The DOI matches its Crossref record; 192 of the 193 references it cites were found in a registry or an index.
Rethinking healthy eating in light of the gut microbiome
Open accessAbstract
Given the worldwide epidemic of diet-related chronic diseases, evidence-based dietary recommendations are fundamentally important for health promotion. Despite the importance of the human gut microbiota for the physiological effects of diet and chronic disease etiology, national dietary guidelines around the world are just beginning to capitalize on scientific breakthroughs in the microbiome field. In this review, we discuss contemporary nutritional recommendations from a microbiome science perspective, focusing on mechanistic evidence that established host-microbe interactions as mediators of the physiological effects of diet. We apply this knowledge to inform discussions of nutrition controversies, advance innovative dietary strategies, and propose an experimental framework that integrates the microbiome into nutrition research. The congruence of key paradigms in the nutrition and microbiome disciplines validates current recommendations in dietary guidelines, and the systematic incorporation of microbiome science into nutrition research has the potential to further improve and innovate healthy eating.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Microbiome-mediated links between diet and health have been prevalently investigated by considering the role of the abiotic components of foods. 35-41”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [39]
Citations
Cites
Food in the Anthropocene: the EAT–Lancet Commission on healthy diets from sustainable food systems
Willett, W., Rockström, J., Loken, B., Springmann, M., Lang, T., Vermeulen, S., Garnett, T., Tilman, D., DeClerck, F., Wood, A., et al. (2019) · The Lancet · doi:10.1016/s0140-6736(18)31788-4 · Cited by 10,880
Hill (2014) · doi:10.1038/nrgastro.2014.66 · Cited by 9,592
Gibson, G. R., Hutkins, R., Sanders, M. E., Prescott, S. L., Reimer, R. A., Salminen, S. J., Scott, K., Stanton, C., Swanson, K. S., Cani, P. D., et al. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.75 · Cited by 5,634
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., et al. (2011) · Nature · doi:10.1038/nature09922 · Cited by 5,597
Gut microbiota in health and disease
Sekirov, I., Russell, S. L., Antunes, L. C. M., & Finlay, B. B. (2010) · Physiological Reviews · doi:10.1152/physrev.00045.2009 · Cited by 4,182
Personalized nutrition by prediction of glycemic responses
Zeevi, D., Korem, T., Zmora, N., Israeli, D., Rothschild, D., Weinberger, A., Ben-Yacov, O., Lador, D., Avnit-Sagi, T., Lotan-Pompan, M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.11.001 · Cited by 2,929
The gut microbiota, bacterial metabolites and colorectal cancer
Louis, P., Hold, G. L., & Flint, H. J. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3344 · Cited by 2,917
Desai, M. S., Seekatz, A. M., Koropatkin, N. M., Kamada, N., Hickey, C. A., Wolter, M., Pudlo, N. A., Kitamoto, S., Terrapon, N., Muller, A., et al. (2016) · Cell · doi:10.1016/j.cell.2016.10.043 · Cited by 2,805
Mechanisms underlying the resistance to diet-induced obesity in germ-free mice
Bäckhed, F., Manchester, J. K., Semenkovich, C. F., & Gordon, J. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605374104 · Cited by 2,615
Changes in diet and lifestyle and long-term weight gain in women and men
Mozaffarian, D., Hao, T., Rimm, E. B., Willett, W. C., & Hu, F. B. (2011) · New England Journal of Medicine · doi:10.1056/nejmoa1014296 · Cited by 2,527
