Cited by 252Gut microbiota and healthNutritional Studies and DietNutrition, Genetics, and Disease

The DOI matches its Crossref record; 192 of the 193 references it cites were found in a registry or an index.

Rethinking healthy eating in light of the gut microbiome

Open access

Armet, Anissa M., Deehan, Edward C., O’Sullivan, Aidan F., Mota, João F., Field, Catherine J., Prado, Carla M., Lucey, Alice J., Walter, Jens·2022·Cell Host & Microbe

DOI 10.1016/j.chom.2022.04.016

Open this paper in CoChat — free account Open PDF

Abstract

Given the worldwide epidemic of diet-related chronic diseases, evidence-based dietary recommendations are fundamentally important for health promotion. Despite the importance of the human gut microbiota for the physiological effects of diet and chronic disease etiology, national dietary guidelines around the world are just beginning to capitalize on scientific breakthroughs in the microbiome field. In this review, we discuss contemporary nutritional recommendations from a microbiome science perspective, focusing on mechanistic evidence that established host-microbe interactions as mediators of the physiological effects of diet. We apply this knowledge to inform discussions of nutrition controversies, advance innovative dietary strategies, and propose an experimental framework that integrates the microbiome into nutrition research. The congruence of key paradigms in the nutrition and microbiome disciplines validates current recommendations in dietary guidelines, and the systematic incorporation of microbiome science into nutrition research has the potential to further improve and innovate healthy eating.

