A., Bohlooly-Y, M., Glickman, J. N., & Garrett, W. S. (2013) · Science · doi:10.1126/science.1241165 · Cited by 5,413

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

Ogura, Y., Bonen, D. K., Inohara, N., Nicolae, D. L., Chen, F. F., Ramos, R., Britton, H., Moran, T., Karaliuskas, R., Duerr, R. H., et al. (2001) · Nature · doi:10.1038/35079114 · Cited by 5,030

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

Arpaia, N., Campbell, C., Fan, X., Dikiy, S., van der Veeken, J., deRoos, P., Liu, H., Cross, J. R., Pfeffer, K., Coffer, P. J., et al. (2013) · Nature · doi:10.1038/nature12726 · Cited by 4,838

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611

Autophagy and Viruses: Adversaries or Allies?

Dong, X., & Levine, B. (2013) · Journal of Innate Immunity · doi:10.1159/000346388 · Cited by 4,444

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve

Bravo, J. A., Forsythe, P., Chew, M. V., Escaravage, E., Savignac, H. M., Dinan, T. G., Bienenstock, J., & Cryan, J. F. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1102999108 · Cited by 3,888

Inflammatory bowel disease is causally related to irritable bowel syndrome: a bidirectional two-sample Mendelian randomization study

Ke, H., Li, Z., Lin, Q., Shen, Z., Chen, Y., & Chen, J. (2023) · Frontiers in Medicine · doi:10.3389/fmed.2023.1166683 · Cited by 10

The Evolution of Our Understanding of Immunoproliferative Small Intestinal Disease (IPSID) over Time

Alyamany, R., Kharfan‐Dabaja, M. A., Hamadani, M., Alshaibani, A., & Aljurf, M. D. (2022) · Current Oncology · doi:10.3390/curroncol29050301 · Cited by 8

Recent Advances in Gut Microbiota in Psoriatic Arthritis

Bonomo, M. G., D’Angelo, S., Picerno, V., Carriero, A., & Salzano, G. (2025) · Nutrients · doi:10.3390/nu17081323 · Cited by 9

Comparison of vaginal microbiota between women with inflammatory bowel disease and healthy controls

Bar, O., Sudhof, L. S., Yockey, L. J., Bergerat, A., Moriel, N., Andrews, E., Ananthakrishnan, A. N., Xavier, R. J., Yassour, M., & Mitchell, C. M. (2023) · PLoS ONE · doi:10.1371/journal.pone.0284709 · Cited by 8

Polymorphism rs6478109 in the TNFSF15 gene contributes to the susceptibility to Crohn’s disease but not ulcerative colitis: a meta-analysis

Zhou, Y. M., Zhu, Y., Jiang, H., Chen, Z., Lu, B., Li, J., & Shen, X. (2020) · Journal of International Medical Research · doi:10.1177/0300060520961675 · Cited by 8

Ding's herbal enema treats dextran sulfate sodium‑induced colitis in mice by regulating the gut microbiota and maintaining the Treg/Th17 cell balance

Tan, Y.-Y., Ding, Y., Zheng, X., Dai, G.-J., Zhang, S., Xu, Y., Xu, D., Chen, P., Zhang, J., Ma, J., et al. (2021) · Experimental and Therapeutic Medicine · doi:10.3892/etm.2021.10802 · Cited by 8

Ecological Processes Shaping Microbiomes of Extremely Low Birthweight Infants

Zioutis, C., Seki, D., Bauchinger, F., Herbold, C. W., Berger, A., Wisgrill, L., & Berry, D. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.812136 · Cited by 8

Axenic Aedes aegypti develop without live bacteria, but exhibit delayed development and reduced ovipositionPreprint

Correa, M. A., Brackney, D. E., & Steven, B. T. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/264978 · Cited by 8

Bowel preparation before colonoscopy: Consequences, mechanisms, and treatment of intestinal dysbiosis

Zheng, Z.-L., Zheng, Q.-F., Wang, L., & Liu, Y. (2024) · World Journal of Gastroenterology · doi:10.3748/wjg.v31.i2.100589 · Cited by 9

Probiotics improve functional performance in patients with osteoarthritis: a randomized placebo-controlled clinical trial