Flagged first, then by citations
1 of the 193 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
- Neuhouser, 2020, Red and processed meat: more with less? Am, J. Clin. Nutr., 111, 252
Cited by
Sorted by citations
Items 201–252 of 252
The Future of Gut Microbiota and Nutrition
Ishiguro, E. E., Haskey, N., & Campbell, K. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-91387-4.00002-8
Gänzle, M. G. (2023) · Current Opinion in Food Science · doi:10.1016/j.cofs.2023.101077
O PAPEL DA MICROBIOTA INTESTINAL, PROBIÓTICOS E ESTILO DE VIDA NA SAÚDE METABÓLICA E NA OBESIDADE
Florêncio, G. P., Onofre, M. J., Menezes, R. D. P., Sadoyama, L. P., Sadoyama, A., Leal, G., & Röder, D. V. D. D. B. (2023) · Enciclopédia Biosfera · doi:10.18677/encibio_2023d25
Vaidya Saadhana - Healthy dietary behavior: A powerful tool for maintenance of health
Kothavale, S., & Sharma, A. P. V. (2024) · International Journal of Ayurveda Research · doi:10.4103/ijar.ijar_24_24
Human microbiome and health: Disease, intervention, and regulation
Xu, M. (2024) · Theoretical and Natural Science · doi:10.54254/2753-8818/37/20240179
Jiang, H., Zeng, W. G., Zhang, X., Cao, D., Peng, A., & Zhu, F. (2024) · Research Square · doi:10.21203/rs.3.rs-4529512/v1
Chaves-Jiménez, G., & Briceño-Chaves, M. (2024) · Revista Tecnología en Marcha · doi:10.18845/tm.v37i9.7623
How to feed your microbiome? The role of dietary fibres in shaping microbiome and host health
Klementina-Imelda, I., Stefánia, J.-K., & Mara, G. (2025) · Acta Universitatis Sapientiae Alimentaria · doi:10.47745/ausal-2024-0006
Hirata, Y., Nomura, K., Hozumi, K., Sugawara, K., Hosokawa, Y., Uchiyama, K., Inoue, T., Nishigaki, T., Liyuan, A., Yamada, S., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.02.25.640219
Entzündungskrankheiten: Was leistet eine antientzündliche Ernährung?
Geisler, C., Dörge, M., & Laudes, M. (2025) · Diabetes aktuell · doi:10.1055/a-2563-8623
Wei, Z., Li, J., Wang, X., Wang, X., & Zhao, D. (2025) · Journal of Thrombosis and Thrombolysis · doi:10.1007/s11239-025-03120-3
Asnicar, F., & Manara, S. (2025) · The microbiomes of humans, animals, plants, and the environment · doi:10.1007/978-3-031-84065-4_6
Xiao, C., Chen, Q., Shuai, M., Gao, C., Gou, W., Miao, Z., Zhang, K., Shen, L., Liang, X., Wang, C., et al. (2025) · BMC Medicine · doi:10.1186/s12916-025-04307-4 · Cited by 1
Yerka, M. K., Liu, Z., Bean, S. R., Nigam, D., Hayes, C. M., Druetto, D., Krishnamoorthy, G., Meiwes, S., Cucit, G., Patil, G., et al. (2025) · Journal of Applied Genetics · doi:10.1007/s13353-025-00993-1
Lam, T., Gruzmark, F. S., Ondreyka, J., Lenczowski, J., Harris-Tryon, T. A., Frew, J. W., & Lev‐Tov, H. A. (2025) · Integrative and Complementary Therapies · doi:10.1177/27683192251376656
Nutrition, Gut Microbiota, and the Pathogenesis of Cardiovascular Toxicity
Radwan, M. M. (2025) · Advances in biochemistry in health and disease · doi:10.1007/978-3-031-90598-8_30
The Role of Diet in Supporting Neuroplasticity and Promoting Brain Resilience
Lashin, B. I., Aldalil, S. S., Hefnawy, M. T., Elattar, M., Ghahremanpour, G. K., Mahmoud, A., & Hammad, Y. (2025) · Nutritional neurosciences · doi:10.1007/978-981-95-1983-5_7
Microbial Feast or Famine: dietary carbohydrate composition and gut microbiota metabolic functionPreprint
Dirks, B., Mohr, A. E., Corbin, K. D., Carnero, E. Á., Smith, S. R., Whisner, C. M., Rittmann, B. E., & Krajmalnik‐Brown, R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.27.684932
Effect of Dietary Neutral Detergent Fiber Intake on Improving Fecal Consistency in Gestating Gilts