Integrity signals

Registry

Crossref · 10.1016/j.chom.2022.04.016

Cites

192 of 192 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Food in the Anthropocene: the EAT–Lancet Commission on healthy diets from sustainable food systems
Willett, W., Rockström, J., Loken, B., Springmann, M., Lang, T., Vermeulen, S., Garnett, T., Tilman, D., DeClerck, F., Wood, A., et al. (2019) · The Lancet · doi:10.1016/s0140-6736(18)31788-4 · Cited by 10,880
Untitled work
Hill (2014) · doi:10.1038/nrgastro.2014.66 · Cited by 9,592
Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics
Gibson, G. R., Hutkins, R., Sanders, M. E., Prescott, S. L., Reimer, R. A., Salminen, S. J., Scott, K., Stanton, C., Swanson, K. S., Cani, P. D., et al. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.75 · Cited by 5,634
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., et al. (2011) · Nature · doi:10.1038/nature09922 · Cited by 5,597
Gut microbiota in health and disease
Sekirov, I., Russell, S. L., Antunes, L. C. M., & Finlay, B. B. (2010) · Physiological Reviews · doi:10.1152/physrev.00045.2009 · Cited by 4,182
Personalized nutrition by prediction of glycemic responses
Zeevi, D., Korem, T., Zmora, N., Israeli, D., Rothschild, D., Weinberger, A., Ben-Yacov, O., Lador, D., Avnit-Sagi, T., Lotan-Pompan, M., et al. (2015) · Cell · doi:10.1016/j.cell.2015.11.001 · Cited by 2,929
The gut microbiota, bacterial metabolites and colorectal cancer
Louis, P., Hold, G. L., & Flint, H. J. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3344 · Cited by 2,917
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Desai, M. S., Seekatz, A. M., Koropatkin, N. M., Kamada, N., Hickey, C. A., Wolter, M., Pudlo, N. A., Kitamoto, S., Terrapon, N., Muller, A., et al. (2016) · Cell · doi:10.1016/j.cell.2016.10.043 · Cited by 2,805
Mechanisms underlying the resistance to diet-induced obesity in germ-free mice
Bäckhed, F., Manchester, J. K., Semenkovich, C. F., & Gordon, J. I. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605374104 · Cited by 2,615
Changes in diet and lifestyle and long-term weight gain in women and men
Mozaffarian, D., Hao, T., Rimm, E. B., Willett, W. C., & Hu, F. B. (2011) · New England Journal of Medicine · doi:10.1056/nejmoa1014296 · Cited by 2,527
The impact of dietary fiber on gut microbiota in host health and disease
Makki, K., Deehan, E. C., Walter, J., & Bäckhed, F. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.05.012 · Cited by 2,517
Self-citation
Fruit and vegetable intake and the risk of cardiovascular disease, total cancer and all-cause mortality - a systematic review and dose-response meta-analysis of prospective studies
Aune, D., Giovannucci, E., Boffetta, P., Fadnes, L. T., Keum, N., Norat, T., Greenwood, D. C., Riboli, E., Vatten, L. J., & Tonstad, S. (2017) · International Journal of Epidemiology · doi:10.1093/ije/dyw319 · Cited by 2,419
Population-level analysis of gut microbiome variation
Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., Kurilshikov, A., Bonder, M. J., Valles-Colomer, M., Vandeputte, D., et al. (2016) · Science · doi:10.1126/science.aad3503 · Cited by 2,400
Origins and evolution of the Western diet: health implications for the 21st century1,2
Cordain, L., Eaton, S. B., Sebastian, A., Mann, N., Lindeberg, S., Watkins, B. A., O’Keefe, J. H., & Brand-Miller, J. (2005) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn.81.2.341 · Cited by 2,397
Gut microbiome and health: mechanistic insights
de Vos, W. M., Tilg, H., Van Hul, M., & Cani, P. D. (2022) · Gut · doi:10.1136/gutjnl-2021-326789 · Cited by 2,388
Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: A proof-of-concept exploratory study
Depommier, C., Everard, A., Druart, C., Plovier, H., Van Hul, M., Vieira-Silva, S., Falony, G., Raes, J., Maiter, D., Delzenne, N. M., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0495-2 · Cited by 2,357
Weight Loss with a Low-Carbohydrate, Mediterranean, or Low-Fat Diet
Shai, I., Schwarzfuchs, D., Henkin, Y., Shahar, D. R., Witkow, S., Greenberg, I., Golan, R., Fraser, D., Bolotin, A., Vardi, H., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0708681 · Cited by 2,143
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
Chassaing, B., Koren, O., Goodrich, J. K., Poole, A. C., Srinivasan, S., Ley, R. E., & Gewirtz, A. T. (2015) · Nature · doi:10.1038/nature14232 · Cited by 2,055
Ultra-Processed Diets Cause Excess Calorie Intake and Weight Gain: An Inpatient Randomized Controlled Trial of Ad Libitum Food Intake
Hall, K. D., Ayuketah, A., Brychta, R., Cai, H., Cassimatis, T., Chen, K. Y., Chung, S. T., Costa, E., Courville, A., Darcey, V., et al. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.05.008 · Cited by 1,971
Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk
Zhu, W., Gregory, J. C., Org, E., Buffa, J. A., Gupta, N., Wang, Z., Li, L., Fu, X., Wu, Y., Mehrabian, M., et al. (2016) · Cell · doi:10.1016/j.cell.2016.02.011 · Cited by 1,968
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
Dao, M. C., Everard, A., Aron-Wisnewsky, J., Sokolovska, N., Prifti, E., Verger, E. O., Kayser, B. D., Levenez, F., Chilloux, J., Hoyles, L., et al. (2016) · Gut · doi:10.1136/gutjnl-2014-308778 · Cited by 1,931
Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice
Devkota, S., Wang, Y., Musch, M. W., Leone, V., Fehlner-Peach, H., Nadimpalli, A., Antonopoulos, D. A., Jabri, B., & Chang, E. B. (2012) · Nature · doi:10.1038/nature11225 · Cited by 1,904
Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella
Kovatcheva-Datchary, P., Nilsson, A., Akrami, R., Lee, Y. S., De Vadder, F., Arora, T., Hallen, A., Martens, E., Björck, I., & Bäckhed, F. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.10.001 · Cited by 1,731
Carbohydrate quality and human health: a series of systematic reviews and meta-analyses
Reynolds, A., Mann, J., Cummings, J., Winter, N., Mete, E., & Te Morenga, L. (2019) · The Lancet · doi:10.1016/s0140-6736(18)31809-9 · Cited by 1,630
Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer
Yachida, S., Mizutani, S., Shiroma, H., Shiba, S., Nakajima, T., Sakamoto, T., Watanabe, H., Masuda, K., Nishimoto, Y., Kubo, M., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0458-7 · Cited by 1,429
Gut-microbiota-targeted diets modulate human immune status
Wastyk, H. C., Fragiadakis, G. K., Perelman, D., Dahan, D., Merrill, B. D., Yu, F. B., Topf, M., Gonzalez, C. G., Van Treuren, W., Han, S., et al. (2021) · Cell · doi:10.1016/j.cell.2021.06.019 · Cited by 1,385
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Wirbel, J., Pyl, P. T., Kartal, E., Zych, K., Kashani, A., Milanese, A., Fleck, J. S., Voigt, A. Y., Palleja, A., Ponnudurai, R., et al. (2019) · Nature Medicine · doi:10.1038/s41591-019-0406-6 · Cited by 1,373
Paleolithic Nutrition
Eaton, S. B., & Konner, M. J. (1985) · New England Journal of Medicine · doi:10.1056/nejm198501313120505 · Cited by 1,364
Impact of the Gut Microbiota on Intestinal Immunity Mediated by Tryptophan Metabolism
Gao, J., Xu, K., Liu, H., Liu, G., Bai, M., Peng, C., Li, T., & Yin, Y. (2018) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2018.00013 · Cited by 1,348
Salt-responsive gut commensal modulates TH17 axis and disease
Wilck, N., Matus, M. G., Kearney, S. M., Olesen, S. W., Forslund, K., Bartolomaeus, H., Haase, S., Mähler, A., Balogh, A., Markó, L., et al. (2017) · Nature · doi:10.1038/nature24628 · Cited by 1,310
Definition of the Mediterranean Diet; A Literature Review
Davis, C. R., Bryan, J., Hodgson, J. M., & Murphy, K. J. (2015) · Nutrients · doi:10.3390/nu7115459 · Cited by 1,272
Ultra‐processed foods and the nutrition transition: global, regional and national trends, food systems transformations and political economy drivers
Baker, P., Machado, P., Santos, T., Sievert, K., Backholer, K., Hadjikakou, M., Russell, C., Huse, O., Bell, C., Scrinis, G., et al. (2020) · Obesity Reviews · doi:10.1111/obr.13126 · Cited by 1,194
The obesity transition: stages of the global epidemic
Jaacks, L. M., Vandevijvere, S., Pan, A., McGowan, C. J., Wallace, C., Imamura, F., Mozaffarian, D., Swinburn, B., & Ezzati, M. (2019) · The Lancet Diabetes & Endocrinology · doi:10.1016/s2213-8587(19)30026-9 · Cited by 1,193