Karim, A., Khan, H. A., Ahmad, F., & Qaisar, R. (2025) · European Journal of Nutrition · doi:10.1007/s00394-025-03805-8 · Cited by 7

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

Diener, C., Hoge, A. C. H., Kearney, S. M., Kusebauch, U., Patwardhan, S., Moritz, R. L., Erdman, S. E., & Gibbons, S. M. (2021) · Communications Biology · doi:10.1038/s42003-021-01841-8 · Cited by 6

Mechanism of Qingchang Suppository on repairing the intestinal mucosal barrier in ulcerative colitis

Shan, J., Liu, S., Liu, H., Yuan, J., & Lin, J. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1221849 · Cited by 6

Metabolomic and Transcriptomic Correlative Analyses in Germ-Free Mice Link Lacticaseibacillus rhamnosus GG-Associated Metabolites to Host Intestinal Fatty Acid Metabolism and β-Oxidation

Suntornsaratoon, P., Ferraris, R. P., Ambat, J., Antonio, J. M., Flores, J., Jones, A., Su, X., Gao, N., & Li, W. V. (2024) · Laboratory Investigation · doi:10.1016/j.labinv.2024.100330 · Cited by 6

Human microbiome studies in Korea

Choi, S.-M., Cho, S., & Yi, H. (2016) · Allergy Asthma & Respiratory Disease · doi:10.4168/aard.2016.4.5.311 · Cited by 6

Protective association of TNFSF15 polymorphisms with Crohn's disease and ulcerative colitis: A meta-analysis

He, L., Chen, J., Sun, J., Peng, J., & He, Q. (2018) · Saudi Journal of Gastroenterology · doi:10.4103/sjg.sjg_5_18 · Cited by 6

Targeted Delivery of Persulfides to the Gut: Effects on the Microbiome

Dillon, K. M., Morrison, H. A., Powell, C. R., Carrazzone, R. J., Ringel-Scaia, V. M., Winckler, E. W., Allen, I. C., & Matson, J. B. (2021) · Angewandte Chemie · doi:10.1002/ange.202014052 · Cited by 5

Lactobacillus helveticus R0052 attenuates DSS-induced colitis via modulation of gut microbiota, intestinal metabolites and immunological profiles in a mouse model

Dong, X., Han, S., Zha, H., & Li, L. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.108002 · Cited by 4

Unveiling the Links Between Microbial Alteration and Host Gene Disarray in Crohn's Disease via TAHMC

Chang, H., Liu, Y., Wang, Y., Li, L., Mu, Y., Zheng, M., Liu, J., Zhang, J., Bai, R., Li, Y., et al. (2024) · Advanced Biology · doi:10.1002/adbi.202400064 · Cited by 4

Oral Delivery of 5-Demethylnobiletin by Media-Milled Black Rice Particle-Stabilized Pickering Emulsion Alleviates Colitis in Mice: Synergistic Effects of Carrier and Loaded Bioactive

Hu, H., Wang, Y., Zhao, D., & Lu, X. (2025) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.4c08558 · Cited by 4

Plasma and Visceral Organ Kynurenine Metabolites Correlate in the Multiple Sclerosis Cuprizone Animal Model

Polyák, H., Galla, Z., Rajda, C., Monostori, P. B., Klivènyi, P., & Vécsei, L. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26030976 · Cited by 4

Responses of survival, antioxidant system and intestinal microbiota of native snail Bellamya purificata to the invasive snail Pomacea canaliculata

Sui, C., Liu, M., Chuan, S., Wang, B., Zhang, T., Zhang, W., Huang, R., Qiu, Z., Wang, Y., Zhao, W., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-71520-1 · Cited by 4

Network-Based Multiomic Nutrient-Associated Predictive Models for Inflammatory Bowel Disease

Saint-Cyr, M., Shakya, E., Siebert, J., Hill, E. B., Krebs, N. F., de Zoeten, E. F., & Borengasser, S. J. (2025) · Current Developments in Nutrition · doi:10.1016/j.cdnut.2025.107567 · Cited by 4

Microbial membrane vesicles and the intestinal epithelium: a crosstalk in health and disease