Ji, Y., Gu, F., Yang, X., Wang, L., Jiang, Z., Shao, F., Xiao, H., Gao, K., & Zhu, C. (2025) · Animals · doi:10.3390/ani15233455
Additional file 1 of Prediction of BMI traits in the Chinese population based on the gut metagenome
Liang, Y., Dou, S., Zhao, G., Shen, J., Fu, G., Fu, L., Li, S., Cong, B., & Dong, C. (2023) · Figshare · doi:10.6084/m9.figshare.24779270
Degraeve, A. L., Haufroid, V., Loriot, A. E., Gatto, L., Andries, V., Vereecke, L., Elens, L., & Bindels, L. B. (2023) · Figshare · doi:10.6084/m9.figshare.23632669
Sun, P., Wang, M., Liu, Y.-X., Li, L., Chai, X., Zheng, W., Chen, S., Zhu, X., & Zhao, S. (2023) · Figshare · doi:10.6084/m9.figshare.23714236
Zeng, S.-Y., Liu, Y.-F., Zeng, Z.-L., Zhao, Z.-B., Yan, X.-L., Zheng, J., Chen, W., Wang, Z.-X., Xie, H., & Liu, J.-H. (2024) · Figshare · doi:10.6084/m9.figshare.26827417
Degraeve, A. L., Haufroid, V., Loriot, A. E., Gatto, L., Andries, V., Vereecke, L., Elens, L., & Bindels, L. B. (2023) · Figshare · doi:10.6084/m9.figshare.23632666
Zeng, S.-Y., Liu, Y.-F., Zeng, Z.-L., Zhao, Z.-B., Yan, X.-L., Zheng, J., Chen, W., Wang, Z.-X., Xie, H., & Liu, J.-H. (2024) · Figshare · doi:10.6084/m9.figshare.26827390
Lei, C., Liang, R., Cheng, B., Cao, X., Zhang, J., Wang, C., & Wang, Z. (2026) · Environment & Health · doi:10.1021/envhealth.5c00304
Maria-Eleni, M., & Charidemou, E. (2026) · Acta Astronautica · doi:10.1016/j.actaastro.2026.01.006
Liu, T., Lei, H., Zhen, X., Zheng, N., Ma, Y., Zhang, R., Lyu, B., Zhao, J., & Ding, F. (2026) · Journal of Food Science · doi:10.1111/1750-3841.70778
Baig, A. A., Htun, A. T., Htoo, P. M., Shwe, W. H., Win, K. Z., Chopra, S., & Chopra, H. (2025) · Scripta Medica · doi:10.5937/scriptamed56-62322
Entzündungskrankheiten: Was leistet eine antientzündliche Ernährung?
Geisler, C., Dörge, M., & Laudes, M. (2026) · Zahnmedizin up2date · doi:10.1055/a-2688-1167
Supportive Therapie der Dysbiose
Lederer, A.-K., Görrissen, N., Klein, A. C., Huber, R., & Badr, M. T. (2026) · coloproctology · doi:10.1007/s00053-026-00945-1
Gut Microbiota, Functional Foods, and Human Health
Kamal, M., Abdellatif, M. M., & El-Hack, M. E. A. (2026) · Springer eBooks · doi:10.1007/978-3-032-15798-0_8
Gut microbiome in integrative oncology
Lacey, J., Stringer, A. M., Cross, C., & Wardill, H. R. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-30194-0.00004-7
Ali, S., Alioui, Y., khan, I., Ullah, H., Rahman, M. U., Atta, A., Abusidu, M., Ilyas, M., Noor, U., Ma, R., et al. (2026) · Frontiers in Pharmacology · doi:10.3389/fphar.2026.1705032
Pancreatic Cancer in the Holobiont and Therapeutic Targets: A Review
Terry, C., Hall, L. A., Halle-Smith, J. M., Edwards, L. A., Sivakumar, S., Chapple, I., Beggs, A. D., Iqbal, T. H., & Roberts, K. J. (2026) · Journal of Clinical Medicine · doi:10.3390/jcm15093225
Anti-Cancer Effects of Quercetin: What Role Does the Gut Microbiota Play?
Yi, G., Liu, Y., Li, G., & Chang, K. (2026) · Molecules · doi:10.3390/molecules31091456
Pang, H., Peng, B., Yan, X., Wang, J., Lu, Y., Yuan, X., Zhang, Y., Zhang, L., Huang, J., Zhang, Y., et al. (2026) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-026-06221-1
Gut Microbiome Changing Foods and Nutrition
Nunavath, R. S., Nagappan, K., & Chekraverthy, B. K. (2026) · Springer eBooks · doi:10.1007/978-981-95-7494-0_16
Tang, A., Tian, T., Wei, L. I., LI, Y., Lai, H., Wang, M., He, J., Feng, X., Chen, H., He, Y., et al. (2026) · Nutrition · doi:10.1016/j.nut.2026.113284
Translational human gut microbiome research: What are the missing pieces of the puzzle?