A polyphenol-rich cranberry extract protects from diet-induced obesity, insulin resistance and intestinal inflammation in association with increased Akkermansia spp. population in the gut microbiota of mice
Anhê, F. F., Roy, D., Pilon, G., Dudonné, S., Matamoros, S., Varin, T. V., Garofalo, C., Moine, Q., Desjardins, Y., Levy, E., et al. (2015) · Gut · doi:10.1136/gutjnl-2014-307142 · Cited by 1,137
Short chain fatty acids in human gut and metabolic health
Blaak, E. E., Canfora, E. E., Theis, S., Frost, G., Groen, A. K., Mithieux, G., Nauta, A., Scott, K., Stahl, B., van Harsselaar, J., et al. (2020) · Beneficial Microbes · doi:10.3920/bm2020.0057 · Cited by 1,103
Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila
Cani, P. D., & de Vos, W. M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01765 · Cited by 1,058
The World Cancer Research Fund/American Institute for Cancer Research Third Expert Report on Diet, Nutrition, Physical Activity, and Cancer: Impact and Future Directions
Clinton, S. K., Giovannucci, E. L., & Hursting, S. D. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz268 · Cited by 1,047
Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
Vandeputte, D., Falony, G., Vieira-Silva, S., Tito, R. Y., Joossens, M., & Raes, J. (2016) · Gut · doi:10.1136/gutjnl-2015-309618 · Cited by 1,028
Whole grain consumption and risk of cardiovascular disease, cancer, and all cause and cause specific mortality: systematic review and dose-response meta-analysis of prospective studies
Aune, D., Keum, N., Giovannucci, E., Fadnes, L. T., Boffetta, P., Greenwood, D. C., Tonstad, S., Vatten, L. J., Riboli, E., & Norat, T. (2016) · BMJ · doi:10.1136/bmj.i2716 · Cited by 1,013
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
Asnicar, F., Berry, S. E., Valdes, A. M., Nguyen, L. H., Piccinno, G., Drew, D. A., Leeming, E., Gibson, R., Le Roy, C., Khatib, H. A., et al. (2021) · Nature Medicine · doi:10.1038/s41591-020-01183-8 · Cited by 995
Mediterranean Diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries
Ghosh, T. S., Rampelli, S., Jeffery, I. B., Santoro, A., Neto, M., Capri, M., Giampieri, E., Jennings, A., Candela, M., Turroni, S., et al. (2020) · Gut · doi:10.1136/gutjnl-2019-319654 · Cited by 991
Fat, fibre and cancer risk in African Americans and rural Africans
O’Keefe, S. J. D., Li, J. V., Lahti, L., Ou, J., Carbonero, F., Mohammed, K., Posma, J. M., Kinross, J., Wahl, E., Ruder, E., et al. (2015) · Nature Communications · doi:10.1038/ncomms7342 · Cited by 982
Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling
Caesar, R., Tremaroli, V., Kovatcheva-Datchary, P., Cani, P. D., & Bäckhed, F. (2015) · Cell Metabolism · doi:10.1016/j.cmet.2015.07.026 · Cited by 960
The international scientific association for probiotics and prebiotics (ISAPP) consensus statement on fermented foods
Marco, M. L., Sanders, M. E., Gänzle, M., Arrieta, M. C., Cotter, P. D., De Vuyst, L., Hill, C., Holzapfel, W., Lebeer, S., Merenstein, D., et al. (2021) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-020-00390-5 · Cited by 937
Human postprandial responses to food and potential for precision nutrition
Berry, S. E., Valdes, A. M., Drew, D. A., Asnicar, F., Mazidi, M., Wolf, J., Capdevila, J., Hadjigeorgiou, G., Davies, R., Al Khatib, H., et al. (2020) · Nature Medicine · doi:10.1038/s41591-020-0934-0 · Cited by 932
Starving our Microbial Self: The Deleterious Consequences of a Diet Deficient in Microbiota-Accessible Carbohydrates
Sonnenburg, E. D., & Sonnenburg, J. L. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.07.003 · Cited by 898
A global review of food-based dietary guidelines
Herforth, A., Arimond, M., Álvarez-Sánchez, C., Coates, J., Christianson, K., & Muehlhoff, E. (2019) · Advances in Nutrition · doi:10.1093/advances/nmy130 · Cited by 848
Role of the microbiome in human development
Domínguez-Bello, M. G., Godoy‐Vitorino, F., Knight, R. D., & Blaser, M. J. (2019) · Gut · doi:10.1136/gutjnl-2018-317503 · Cited by 820
Bifidobacteria-mediated immune system imprinting early in life
Henrick, B. M., Rodriguez, L., Lakshmikanth, T., Pou, C., Henckel, E., Arzoomand, A., Olin, A., Wang, J., Mikeš, J., Tan, Z., et al. (2021) · Cell · doi:10.1016/j.cell.2021.05.030 · Cited by 808
Detection of Lactobacillus, Pediococcus, Leuconostoc , and Weissella Species in Human Feces by Using Group-Specific PCR Primers and Denaturing Gradient Gel Electrophoresis
Walter, J., Hertel, C., Tannock, G. W., Lis, C. M., Munro, K., & Hammes, W. P. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.6.2578-2585.2001 · Cited by 782
Self-citation
The Western Diet–Microbiome-Host Interaction and Its Role in Metabolic Disease
Zinöcker, M. K., & Lindseth, I. A. (2018) · doi:10.20944/preprints201803.0064.v1 · Cited by 776
Dietary carbohydrate intake and mortality: a prospective cohort study and meta-analysis
Seidelmann, S. B., Claggett, B., Cheng, S., Henglin, M., Shah, A., Steffen, L. M., Folsom, A. R., Rimm, E. B., Willett, W. C., & Solomon, S. D. (2018) · The Lancet Public Health · doi:10.1016/s2468-2667(18)30135-x · Cited by 776
High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health
Russell, W. R., Gratz, S. W., Duncan, S. H., Holtrop, G., Ince, J., Scobbie, L., Duncan, G., Johnstone, A. M., Lobley, G. E., Wallace, R. J., et al. (2011) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.110.002188 · Cited by 775
Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research
Walter, J. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00753-08 · Cited by 756
Self-citation
Daily sampling reveals personalized diet-microbiome associations in humans
Johnson, A. J., Vangay, P., Al-Ghalith, G. A., Hillmann, B. M., Ward, T. L., Shields-Cutler, R. R., Kim, A. D., Shmagel, A. K., Syed, A. N., Walter, J., et al. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.05.005 · Cited by 742
Self-citation
How Western Diet And Lifestyle Drive The Pandemic Of Obesity And Civilization Diseases
Kopp, W. (2019) · Diabetes Metabolic Syndrome and Obesity · doi:10.2147/dmso.s216791 · Cited by 717
Effect of Low-Fat vs Low-Carbohydrate Diet on 12-Month Weight Loss in Overweight Adults and the Association With Genotype Pattern or Insulin Secretion: The DIETFITS Randomized Clinical Trial
Gardner, C. D., Trepanowski, J. F., Del Gobbo, L. C., Hauser, M. E., Rigdon, J., Ioannidis, J. P. A., Desai, M., & King, A. C. (2018) · JAMA · doi:10.1001/jama.2018.0245 · Cited by 709
The association between breastfeeding and childhood obesity: a meta-analysis
Yan, J., Liu, L., Zhu, Y., Huang, G., & Wang, P. (2014) · BMC Public Health · doi:10.1186/1471-2458-14-1267 · Cited by 686
Human milk glycobiome and its impact on the infant gastrointestinal microbiota
Zivkovic, A. M., German, J. B., Lebrilla, C. B., & Mills, D. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000083107 · Cited by 679
Personalised nutrition and health
Ordovás, J. M., Ferguson, L. R., Tai, E. S., & Mathers, J. C. (2018) · BMJ · doi:10.1136/bmj.k2173 · Cited by 634
Gut microbiota associations with common diseases and prescription medications in a population-based cohort
Jackson, M. A., Verdi, S., Maxan, M.-E., Shin, C. M., Zierer, J., Bowyer, R. C. E., Martin, T., Williams, F. M. K., Menni, C., Bell, J. T., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-05184-7 · Cited by 616
Gut microbiome composition is linked to whole grain-induced immunological improvements
Martínez, I., Lattimer, J. M., Hubach, K. L., Case, J. A., Yang, J., Weber, C. G., Louk, J. A., Rose, D. J., Kyureghian, G., Peterson, D. A., et al. (2013) · The ISME Journal · doi:10.1038/ismej.2012.104 · Cited by 614
Self-citation
Host variables confound gut microbiota studies of human disease
Vujkovic-Cvijin, I., Sklar, J., Jiang, L., Natarajan, L., Knight, R., & Belkaid, Y. (2020) · Nature · doi:10.1038/s41586-020-2881-9 · Cited by 614
A Perspective on the Complexity of Dietary Fiber Structures and Their Potential Effect on the Gut Microbiota
Hamaker, B. R., & Tuncil, Y. E. (2014) · Journal of Molecular Biology · doi:10.1016/j.jmb.2014.07.028 · Cited by 601
Effects of dietary fat on gut microbiota and faecal metabolites, and their relationship with cardiometabolic risk factors: a 6-month randomised controlled-feeding trial