Abubakari, A. W., Salvador‐Oke, K. T., M-Kamal, H. S., & Johnson, A. M. (2025) · Archives of Microbiology · doi:10.1007/s00203-025-04562-2 · Cited by 4

A yeast synthetic biotic platform for delivery of therapeutic nanobodies to ameliorate gastrointestinal inflammation

Palou, R., van der Sloot, A. M., Fiebig‐Comyn, A., Zangara, M. T., Sangwan, N., Sánchez‐Osuna, M., Ilyas, B., Zubyk, H. L., Cook, M. A., Wright, G. D., et al. (2026) · Disease Models & Mechanisms · doi:10.1242/dmm.052620 · Cited by 4

Cause and effect? A review of the impact of antibiotics on the gut microbiome in patients undergoing hematopoietic stem cell transplantation

Nakagaki, M., Hajkowicz, K. M., Roberts, J. A., & Henden, A. S. (2025) · Expert Review of Anti-infective Therapy · doi:10.1080/14787210.2025.2527970 · Cited by 3

Development of Controlled Cocultivations for Reproducible Results in Fermentation Processes in Food Biotechnology

Bader, J., Brigham, C. J., Ståhl, U., & Popović, M. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-811443-8.00005-0 · Cited by 3

Age and Gender: Affecting the Positive Rates of Serum PAB and ANCA in Patients with Inflammatory Bowel Disease

Chen, Q., Huang, S., Wu, Y., Zhang, S., Liu, Q., & Chen, M. (2021) · Gastroenterology Research and Practice · doi:10.1155/2021/4963641 · Cited by 3

Clinical Factors Associated With Positive Stool PCR for Gastrointestinal Pathogens in Celiac and Inflammatory Bowel Disease

Varma, S., Green, P. H., & Krishnareddy, S. (2022) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0000000000001657 · Cited by 3

Role of mushroom polysaccharides in improving gut health and associated diseases

Yadav, D., & Negi, P. S. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-822238-6.00013-3 · Cited by 3

The effects of amine-modified single-walled carbon nanotubes on the mouse microbiota

Mulvey, J. J., Littmann, E. R., Ling, L., McDevitt, M. R., Pamer, E. G., & Scheinberg, D. A. (2018) · International Journal of Nanomedicine · doi:10.2147/ijn.s168554 · Cited by 3

Lactobacillus acidophilus, un futur outil thérapeutique dans le traitement des maladies inflammatoires chroniques de l’intestin ?

Thomas, M., Langella, P., & Neyrolles, O. (2015) · médecine/sciences · doi:10.1051/medsci/20153108004 · Cited by 3

A compilation of fecal microbiome shotgun metagenomics from hospitalized patients undergoing hematopoietic cell transplantationPreprint

Yan, J., Liao, C., Taylor, B. P., Fontana, E., Amoretti, L. A., Wright, R. J., Dai, A., Waters, N. R., Peled, J. U., Taur, Y., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.08.23.457365 · Cited by 3

The gut dysbiosis and plasma lipid metabolisms signatures in children with active tuberculosis

Sun, B., Yu, X., Qi, H., Xu, F., Jiao, W., Fang, M., Duan, L., Zeng, X., Yang, X., Wang, X., et al. (2025) · BMC Microbiology · doi:10.1186/s12866-025-04141-x · Cited by 2

Lipidomics, Microbiota, and Intestinal Clostridioides difficile Infection Outcome

Branković, M., Kraišnik, M., Zdravković, D., Kraišnik, N., Jelić, F., Nikolić, N., Djurasevic, S. F., Tosti, T. B., Gmizić, T., & Todorović, Z. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26178214 · Cited by 2

Effect of Bioactive Proteins and Peptides on Gut Microbiota: Perspectives and Advances Using Encapsulation Techniques

Nascimento, A. M. D. S., Passos, T. S., & Morais, A. H. D. A. (2025) · Food Reviews International · doi:10.1080/87559129.2025.2551296 · Cited by 2

Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients

Li, C., Guo, X., He, Y., Wang, J., Hao, J., & Liu, X. (2024) · Annals of Medicine · doi:10.1080/07853890.2024.2337712 · Cited by 3