Fassarella, M., & Smidt, H. (2026) · Journal of Translational Medicine · doi:10.1186/s12967-026-08490-7
Toward a gut-AMPK axis: the microbiome and AMPK signaling in nutrition and healthy aging
Dassoff, E. S., Islam, H., & Allen, J. M. (2026) · Frontiers in Physiology · doi:10.3389/fphys.2026.1861013
do Nascimento, C. S., Fonteles, T. V., de Oliveira, F. A., & Rodrigues, S. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.109607
Zhang, Z., Zhang, Y., Shi, Y., Luo, X., Wei, Z., An, P., Luo, Y., & Luo, J. (2026) · Nutrients · doi:10.3390/nu18152464
Challenges and Considerations in Probiotic Therapy
Raman, M., Mishra, R., Gupta, S. K., Nishtala, S., & Jacob, S. (2026) · Springer eBooks · doi:10.1007/978-981-92-0002-3_21
Seethaler, B., Basrai, M., Delzenne, N. M., Walter, J., Nguyen, N. K., & Bischoff, S. C. (2026) · Microbiome · doi:10.1186/s40168-026-02501-x
Self-citationThe Gut Microbiome as a Mechanistic Link Between the Planetary Health Diet and Healthy Aging
Jarecsny, T., Ceglédi, A., Csípő, T., Fazekas‐Pongor, V., Mózes, N., Csík, B., Zábó, V., Lipécz, Á., Nyáry, D., & Fekete, M. (2026) · Nutrients · doi:10.3390/nu18172864
Preidis, G. A., Berčík, P., Marette, A., O’Mahony, L., Sperandio, V., & Quigley, E. M. M. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2728828
Editorial for Special Issue “Dietary and Animal Gut Microbiota”
Pi, Y. (2026) · Microorganisms · doi:10.3390/microorganisms14102234
Liu, M., Luo, M., Huang, Y., Ji, T., Wang, Y., Wang, Q., Huang, J., Jiang, T., Zhang, C., Mi, T., et al. (2026) · Aging Cell · doi:10.1111/acel.70728
Autuori, M., Lengelé, L., Rombaux, M., Dormal, V., Deldicque, L., Cani, P. D., Bindels, L. B., Neyrinck, A. M., & Delzenne, N. M. (2026) · Gut Microbes · doi:10.1080/19490976.2026.2740921
Day, A. S., Armet, A. M., Kamath, S., Joyce, P., Bryant, R. V., & Armstrong, H. (2026) · Gut Microbes Reports · doi:10.1080/29933935.2026.2744027
Self-citationPleiotropic roles of microbial bile acid metabolism in intestinal health and diseases
Qi, M., Liu, X., & Gonzalez, F. J. (2026) · Cell Host & Microbe · doi:10.1016/j.chom.2026.09.010
Metadata
- Authors
- Armet, A. M., Deehan, E. C., O’Sullivan, A. F., Mota, J. F., Field, C. J., Prado, C. M., Lucey, A. J., & Walter, J.
- Affiliations
- University of Alberta (CA)
- University College Cork (IE)
- Corresponding author
- Walter, Jens
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2022-06
- Volume
- 30
- Issue
- 6
- Pages
- 764-785
- ISSN
- 1931-3128 (ISSN-L)
- OpenAlex
- W4282936738
- Semantic Scholar
- fbfaf88746d204711515477f4b1c26eef07a8089
- Cited by
- 252
- References
- 193
- Citations by year
- 2026: 41 · 2025: 80 · 2024: 68 · 2023: 49 · 2022: 14
- FWCI
- 5.50
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 372 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Cell Host & Microbe (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Pfizer
- Fresenius Kabi
- Canadian Institutes of Health Research (PJT-152994)
- Science Foundation Ireland (19/RP/6853, APC/SFI/12/RC/2273_P2)
- Alberta Innovates
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Nutritional Studies and Diet
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Nutrition, Genetics, and Disease
- Keywords
- gut microbiota, healthy eating, dietary guidelines, host-microbe interactions, diet-related chronic diseases, dietary recommendations, diet and microbiome
- MeSH terms
- Gastrointestinal Microbiome, Diet, Healthy, Diet, Humans, Nutritional Status
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review