Wan, Y., Wang, F., Yuan, J., Li, J., Jiang, D., Zhang, J., Li, H., Wang, R., Tang, J., Huang, T., et al. (2019) · Gut · doi:10.1136/gutjnl-2018-317609 · Cited by 598
Diversification of host bile acids by members of the gut microbiota
Winston, J. A., & Theriot, C. M. (2019) · Gut Microbes · doi:10.1080/19490976.2019.1674124 · Cited by 596
Establishing or Exaggerating Causality for the Gut Microbiome: Lessons from Human Microbiota-Associated Rodents
Walter, J., Armet, A. M., Finlay, B. B., & Shanahan, F. (2020) · Cell · doi:10.1016/j.cell.2019.12.025 · Cited by 596
Self-citation
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
Qin, Y., Havulinna, A. S., Liu, Y., Jousilahti, P., Ritchie, S. C., Tokolyi, A., Sanders, J. G., Valsta, L., Brożyńska, M., Zhu, Q., et al. (2022) · Nature Genetics · doi:10.1038/s41588-021-00991-z · Cited by 586
Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake
Meslier, V., Laiola, M., Roager, H. M., De Filippis, F., Roume, H., Quinquis, B., Giacco, R., Mennella, I., Ferracane, R., Pons, N., et al. (2020) · Gut · doi:10.1136/gutjnl-2019-320438 · Cited by 583
Fiber-Mediated Nourishment of Gut Microbiota Protects against Diet-Induced Obesity by Restoring IL-22-Mediated Colonic Health
Zou, J., Chassaing, B., Singh, V., Pellizzon, M., Ricci, M. R., Flythe, M. D. D., Kumar, M. V., & Gewirtz, A. T. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.11.003 · Cited by 570
Bilophila wadsworthia aggravates high fat diet induced metabolic dysfunctions in mice
Natividad, J. M., Lamas, B., Pham, H., Michel, M., Rainteau, D. P., Bridonneau, C., Costa, G. D., Vlieg, J. V. H., Sovran, B., Chamignon, C., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-05249-7 · Cited by 559
Precision Microbiome Modulation with Discrete Dietary Fiber Structures Directs Short-Chain Fatty Acid Production
Deehan, E. C., Yang, C., Pérez-Muñoz, M. E., Nguyen, N. K., Cheng, C. C., Triador, L., Zhang, Z., Bakal, J. A., & Walter, J. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.01.006 · Cited by 558
Self-citation
DRI, Dietary reference intakes : the essential guide to nutrient requirements
Otten, J. J., Hellwig, J. P., & Meyers, L. (2006) · Cited by 539
Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome
Maldonado-Gómez, M. X., Martínez, I., Bottacini, F., O’Callaghan, A., Ventura, M., van Sinderen, D., Hillmann, B., Vangay, P., Knights, D., Hutkins, R. W., et al. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.09.001 · Cited by 517
Self-citation
The ancestral and industrialized gut microbiota and implications for human health
Sonnenburg, E. D., & Sonnenburg, J. L. (2019) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0191-8 · Cited by 489
History of modern nutrition science—implications for current research, dietary guidelines, and food policy
Mozaffarian, D., Rosenberg, I., & Uauy, R. (2018) · BMJ · doi:10.1136/bmj.k2392 · Cited by 484
Trimethylamine N -Oxide, the Microbiome, and Heart and Kidney Disease
Zeisel, S. H., & Warrier, M. (2017) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-071816-064732 · Cited by 475
Position of the Academy of Nutrition and Dietetics: Health implications of dietary fiber
Dahl, W. J., & Stewart, M. L. (2015) · Journal of the Academy of Nutrition and Dietetics · doi:10.1016/j.jand.2015.09.003 · Cited by 471
Whole Grains and Phenolic Acids: A Review on Bioactivity, Functionality, Health Benefits and Bioavailability
Călinoiu, L. F., & Vodnar, D. C. (2018) · Nutrients · doi:10.3390/nu10111615 · Cited by 465
Effects of dietary fibre on subjective appetite, energy intake and body weight: a systematic review of randomized controlled trials
Wanders, A. J., van den Borne, J. J. G. C., de Graaf, C., Hulshof, T. G., Jonathan, M. C., Kristensen, M., Mars, M., Schols, H. A., & Feskens, E. J. M. (2011) · Obesity Reviews · doi:10.1111/j.1467-789x.2011.00895.x · Cited by 461
Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome
Mars, R. A. T., Yang, Y., Ward, T., Houtti, M., Priya, S., Lekatz, H. R., Tang, X., Sun, Z., Kalari, K. R., Korem, T., et al. (2020) · Cell · doi:10.1016/j.cell.2020.08.007 · Cited by 456
Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial
Roager, H. M., Vogt, J. K., Kristensen, M., Hansen, L. B. S., Ibrügger, S., Mærkedahl, R. B., Bahl, M. I., Lind, M. V., Nielsen, R. L., Frøkiær, H., et al. (2017) · Gut · doi:10.1136/gutjnl-2017-314786 · Cited by 447
Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon
Ijssennagger, N., Belzer, C., Hooiveld, G. J. E. J., Dekker, J. P., van Mil, S. W. C., Müller, M. M., Kleerebezem, M., & van der Meer, R. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1507645112 · Cited by 444
Quantitative imaging of gut microbiota spatial organization
Earle, K. A., Billings, G., Sigal, M., Lichtman, J. S., Hansson, G. C., Elias, J. E., Amieva, M. R., Huang, K. C., & Sonnenburg, J. L. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.09.002 · Cited by 433
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
Gehrig, J. L., Venkatesh, S., Chang, H.-W., Hibberd, M. C., Kung, V. L., Cheng, J., Chen, R. Y., Subramanian, S., Cowardin, C. A., Meier, M. F., et al. (2019) · Science · doi:10.1126/science.aau4732 · Cited by 431
Position of the Academy of Nutrition and Dietetics: Dietary Fatty Acids for Healthy Adults
Vannice, G. K., & Rasmussen, H. E. (2013) · Journal of the Academy of Nutrition and Dietetics · doi:10.1016/j.jand.2013.11.001 · Cited by 423
Human milk oligosaccharides are resistant to enzymatic hydrolysis in the upper gastrointestinal tract
Engfer, M., Stahl, B., Finke, B., Sawatzki, G., & Daniel, H. (2000) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/71.6.1589 · Cited by 412
Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults
de la Cuesta‐Zuluaga, J., Kelley, S. T., Chen, Y., Escobar, J. S., Mueller, N. T., Ley, R. E., McDonald, D. T., Huang, S. W., Swafford, A. D.-E., Knight, R. D., et al. (2019) · mSystems · doi:10.1128/msystems.00261-19 · Cited by 410
A Systematic Review of Worldwide Consumption of Ultra-Processed Foods: Findings and Criticisms
Marino, M., Puppo, F., Bo’, C. D., Vinelli, V., Riso, P., Porrini, M., & Martini, D. (2021) · Nutrients · doi:10.3390/nu13082778 · Cited by 387
The gut microbiome modulates the protective association between a Mediterranean diet and cardiometabolic disease risk
Wang, D. D., Nguyen, L. H., Li, Y., Yan, Y., Ma, W., Rinott, E., Ivey, K. L., Shai, I., Willett, W. C., Hu, F. B., et al. (2021) · Nature Medicine · doi:10.1038/s41591-020-01223-3 · Cited by 386
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity
Mills, R. H., Dulai, P. S., Vázquez-Baeza, Y., Sauceda, C., Daniel, N., Gerner, R. R., Batachari, L. E., Malfavon, M., Zhu, Q., Weldon, K., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-021-01050-3 · Cited by 385
Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome
Liu, X., Tong, X., Zou, Y., Lin, X., Zhao, H., Tian, L., Jie, Z., Wang, Q., Zhang, Z., Lu, H., et al. (2022) · Nature Genetics · doi:10.1038/s41588-021-00968-y · Cited by 383
Behavioral Counseling to Promote a Healthful Diet and Physical Activity for Cardiovascular Disease Prevention in Adults Without Known Cardiovascular Disease Risk Factors: Updated Evidence Report and Systematic Review for the US Preventive Services Task Force
Patnode, C. D., Evans, C. V., Senger, C. A., Redmond, N., & Lin, J. S. (2017) · JAMA · doi:10.1001/jama.2017.3303 · Cited by 380
Ultra-processed Foods and Cardiovascular Diseases: Potential Mechanisms of Action
Juul, F., Vaidean, G., & Parekh, N. (2021) · Advances in Nutrition · doi:10.1093/advances/nmab049 · Cited by 374
Secondary bile acids: an underrecognized cause of colon cancer
Ajouz, H., Mukherji, D., & Shamseddine, A. I. (2014) · World Journal of Surgical Oncology · doi:10.1186/1477-7819-12-164 · Cited by 373
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Pasolli, E., De Filippis, F., Mauriello, I. E., Cumbo, F., Walsh, A. M., Leech, J., Cotter, P. D., Segata, N., & Ercolini, D. (2020) · Nature Communications · doi:10.1038/s41467-020-16438-8 · Cited by 367
Ultra-Processed Foods: Definitions and Policy Issues
Gibney, M. J. (2018) · Current Developments in Nutrition · doi:10.1093/cdn/nzy077 · Cited by 352
Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome
Chassaing, B., Compher, C., Bonhomme, B., Liu, Q., Tian, Y., Walters, W., Nessel, L., Delaroque, C., Hao, F., Gershuni, V., et al. (2022) · Gastroenterology · doi:10.1053/j.gastro.2021.11.006 · Cited by 347
The Long-Term Genetic Stability and Individual Specificity of the Human Gut Microbiome
Chen, L., Wang, D., Garmaeva, S., Kurilshikov, A., Vila, A. V., Gaćeša, R., Sinha, T., Study, L. C., Segal, E., Weersma, R. K., et al. (2020) · Cell · doi:10.1016/j.cell.2021.03.024 · Cited by 344
Yogurt, cultured fermented milk, and health: A systematic review
Savaiano, D. A., & Hutkins, R. W. (2021) · Nutrition Reviews · doi:10.1093/nutrit/nuaa013 · Cited by 339
Unprocessed Red Meat and Processed Meat Consumption: Dietary Guideline Recommendations From the Nutritional Recommendations (NutriRECS) Consortium
Johnston, B. C., Zeraatkar, D., Han, M. A., Vernooij, R. W. M., Valli, C., Dib, R. E., Marshall, C., Stover, P. J., Fairweather‐Tait, S. J., Wójcik, G., et al. (2019) · Annals of Internal Medicine · doi:10.7326/m19-1621 · Cited by 322
The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans
Rosa, S. L. L., Leth, M. L., Michalak, L., Ejby, M., Pudlo, N. A., Glowacki, R. W. P., Pereira, G. V., Workman, C. T., Arntzen, M. Ø., Pope, P. B., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-08812-y · Cited by 308
High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production
Miranda, P. M., Palma, G. D., Serkis, V., Lu, J., Louis-Auguste, M., McCarville, J. L., Verdu, E. F., Collins, S. M., & Berčík, P. (2018) · Microbiome · doi:10.1186/s40168-018-0433-4 · Cited by 302
Dietary fat, the gut microbiota, and metabolic health – A systematic review conducted within the MyNewGut project
Wolters, M., Ahrens, J., Romaní-Pérez, M., Watkins, C., Sanz, Y., Benítez-Páez, A., Stanton, C., & Günther, K. (2019) · Clinical Nutrition · doi:10.1016/j.clnu.2018.12.024 · Cited by 299
Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions
McBurney, M. I., Davis, C. D., Fraser, C. M., Schneeman, B. O., Huttenhower, C., Verbeke, K., Walter, J., & Latulippe, M. E. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz154 · Cited by 296
Self-citation
The carbohydrate-insulin model: A physiological perspective on the obesity pandemic
Ludwig, D. S., Aronne, L. J., Astrup, A., de Cabo, R., Cantley, L. C., Friedman, M. I., Heymsfield, S. B., Johnson, J. D., King, J. C., Krauss, R. M., et al. (2021) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqab270 · Cited by 292
Superfruits: Phytochemicals, antioxidant efficacies, and health effects – A comprehensive review
Chang, S. K., Alasalvar, C., & Shahidi, F. (2018) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2017.1422111 · Cited by 281
Substituting whole grains for refined grains in a 6-wk randomized trial has a modest effect on gut microbiota and immune and inflammatory markers of healthy adults
Vanegas, S. M., Meydani, M., Barnett, J. B., Goldin, B., Kane, A., Rasmussen, H., Brown, C., Vangay, P., Knights, D., Jonnalagadda, S., et al. (2017) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.116.146928 · Cited by 277
Decreasing antibiotic use, the gut microbiota, and asthma incidence in children: evidence from population-based and prospective cohort studies
Patrick, D. M., Sbihi, H., Dai, D. L., Mamun, A. A., Rasali, D. P., Rose, C., Marra, F., Boutin, R. C. T., Petersen, C., Stiemsma, L. T., et al. (2020) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(20)30052-7 · Cited by 267
Dietary fat, bile acid metabolism and colorectal cancer
Ocvirk, S., & O’Keefe, S. J. (2020) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2020.10.003 · Cited by 265
Paleolithic Nutrition
Konner, M. J., & Eaton, S. B. (2010) · Nutrition in Clinical Practice · doi:10.1177/0884533610385702 · Cited by 263
Microbiome: Focus on Causation and Mechanism
Fischbach, M. A. (2018) · Cell · doi:10.1016/j.cell.2018.07.038 · Cited by 255
Dietary Fibers from Fruits and Vegetables and Their Health Benefits via Modulation of Gut Microbiota
Cui, J., Lian, Y., Zhao, C., Du, H., Han, Y., Gao, W. Y., Xiao, H., & Zheng, J. (2019) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12489 · Cited by 255
Scientific Report of the 2020 Dietary Guidelines Advisory Committee: Advisory Report to the Secretary of Agriculture and Secretary of Health and Human Services
(2020) · doi:10.52570/dgac2020 · Cited by 253
Human Microbiota-Associated Mice: A Model with Challenges
Arrieta, M., Walter, J., & Finlay, B. B. (2016) · Cell Host & Microbe · doi:10.1016/j.chom.2016.04.014 · Cited by 246
Self-citation
The relationship between phenolic compounds from diet and microbiota: impact on human health
Valdés, L., Cuervo, A. J. V., Salazar, N., Ruas‐Madiedo, P., Gueimonde, M., & González, S. (2015) · Food & Function · doi:10.1039/c5fo00322a · Cited by 242
Modulation of the Gastrointestinal Microbiome with Nondigestible Fermentable Carbohydrates To Improve Human Health
Deehan, E. C., Duar, R. M., Armet, A. M., Pérez-Muñoz, M. E., Jin, M., & Walter, J. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.bad-0019-2017 · Cited by 237
Self-citation
Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Ghosh, T. S., Das, M., Jeffery, I. B., & O'Toole, P. W. (2020) · eLife · doi:10.7554/elife.50240 · Cited by 233
The Fiber Gap and the Disappearing Gut Microbiome: Implications for Human Nutrition
Deehan, E. C., & Walter, J. (2016) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2016.03.001 · Cited by 230
Self-citation
Structural and functional characteristics of dietary fibre in beans, lentils, peas and chickpeas
Brummer, Y., Kaviani, M., & Tosh, S. M. (2014) · Food Research International · doi:10.1016/j.foodres.2014.11.009 · Cited by 219
Evolution of the human diet: Linking our ancestral diet to modern functional foods as a means of chronic disease prevention
Jew, S., AbuMweis, S. S., & Jones, P. J. H. (2009) · Journal of Medicinal Food · doi:10.1089/jmf.2008.0268 · Cited by 219
The ancestral human diet: what was it and should it be a paradigm for contemporary nutrition?
Eaton, S. B. (2006) · Proceedings of The Nutrition Society · doi:10.1079/pns2005471 · Cited by 201
Effects of a diet based on inulin-rich vegetables on gut health and nutritional behavior in healthy humans
Hiel, S., Bindels, L. B., Pachikian, B. D., Kalala, G., Broers, V., Zamariola, G., Chang, B. P. I., Kambashi, B., Rodriguez, J., Cani, P. D., et al. (2019) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqz001 · Cited by 197
The Effect of Low-Fat and Low-Carbohydrate Diets on Weight Loss and Lipid Levels: A Systematic Review and Meta-Analysis
Chawla, S., Tessarolo Silva, F., Amaral Medeiros, S., Mekary, R., & Radenkovic, D. (2020) · Nutrients · doi:10.3390/nu12123774 · Cited by 185
Link between gut microbiota and health outcomes in inulin -treated obese patients: Lessons from the Food4Gut multicenter randomized placebo-controlled trial
Hiel, S., Gianfrancesco, M. A., Rodriguez, J., Portheault, D., Leyrolle, Q., Bindels, L. B., Cauduro, C. G. D. S., Mulders, M. D. G. H., Zamariola, G., Azzi, A., et al. (2020) · Clinical Nutrition · doi:10.1016/j.clnu.2020.04.005 · Cited by 183
Walnut consumption alters the gastrointestinal microbiota, microbially derived secondary bile acids, and health markers in healthy adults: a randomized controlled trial
Holscher, H. D., Guetterman, H. M., Swanson, K. S., An, R., Matthan, N. R., Lichtenstein, A. H., Novotny, J. A., & Baer, D. J. (2018) · The Journal of Nutrition · doi:10.1093/jn/nxy004 · Cited by 182
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
Salosensaari, A., Laitinen, V., Havulinna, A. S., Méric, G., Cheng, S. C., Perola, M., Valsta, L. M., Alfthan, G., Inouye, M., Watrous, J. D., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-22962-y · Cited by 176
Effect of a very-high-fiber vegetable, fruit, and nut diet on serum lipids and colonic function
Jenkins, D. J. A., Kendall, C. W. C., Popovich, D. G., Vidgen, E., Mehling, C. C., Vuksan, V. V. V., Ransom, T. P. P., Rao, A. V., Zand, R. S. R., Tariq, N. A., et al. (2001) · Metabolism · doi:10.1053/meta.2001.21037 · Cited by 169
A Guide to Diet-Microbiome Study Design
Johnson, A. J., Zheng, J. J., Kang, J. W., Saboe, A., Knights, D., & Zivkovic, A. M. (2020) · Frontiers in Nutrition · doi:10.3389/fnut.2020.00079 · Cited by 168