Integrating Biological Domain Knowledge with Machine Learning for Identifying Colorectal-Cancer-Associated Microbial Enzymes in Metagenomic Data

Bakır-Güngör, B., Ersöz, N. Ş., & Yousef, M. (2025) · Applied Sciences · doi:10.3390/app15062940 · Cited by 2

Negative association between body roundness index and constipation: insights from NHANES

Chen, L., Xiao, H., Yu, X., Huang, B., Guo, S., Yuan, T., & Deng, S. (2025) · Journal of Health Population and Nutrition · doi:10.1186/s41043-025-00886-3 · Cited by 2

Gut Microbiology – A Relatively Unexplored Domain

O’Donovan, C. M., O’Sullivan, Ó., & Cotter, P. D. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.09233-5 · Cited by 2

The role of the microbiome in precision medicine

Pincelli, J. V., Vittorelli, L. O., Stabellini, N., & Pinho, J. R. R. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-819178-1.00002-2 · Cited by 2

Antimicrobial peptides in the gut–brain axis: A straightforward review to unravel some missing links

da Silva, F. P., Bruzaferro, E. V. M., & Câmara, N. O. S. (2020) · Journal of Neuroscience Research · doi:10.1002/jnr.24729 · Cited by 2

The Mechanisms of Lactobacillus Activities: Probiotic Importance of Lactobacillus Species

Ahmed, R., kamil, M., Kamal, L., & Ahmed, H. (2021) · Egyptian Academic Journal of Biological Sciences. E, Medical Entomology and Parasitology · doi:10.21608/eajbse.2021.210635 · Cited by 2

Streptococcus strain C17T as a potential probiotic candidate to modulate oral health

Zhang, W. X., Xiao, C. L., Li, S. Y., Bai, X. C., He, Q., Tian, H., Wang, N., Yang, B., Li, X. M., & Sun, Y. Q. (2022) · Letters in Applied Microbiology · doi:10.1111/lam.13680 · Cited by 2

Mass Spectrometric Behavior and Molecular Mechanisms of Fermented Deoxyanthocyanidins to Alleviate Ulcerative Colitis Based on Network Pharmacology

Bai, Y., Wang, G., Lan, J., Wu, P., Liang, G., Huang, J., Wu, Z., Wang, Y., & Chen, C. (2022) · International Journal of Analytical Chemistry · doi:10.1155/2022/9293208 · Cited by 2

Cell-Free Paper-Based Analysis of Gut Microbiota and Host Biomarkers

Takahashi, M. K., Tan, X., & Dy, A. J. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-1998-8_22 · Cited by 2

Assessing Engraftment Following Fecal Microbiota TransplantPreprint

Herman, C., Barker, B. M., Bartelli, T. F., Chandra, V., Krajmalnik‐Brown, R., Jewell, M., Li, L., Liao, C., McAllister, F. M., Nirmalkar, K., et al. (2024) · PubMed · doi:10.48550/arxiv.2404.07325 · Cited by 2

Metabolic crosstalk: Exploring the dynamic interactions between gut microbiota and metabolism

Akash, M. S. H., & Rehman, K. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-36312-2.00017-6 · Cited by 1

Organosilicone double-long-chain diquaternary ammonium salt acts as a biofilm scavenger to ameliorate colitis induced by dextran sulfate sodium salt

Shi, S., Tang, G., Wei, J., Shen, S., Ding, Z., An, Q., Tao, H., & Wang, F. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1644433 · Cited by 1

Short-chain fatty acid–producing probiotics: an effective approach for modulating gut dysbiosis and mitigating inflammatory responses

Mahooti, M., Safaei, F., Abdolalipour, E., Ahmadbeigi, G., Shokouhi, H., Fallah, T., & Zare, D. (2026) · Microbial Pathogenesis · doi:10.1016/j.micpath.2026.108520 · Cited by 1

Autophagy and LC3-Associated Phagocytosis Mediate the Innate Immune Response

Cunha, L. D., & Martinez, J. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805420-8.00016-0 · Cited by 1

The association between Candida albicans sensitivity to antimycotic drugs and the architecture of their microbial community in the oropharynx of HIV infected patients