Benefits of Nut Consumption on Insulin Resistance and Cardiovascular Risk Factors: Multiple Potential Mechanisms of Actions
Kim, Y., Keogh, J. B., & Clifton, P. M. (2017) · Nutrients · doi:10.3390/nu9111271 · Cited by 161
Complementary effects of cereal and pulse polyphenols and dietary fiber on chronic inflammation and gut health
Awika, J. M., Rose, D. J., & Şimşek, Ş. (2018) · Food & Function · doi:10.1039/c7fo02011b · Cited by 161
Global Review of Dairy Recommendations in Food-Based Dietary Guidelines
Comerford, K. B., Miller, G. D., Boileau, A. C., Schuette, S. N. M., Giddens, J. C., & Brown, K. A. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.671999 · Cited by 160
1. An introduction to the revised food-based dietary guidelines for South Africa
Vorster, H., Badham, J., & Venter, C. S. (2013) · South African Journal of Clinical Nutrition · doi:10.1080/16070658.2013.12519335 · Cited by 159
A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont
Liou, C. S., Sirk, S. J., Diaz, C. A. C., Klein, A. P., Fischer, C. R., Higginbottom, S. K., Erez, A., Donia, M. S., Sonnenburg, J. L., & Sattely, E. S. (2020) · Cell · doi:10.1016/j.cell.2020.01.023 · Cited by 158
Impact of Gut Microbiota and Diet on the Development of Atherosclerosis in Apoe −/− Mice
Jonsson, A. L., Caesar, R., Akrami, R., Reinhardt, C., Hållenius, F. F., Borén, J., & Bäckhed, F. (2018) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.118.311233 · Cited by 157
Oligosaccharide Profile in Fruits and Vegetables as Sources of Prebiotics and Functional Foods
Jovanović-Malinovska, R., Kuzmanova, S., & Winkelhausen, E. (2013) · International Journal of Food Properties · doi:10.1080/10942912.2012.680221 · Cited by 156
Mediation Analysis: A Retrospective Snapshot of Practice and More Recent Directions
Gelfand, L. A., Mensinger, J. L., & TenHave, T. R. (2009) · The Journal of General Psychology · doi:10.3200/genp.136.2.153-178 · Cited by 152
Use of dietary indices to control for diet in human gut microbiota studies
Bowyer, R. C. E., Jackson, M. A., Pallister, T., Skinner, J., Spector, T. D., Welch, A. A., & Steves, C. J. (2018) · Microbiome · doi:10.1186/s40168-018-0455-y · Cited by 140
Broccoli consumption affects the human gastrointestinal microbiota
Kaczmarek, J. L., Liu, X., Charron, C. S., Novotny, J. A., Jeffery, E. H., Seifried, H. E., Ross, S. A., Miller, M. J., Swanson, K. S., & Holscher, H. D. (2018) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2018.09.015 · Cited by 139
Effect of diet and gut environment on the gastrointestinal formation of N -nitroso compounds: A review
Kobayashi, J. (2017) · Nitric Oxide · doi:10.1016/j.niox.2017.06.001 · Cited by 136
Perspective: Design and Conduct of Human Nutrition Randomized Controlled Trials
Lichtenstein, A. H., Petersen, K. S., Barger, K., Hansen, K. E., Anderson, C. A. M., Baer, D. J., Lampe, J. W., Rasmussen, H., & Matthan, N. R. (2020) · Advances in Nutrition · doi:10.1093/advances/nmaa109 · Cited by 136
The prebiotic effects of omega-3 fatty acid supplementation: A six-week randomised intervention trial
Vijay, A., Astbury, S., Roy, C. I. L., Spector, T. D., & Valdes, A. M. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1863133 · Cited by 131
Causal effects of the microbiota on immune-mediated diseases
Round, J. L., & Palm, N. W. (2018) · Science Immunology · doi:10.1126/sciimmunol.aao1603 · Cited by 129
Phytochemicals and Their Potential Usefulness in Inflammatory Bowel Disease
Somani, S. J., Modi, K., Majumdar, A. S., & Sadarani, B. N. (2015) · Phytotherapy Research · doi:10.1002/ptr.5271 · Cited by 127
Antimicrobial Emulsifier–Glycerol Monolaurate Induces Metabolic Syndrome, Gut Microbiota Dysbiosis, and Systemic Low‐Grade Inflammation in Low‐Fat Diet Fed Mice
Jiang, Z., Zhao, M., Zhang, H., Yang, L., Liu, M., & Feng, F. (2017) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201700547 · Cited by 126
Almond Consumption and Processing Affects the Composition of the Gastrointestinal Microbiota of Healthy Adult Men and Women: A Randomized Controlled Trial
Holscher, H., Taylor, A., Swanson, K., Novotny, J., & Baer, D. (2018) · Nutrients · doi:10.3390/nu10020126 · Cited by 126
Should There Be a Recommended Daily Intake of Microbes?
Marco, M. L., Hill, C., Hutkins, R. W., Slavin, J. L., Tancredi, D. J., Merenstein, D. J., & Sanders, M. E. (2020) · Journal of Nutrition · doi:10.1093/jn/nxaa323 · Cited by 121
Comparison with ancestral diets suggests dense acellular carbohydrates promote an inflammatory microbiota, and may be the primary dietary cause of leptin resistance and obesity
Spreadbury, I. (2012) · Diabetes Metabolic Syndrome and Obesity · doi:10.2147/dmso.s33473 · Cited by 119
Plasma levels of trimethylamine-N-oxide can be increased with ‘healthy’ and ‘unhealthy’ diets and do not correlate with the extent of atherosclerosis but with plaque instability
Koay, Y. C., Chen, Y., Wali, J. A., Luk, A. W. S., Li, M., Doma, H., Reimark, R., Zaldivia, M. T. K., Habtom, H. T., Franks, A. E., et al. (2020) · Cardiovascular Research · doi:10.1093/cvr/cvaa094 · Cited by 113
Elucidating the role of the gut microbiota in the physiological effects of dietary fiber
Deehan, E. C., Zhang, Z., Riva, A., Armet, A. M., Pérez-Muñoz, M. E., Nguyen, N. K., Krysa, J. A., Seethaler, B., Zhao, Y., Cole, J. L., et al. (2022) · Microbiome · doi:10.1186/s40168-022-01248-5 · Cited by 110
Self-citation
Increased Complexity of the Species Composition of Lactic Acid Bacteria in Human Feces Revealed by Alternative Incubation Condition
Bello, F. D., Walter, J., Hammes, W. P., & Hertel, C. (2003) · Microbial Ecology · doi:10.1007/s00248-003-2001-z · Cited by 106
Self-citation
Dietary Fibre Consensus from the International Carbohydrate Quality Consortium (ICQC)
Augustin, L. S. A., Aas, A., Astrup, A. V., Atkinson, F. S., Baer-Sinnott, S., Barclay, A. W., Brand-Miller, J. C., Brighenti, F., Bulló, M., Buyken, A. E., et al. (2020) · Nutrients · doi:10.3390/nu12092553 · Cited by 97
Prebiotics, Fermentable Dietary Fiber, and Health Claims
Delcour, J. A., Åman, P., Courtin, C. M., Hamaker, B. R., & Verbeke, K. (2016) · Advances in Nutrition · doi:10.3945/an.115.010546 · Cited by 96
Dietary mung bean protein reduces high-fat diet-induced weight gain by modulating host bile acid metabolism in a gut microbiota-dependent manner
Nakatani, A., Li, X., Miyamoto, J., Igarashi, M., Watanabe, H., Sutou, A., Watanabe, K., Motoyama, T., Tachibana, N., Kohno, M., et al. (2018) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2018.05.090 · Cited by 94
In vitro and in vivo inhibition of human flavin-containing monooxygenase form 3 (FMO3) in the presence of dietary indoles
Cashman, J. R., Xiong, Y., Lin, J., Verhagen, H., van Poppel, G., van Bladeren, P. J., Larsen-Su, S., & Williams, D. E. (1999) · Biochemical Pharmacology · doi:10.1016/s0006-2952(99)00166-5 · Cited by 93
Consumption of fish and vascular risk factors: A systematic review and meta-analysis of intervention studies
Alhassan, A., Young, J. A., Lean, M. E. J., & Lara, J. (2017) · Atherosclerosis · doi:10.1016/j.atherosclerosis.2017.09.028 · Cited by 93
Walnuts and Vegetable Oils Containing Oleic Acid Differentially Affect the Gut Microbiota and Associations with Cardiovascular Risk Factors: Follow-up of a Randomized, Controlled, Feeding Trial in Adults at Risk for Cardiovascular Disease
Tindall, A. M., McLimans, C. J., Petersen, K. S., Kris‐Etherton, P. M., & Lamendella, R. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz289 · Cited by 92
A framework for microbiome science in public health
Wilkinson, J. E., Franzosa, E. A., Everett, C., Li, C., trainees, H. R. A., Bae, S., Berzansky, I., Bhosle, A., Bjørnevik, K., Brennan, C. A., et al. (2021) · Nature Medicine · doi:10.1038/s41591-021-01258-0 · Cited by 92
Eliminate or reformulate ultra-processed foods? Biological mechanisms matter
Tobias, D. K., & Hall, K. D. (2021) · Cell Metabolism · doi:10.1016/j.cmet.2021.10.005 · Cited by 92
A great-ape view of the gut microbiome
Nishida, A. H., & Ochman, H. (2019) · Nature Reviews Genetics · doi:10.1038/s41576-018-0085-z · Cited by 84
Role of gut bacterial flora in nutrition and health: A review of recent advances in bacteriological techniques, metabolism, and factors affecting flora composition
BROWN, J. P., & Lamanna, C. (1977) · C R C Critical Reviews in Food Science and Nutrition · doi:10.1080/10408397709527224 · Cited by 75
Nuts and their effect on gut microbiota, gut function and symptoms in adults: a systematic review and meta-analysis of randomised controlled trials
Creedon, A. C., Hung, E. S., Berry, S. E., & Whelan, K. (2020) · Nutrients · doi:10.3390/nu12082347 · Cited by 75
Intake of Fish and Marine n-3 Polyunsaturated Fatty Acids and Risk of Cardiovascular Disease Mortality: A Meta-Analysis of Prospective Cohort Studies
Jiang, L., Wang, J., Xiong, K., Xu, L., Zhang, B., & Ma, A. (2021) · Nutrients · doi:10.3390/nu13072342 · Cited by 72
Potential Cardiometabolic Health Benefits of Full-Fat Dairy: The Evidence Base
Hirahatake, K. M., Astrup, A. V., Hill, J. O., Slavin, J. L., Allison, D. B., & Maki, K. C. (2019) · Advances in Nutrition · doi:10.1093/advances/nmz132 · Cited by 70
How causal are microbiomes? A comparison with the Helicobacter pylori explanation of ulcers
Lynch, K. E., Parke, E. C., & O’Malley, M. A. (2019) · Biology & Philosophy · doi:10.1007/s10539-019-9702-2 · Cited by 66
Carbohydrates, insulin, and obesity
Speakman, J. R., & Hall, K. D. (2021) · Science · doi:10.1126/science.aav0448 · Cited by 66
Mediation Analysis as a Means of Identifying Dietary Components That Differentially Affect the Fecal Microbiota of Infants Weaned by Modified Baby-Led and Traditional Approaches
Leong, C. S.-F., Haszard, J. J., Lawley, B., Otal, A., Taylor, R. W., Szymlek‐Gay, E. A., Fleming, E., Daniels, L., Fangupo, L. J., Tannock, G. W., et al. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.00914-18 · Cited by 64
Gastrointestinal biotransformation of phytochemicals: Towards futuristic dietary therapeutics and functional foods
Singh, B., Mal, G., Sharma, D., Sharma, R., Antony, C. P., & Kalra, R. S. (2020) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2020.09.022 · Cited by 64
An analysis of methods used to synthesize evidence and grade recommendations in food-based dietary guidelines
Blake, P., Durão, S., Naude, C. E., & Bero, L. A. (2018) · Nutrition Reviews · doi:10.1093/nutrit/nux074 · Cited by 63
The Potential Roles of Very Low Calorie, Very Low Calorie Ketogenic Diets and Very Low Carbohydrate Diets on the Gut Microbiota Composition
Rondanelli, M., Gasparri, C., Peroni, G., Faliva, M. A., Naso, M., Perna, S., Bazire, P., Sajoux, I., Maugeri, R., & Rigon, C. (2021) · Frontiers in Endocrinology · doi:10.3389/fendo.2021.662591 · Cited by 62
Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome
Klurfeld, D. M., Davis, C. D., Karp, R. W., Allen-Vercoe, E., Chang, E. B., Chassaing, B., Fahey, G. C., Hamaker, B. R., Holscher, H. D., Lampe, J. W., et al. (2018) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.00058.2018 · Cited by 61
Conducting research on diet–microbiome interactions: A review of current challenges, essential methodological principles, and recommendations for best practice in study design
Shanahan, E. R., McMaster, J. J., & Staudacher, H. M. (2021) · Journal of Human Nutrition and Dietetics · doi:10.1111/jhn.12868 · Cited by 61
Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes
Guthrie, L., Spencer, S. P., Perelman, D., Treuren, W. V., Han, S., Yu, F. B., Sonnenburg, E. D., Fischbach, M. A., Meyer, T. W., & Sonnenburg, J. L. (2022) · Cell Host & Microbe · doi:10.1016/j.chom.2022.05.003 · Cited by 61
Molecular Signatures of N-nitroso Compounds in Caco-2 Cells: Implications for Colon Carcinogenesis
Hebels, D. G. A. J., Jennen, D. G. J., Kleinjans, J. C. S., & de Kok, T. M. C. M. (2009) · Toxicological Sciences · doi:10.1093/toxsci/kfp035 · Cited by 56
Higher Trimethylamine- N -Oxide Plasma Levels with Increasing Age Are Mediated by Diet and Trimethylamine-Forming Bacteria
Rath, S., Rox, K., Bardenhorst, S. K., Schminke, U., Dörr, M., Mayerle, J. V., Frost, F., Lerch, M. M., Karch, A., Brönstrup, M., et al. (2021) · mSystems · doi:10.1128/msystems.00945-21 · Cited by 55
Dietary Patterns Affect the Gut Microbiome—The Link to Risk of Cardiometabolic Diseases
Tindall, A. M., Petersen, K. H., & Kris‐Etherton, P. M. (2018) · Journal of Nutrition · doi:10.1093/jn/nxy141 · Cited by 53
Animal, Plant, Collagen and Blended Dietary Proteins: Effects on Musculoskeletal Outcomes
Deane, C. S., Bass, J. J., Crossland, H., Phillips, B. E., & Atherton, P. J. (2020) · Nutrients · doi:10.3390/nu12092670 · Cited by 48
REVIEW: Cereal Carbohydrates and Colon Health
Zhang, G., & Hamaker, B. R. (2010) · Cereal Chemistry · doi:10.1094/cchem-87-4-0331 · Cited by 47
Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss
Hjorth, M. F., Christensen, L. H., Larsen, T. M., Roager, H. M., Krych, Ł., Kot, W., Nielsen, D. S., Ritz, C., & Astrup, A. V. (2020) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqaa007 · Cited by 47
Bifidobacterium longum subsp. infantis EVC001 Administration Is Associated with a Significant Reduction in the Incidence of Necrotizing Enterocolitis in Very Low Birth Weight Infants
Tobias, J. D., Olyaei, A. F., Laraway, B. J., Jordan, B. K., Dickinson, S., Golzarri‐Arroyo, L., Fialkowski, E., Owora, A. H., & Scottoline, B. P. (2022) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2021.12.070 · Cited by 46
Amish (Rural) vs. non-Amish (Urban) Infant Fecal Microbiotas Are Highly Diverse and Their Transplantation Lead to Differences in Mucosal Immune Maturation in a Humanized Germfree Piglet Model
Dhakal, S., Wang, L., Antony, L., Rank, J., Bernardo, P., Ghimire, S., Bondra, K., Siems, C., Lakshmanappa, Y. S., Renu, S., et al. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.01509 · Cited by 40
Challenges of human nutrition research
Hall, K. (2020) · Science · doi:10.1126/science.aba3807 · Cited by 37
Exposure to high fructose corn syrup during adolescence in the mouse alters hepatic metabolism and the microbiome in a sex‐specific manner
Bhat, S., Pinney, S. E., Kennedy, K. M., McCourt, C. R., Mundy, M. A., Surette, M. G., Sloboda, D. M., & Simmons, R. A. (2021) · The Journal of Physiology · doi:10.1113/jp280034 · Cited by 35
Dietary phosphatidylcholine supplementation reduces atherosclerosis in Ldlr male mice2
Aldana-Hernández, P., Azarcoya‐Barrera, J., van der Veen, J. N., Leonard, K., Zhao, Y.-Y., Nelson, R., Goruk, S., Field, C. J., Curtis, J. M., Richard, C., et al. (2021) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2021.108617 · Cited by 33
Self-citation
Perspective: Challenges and Controversial Issues in the Dietary Guidelines for Americans, 1980–2015
Nestle, M. (2018) · Advances in Nutrition · doi:10.1093/advances/nmx022 · Cited by 32
Nature of the evidence base and frameworks underpinning dietary recommendations for prevention of non-communicable diseases: a position paper from the Academy of Nutrition Sciences
Williams, C. M., Ashwell, M., Prentice, A., Hickson, M., & Stanner, S. A. (2020) · British Journal Of Nutrition · doi:10.1017/s0007114520005000 · Cited by 31
Data integration for prediction of weight loss in randomized controlled dietary trials
Nielsen, R. L., Helenius, M., García, S. L., Roager, H. M., Aytan-Aktug, D., Hansen, L. B. S., Lind, M. V., Vogt, J. K., Dalgaard, M., Bahl, M. I., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-76097-z · Cited by 25
Personal diet–microbiota interactions and weight loss
Roager, H. M., & Christensen, L. H. (2022) · Proceedings of The Nutrition Society · doi:10.1017/s0029665122000805 · Cited by 23
The hybrid science of diet, microbes, and metabolic health
Shanahan, F., & Murphy, E. (2011) · American Journal of Clinical Nutrition · doi:10.3945/ajcn.111.018473 · Cited by 18
Harnessing SmartPhones to Personalize Nutrition in a Time of Global Pandemic
Zmora, N., & Elinav, E. (2021) · Nutrients · doi:10.3390/nu13020422 · Cited by 16
Estimating the potential public health impact of fibre enrichment: a UK modelling study
Canene‐Adams, K., Laurie, I., Karnik, K., Flynn, B., Goodwin, W., & Pigat, S. (2022) · British Journal Of Nutrition · doi:10.1017/s0007114521004827 · Cited by 14
Ultra-Processed Foods, Diet Quality and Human Health
Dinu, M., & Martini, D. (2023) · MDPI eBooks · doi:10.3390/books978-3-0365-8465-2 · Cited by 7