Nesvizhsky, Y. V., Voropaev, A. D., Afanasiev, S. S., Volchkova, E. V., Afanasiev, M. S., Voropaeva, E. A., Suleimanova, M. E., Budanova, E. V., & Urban, Y. N. (2023) · Journal of microbiology epidemiology immunobiology · doi:10.36233/0372-9311-326 · Cited by 1

Colonization of microbiota derived from Macaca fasciculari s, Bama miniature pigs, beagle dogs, and C57BL/6J mice alleviates DSS-induced colitis in germ-free mice

Yang, Y., Zhang, Z., Wang, Y., Rao, J.-H., Sun, J., Wu, Z., He, J., Tan, X., Liang, L., Yu, Q., et al. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.00388-24 · Cited by 1

Without Adaptive Immunity, There’s a Cost to Responding STAT

Brown, E., & Xavier, R. J. (2018) · Cell Metabolism · doi:10.1016/j.cmet.2018.03.011 · Cited by 1

Genetics of Multiple Sclerosis

Abulaban, A. A., Hafler, D. A., & Longbrake, E. E. (2019) · Royal Society of Chemistry eBooks · doi:10.1039/9781788016070-00033 · Cited by 1

Alimentos funcionales: Leches fermentadas con bacterias ácido lácticas productoras de exopolisacárido con propiedades antiinflamatorias en el tracto gastrointestinal

Bengoa, A. A. (2020) · El Servicio de Difusión de la Creación Intelectual (National University of La Plata) · doi:10.35537/10915/90208 · Cited by 1

Metagenomic and Transcriptomic Datasets of Plateau Brown Frogs (Rana kukunoris) from the Helan Mountains

Zhang, N., Zhao, Y., Zhang, Z., Zhan, M., Zhao, X., Zhang, Y., Sun, J., Zhang, Y., Teng, L., & Liu, Z. (2025) · Scientific Data · doi:10.1038/s41597-025-05585-6 · Cited by 1

Leukocytapheresis Therapy of Inflammatory Bowel Disease

Kanai∥, T. (2017) · Springer eBooks · doi:10.1007/978-3-319-33703-6_49

CD4 T Cell Interaction with Intestinal Microbes under Homeostasis and Inflammation

Chai, J. N. (2018) · Open Scholarship Institutional Repository (Washington University in St. Louis) · doi:10.7936/v4y0-9r96

Early stage inflammation and cancer as reflected in the gastrointestinal mucus composition: implications for diagnosis, prognosis and pathogenesis

Jabbar, K. S. (2018)

Oral and Human Microbiome Research

Chung, S.-K. (2019) · Journal of dental hygiene science · doi:10.17135/jdhs.2019.19.2.77

Housing laboratory mice deficient for Nod2 and Atg16l1 in a natural environment uncovers genetic and environmental contributions to immune variationPreprint

Lin, J.-D., Devlin, J. C., Yeung, F., McCauley, C., Leung, J. M., Chen, Y.-H., Cronkite, A., Hansen, C., Drake-Dunn, C., Ruggles, K. V., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/741470

The Role of Omic Technologies in the Study of the Human Gut Microbiome

Sen, P., Lamichhane, S., Dickens, A. M., & Orešič, M. (2019) · Elsevier eBooks · doi:10.1016/b978-0-08-100596-5.22922-3

A glimpse into the gut microbiome: A metagenomic approach

Xu, Z. (2020) · AIP conference proceedings · doi:10.1063/5.0000351

Investigating the role of HOTTIP, HOXA13 and PSIP1 in cancer.

McKenna, F. (2021) · Open Access at Essex (University of Essex)

Genetic differentiation of predominant mosquito species in Hainan province and characterization of mosquito midgut microbiota

Kang, X., Liu, B., Li, S., & Xia, Q. (2021) · One Health Bulletin · doi:10.4103/2773-0344.329030

Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease

Xu, C., Mac, Q. D., Jia, Q., & Qiu, P. (2021) · Lecture notes in computer science · doi:10.1007/978-3-030-91415-8_2

Maternal Microbiota as a Therapeutic Target

Saraçoğlu, F. (2022) · Wiley eBooks · doi:10.1002/9783527825462.ch9

Multiobjective nonlinear model predictive control of the microbial processPreprint

Srid, N. (2022) · Research Square · doi:10.21203/rs.3.rs-1946678/v1

Metabolomics and Its Role in Inflammatory Bowel Disease: What Do We Know?

Tsonev, N., Zvezdov, D., Gashkova, D., Andreeva, D., & Stefanova, M. (2022) · International Journal of Innovative Research in Medical Science · doi:10.23958/ijirms/vol07-i11/1555

Esophageal dysbiosis and neoplasia: Moving from Barrett's esophagus to adenocarcinoma

Proaño-Vasco, A., & Quante, M. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-95070-1.00013-8

Prospects of Passive Immunotherapy to Treat Pulpal Inflammation

Arora, S., Ramachandra, S. S., Cooper, P. R., & Hussaini, H. M. (2023) · doi:10.1002/9781119893035.ch14

Metabolomics And Its Role in Inflammatory Bowel Disease-What Do We Know?

Tsonev, N. (2022) · American Journal of Biomedical Science & Research · doi:10.34297/ajbsr.2022.17.002356

Multiobjective Nonlinear Model Predictive Control of the Microbial Process

(2023) · Archives of Clinical and Medical Microbiology · doi:10.33140/acmmj.02.02.04

A Saccharomyces boulardii synthetic biotic platform for delivery of therapeutic nanobodies to ameliorate gastrointestinal inflammationPreprint

Palou, R., van der Sloot, A. M., Fiebig‐Comyn, A., Zangara, M. T., Sangwan, N., Sánchez‐Osuna, M., Ilyas, B., Zubyk, H. L., Cook, M. A., Wright, G. D., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.15.652971

Epigenetic insights into metabolic disorders: Illuminating the molecular complexity of health and disease

Akash, M. S. H., & Rehman, K. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-36312-2.00018-8

Metronidazole-sulfadimethoxine combination affects diet digestibility, immunity indicators, fermentation metabolites, and intestinal microbiome of puppies

Melotto, K. S. K., de Souza, R. B. M. D. S., Fernandes, E. L., Santos, L. N. A., Lima, L. S., Silva, H. L., de Oliveira, S. G., & Félix, A. P. (2025) · Journal of the American Veterinary Medical Association · doi:10.2460/javma.25.02.0109

Maternal administration of octanoate, a medium-chain fatty acid, improves feed efficiency of Japanese black calves through influencing gut bacteriome structure

Yamano, H., Horike, H., Taguchi, Y., Inabu, Y., Miyamoto, H., Kurotani, A., Suzuki, N., Moriya, S., Nakaguma, T., Ishii, C., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-18490-0

Changes in Gut Microbiome According to Probiotic Intake in Rectal Cancer Patients Undergoing Diverting Stoma Repair: Study Protocol

Park, H.-M., Lee, J., Lee, S. Y., Kim, C. H., & Kim, H. R. (2025) · Journal of Clinical Medicine · doi:10.3390/jcm14207190

Système nerveux entérique : source de prostaglandines D2 et E2, implication dans les maladies inflammatoires chroniques de l'intestin

Loupp, A.-G. L. (2018) · theses.fr (ABES) · doi:10.70675/df3ee31fz8b68z46bcza3dfz5a5b912fe40f

Caractérisation structurale et inhibition d’une nanomachine impliquée dans la compétition bactérienne : le T6SS

Cherrak, Y. (2020) · theses.fr (ABES) · doi:10.70675/50fe6f7bz2852z46e8z8c69z34c04bfce736

Modulatory properties of dietary fiber and role of intestinal mucus on Enterotoxigenic Escherichia coli (ETEC) pathogenicity

Sauvaitre, T. (2022) · theses.fr (ABES) · doi:10.70675/004c1986z8392z4e4bzb718zacdeca62f6a7

Implication des protéases du microbiote intestinal dans les maladies inflammatoires digestives humaines

Mariaule, V. (2024) · theses.fr (ABES) · doi:10.70675/1d41e841zf788z4dd7z8784zc26304e24ea1

Large language models enhance annotation of enzymes in metagenomes

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