Research works printed but not linked: 1

Neuhouser, 2020, Red and processed meat: more with less? Am, J. Clin. Nutr., 111, 252

Sorted by citations

The interplay between diet and the gut microbiome: implications for health and disease
Ross, F. C., Patangia, D. V., Grimaud, G. M., Lavelle, A., Dempsey, E. M., Ross, R. P., & Stanton, C. (2024) · Nature Reviews Microbiology · doi:10.1038/s41579-024-01068-4 · Cited by 739
Conversion of (poly)phenolic compounds in food fermentations by lactic acid bacteria: Novel insights into metabolic pathways and functional metabolites
Gaur, G., & Gänzle, M. G. (2023) · Current Research in Food Science · doi:10.1016/j.crfs.2023.100448 · Cited by 267
Microbiome-based interventions to modulate gut ecology and the immune system
Hitch, T. C. A., Hall, L. J., Walsh, S. K., Leventhal, G. E., Slack, E. M. C., de Wouters, T., Walter, J., & Clavel, T. (2022) · Mucosal Immunology · doi:10.1038/s41385-022-00564-1 · Cited by 263
Self-citation
Gut microbiota bridges dietary nutrients and host immunity
Fan, L., Xia, Y., Wang, Y., Han, D., Liu, Y., Li, J., Fu, J., Wang, L., Gan, Z., Liu, B., et al. (2023) · Science China Life Sciences · doi:10.1007/s11427-023-2346-1 · Cited by 201
Examining the healthy human microbiome concept
Joos, R., Boucher, K., Lavelle, A., Arumugam, M., Blaser, M. J., Claesson, M. J., Clarke, G. A., Cotter, P. D., Sordi, L. D., Domínguez-Bello, M. G., et al. (2024) · Nature Reviews Microbiology · doi:10.1038/s41579-024-01107-0 · Cited by 184
Self-citation

See all 252

Authors: Armet, A. M., Deehan, E. C., O’Sullivan, A. F., Mota, J. F., Field, C. J., Prado, C. M., Lucey, A. J., & Walter, J.
Affiliations: University of Alberta (CA)
University College Cork (IE)
Corresponding author: Walter, Jens
ORCID: Armet, Anissa M.
Deehan, Edward C.
Mota, João F.
Field, Catherine J.
Prado, Carla M.
Lucey, Alice J.
Walter, Jens
Venue: Cell Host & Microbe
Publisher: Elsevier BV
Published: 2022-06
Volume: 30
Issue: 6
Pages: 764-785
ISSN: 1931-3128 (ISSN-L)
DOI: 10.1016/j.chom.2022.04.016
OpenAlex: W4282936738
Semantic Scholar: fbfaf88746d204711515477f4b1c26eef07a8089
Cited by: 252
References: 193
Citations by year: 2026: 41 · 2025: 80 · 2024: 68 · 2023: 49 · 2022: 14
FWCI: 5.50
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
www.elsevier.com/legal/tdmrep-license (tdm)
www.elsevier.com/open-access/userlicense/1.0/ (vor, 372 d)
doi.org/10.15223/policy-017 (stm-asf)
doi.org/10.15223/policy-037 (stm-asf)
doi.org/10.15223/policy-012 (stm-asf)
doi.org/10.15223/policy-029 (stm-asf)
doi.org/10.15223/policy-004 (stm-asf)
Locations: Cell Host & Microbe (publishedVersion)
PubMed (publishedVersion)
Funders: Pfizer
Fresenius Kabi
Canadian Institutes of Health Research (PJT-152994)
Science Foundation Ireland (19/RP/6853, APC/SFI/12/RC/2273_P2)
Alberta Innovates
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Nutritional Studies and Diet
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Nutrition, Genetics, and Disease
Keywords: gut microbiota, healthy eating, dietary guidelines, host-microbe interactions, diet-related chronic diseases, dietary recommendations, diet and microbiome
MeSH terms: Gastrointestinal Microbiome, Diet, Healthy, Diet, Humans, Nutritional Status

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Rethinking healthy eating in light of the gut microbiome

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks