Linking dietary patterns with gut microbial composition and function

Sheflin, Amy M.; Melby, Christopher L.; Carbonero, Franck; Weir, Tiffany L.

doi:10.1080/19490976.2016.1270809

Cited by 162Gut microbiota and healthNutritional Studies and DietNutrition, Genetics, and Disease

Linking dietary patterns with gut microbial composition and function

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Sheflin, Amy M., Melby, Christopher L., Carbonero, Franck, Weir, Tiffany L.·2017·Gut Microbes

DOI 10.1080/19490976.2016.1270809PMC PMC5390824

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Abstract

Emerging insights have implicated the gut microbiota as an important factor in the maintenance of human health. Although nutrition research has focused on how direct interactions between dietary components and host systems influence human health, it is becoming increasingly important to consider nutrient effects on the gut microbiome for a more complete picture. Understanding nutrient-host-microbiome interactions promises to reveal novel mechanisms of disease etiology and progression, offers new disease prevention strategies and therapeutic possibilities, and may mandate alternative criteria to evaluate the safety of food ingredients. Here we review the current literature on diet effects on the microbiome and the generation of microbial metabolites of dietary constituents that may influence human health. We conclude with a discussion of the relevance of these studies to nutrition and public health and summarize further research needs required to realize the potential of exploiting diet-microbiota interactions for improved health.

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Protein intake appears to be a strong modulator of the microbiota.
“Protein intake appears to be a strong modulator of the microbiota [20, 32, 34]”
From International Society of Sports Nutrition Position Stand: Probiotics (2019) · cites this paper as [34]
Dietary protein (and fat) consumption elicits both compositional and functional changes to the gut microbiota.
“there is evidence to support the assertion that dietary protein (and fat) consumption elicit both compositional and functional changes to the gut microbiota [171].”
From The athletic gut microbiota (2020) · cites this paper as [171]
Dietary fiber passes undigested from the small intestine into the colonic environment, and the gut microbiota relies on these fibers for energy, targeting them for disassembly with a combined toolkit of thousands of enzymes.
“Dietary fiber passes undigested from the small intestine into the colonic environment [171] and the gut microbiota relies on these fibers for energy, which they target for disassembly with a combined ‘toolkit’ of thousands of enzymes [204].”
From The athletic gut microbiota (2020) · cites this paper as [171]
High-fat diets could interact with the gut microbiota to facilitate translocation of bacterial LPS generating chronic inflammation.
“Diets high in fat could interact in various ways with the gut microbiota to facilitate the translocation of bacterial LPS generating chronic inflammation [171].”
From The athletic gut microbiota (2020) · cites this paper as [171]

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Isolation of human colonic fibrolytic bacteria
Montgomery, L. (1988) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.1988.tb01214.x · Cited by 17 · see citing works

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The effects of vegetarian and vegan diets on gut microbiota
Tomova, A., Bukovsky, I., Rembert, E., Yonas, W., Alwarith, J., Barnard, N. D., & Kahleova, H. (2019) · Frontiers in Nutrition · doi:10.3389/fnut.2019.00047 · Cited by 713 · see citing works
The influence of the microbiome on respiratory health
Wypych, T. P., Wickramasinghe, L. C., & Marsland, B. J. (2019) · Nature Immunology · doi:10.1038/s41590-019-0451-9 · Cited by 611 · see citing works
The athletic gut microbiota
Mohr, A. E., Jäger, R., Carpenter, K. C., Kerksick, C. M., Purpura, M., Townsend, J. R., West, N. P., Black, K., Gleeson, M., Pyne, D. B., et al. (2020) · Journal of the International Society of Sports Nutrition · doi:10.1186/s12970-020-00353-w · Cited by 378 · see citing works
“gut microbiota to facilitate the translocation of bacterial LPS generating chronic inflammation [171].”
BackgroundInfluential
International Society of Sports Nutrition Position Stand: Probiotics
Jäger, R., Mohr, A. E., Carpenter, K. C., Kerksick, C. M., Purpura, M., Moussa, A., Townsend, J. R., Lamprecht, M., West, N. P., Black, K., et al. (2019) · Journal of the International Society of Sports Nutrition · doi:10.1186/s12970-019-0329-0 · Cited by 277 · see citing works
Gut Microbiota Metabolism and Interaction with Food Components
Vernocchi, P., CHIERICO, F. D., & Putignani, L. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21103688 · Cited by 236 · see citing works
Leveraging diet to engineer the gut microbiome
Wolter, M., Grant, E. T., Boudaud, M., Steimle, A., Pereira, G. V., Martens, E. C., & Desai, M. S. (2021) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-021-00512-7 · Cited by 211 · see citing works
Modulation of the human gut microbiota by phenolics and phenolic fiber‐rich foods
Loo, Y. T., Howell, K. S., Chan, M., Zhang, P., & Ng, K. (2020) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12563 · Cited by 216 · see citing works
The gut microbiota as a novel regulator of cardiovascular function and disease
Battson, M. L., Lee, D. M., Weir, T. L., & Gentile, C. L. (2017) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2017.12.010 · Cited by 185 · see citing works
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Diets intervene osteoporosis via gut-bone axis
Zhang, Y., Song, P., Wang, S., Liu, H., Shi, Z., & Su, J. (2024) · Gut Microbes · doi:10.1080/19490976.2023.2295432 · Cited by 180 · see citing works
Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome
Rodionov, D. A., Arzamasov, A. A., Khoroshkin, M., Iablokov, S. N., Leyn, S. A., Peterson, S. N., Novichkov, P. S., & Osterman, A. L. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01316 · Cited by 177 · see citing works
Gut Microbiota, Probiotics and Physical Performance in Athletes and Physically Active Individuals
Marttinen, M., Ala‐Jaakkola, R., Laitila, A., & Lehtinen, M. J. (2020) · Nutrients · doi:10.3390/nu12102936 · Cited by 176 · see citing works
Diet-Derived Antioxidants and Their Role in Inflammation, Obesity and Gut Microbiota Modulation
Deledda, A., Annunziata, G., Tenore, G. C., Palmas, V., Manzin, A., & Velluzzi, F. (2021) · Antioxidants · doi:10.3390/antiox10050708 · Cited by 153 · see citing works
The importance of nutritional factors and dietary management of Hashimoto’s thyroiditis
Ihnatowicz, P., Drywień, M. E., Wątor, P., & Wojsiat, J. (2019) · Annals of Agricultural and Environmental Medicine · doi:10.26444/aaem/112331 · Cited by 129 · see citing works
Polyphenols and Their Interactions With Other Dietary Compounds: Implications for Human Health
Kardum, N., & Glibetić, M. (2018) · Advances in food and nutrition research · doi:10.1016/bs.afnr.2017.12.001 · Cited by 124 · see citing works
The association between the maternal diet and the maternal and infant gut microbiome: a systematic review
Maher, S. E., O’Brien, E. C., Moore, R., Byrne, D. F., Geraghty, A. A., Saldova, R., Murphy, E. F., van Sinderen, D., Cotter, P. D., & McAuliffe, F. M. (2020) · British Journal Of Nutrition · doi:10.1017/s0007114520000847 · Cited by 111 · see citing works
The Impact of Low-FODMAPs, Gluten-Free, and Ketogenic Diets on Gut Microbiota Modulation in Pathological Conditions
Reddel, S., Putignani, L., & Del Chierico, F. (2019) · Nutrients · doi:10.3390/nu11020373 · Cited by 104 · see citing works
Natural diets promote retention of the native gut microbiota in captive rodents
Martínez‐Mota, R., Kohl, K. D., Orr, T. J., & Dearing, M. D. (2019) · The ISME Journal · doi:10.1038/s41396-019-0497-6 · Cited by 92 · see citing works
Does Dietary Fiber Affect the Levels of Nutritional Components after Feed Formulation?
Adams, S., Sello, C. T., Qin, G., Che, D., & Han, R. (2018) · Fibers · doi:10.3390/fib6020029 · Cited by 86 · see citing works
Vitamin E (α-tocopherol) consumption influences gut microbiota composition
Choi, Y., Lee, S., Kim, S., Lee, J., Ha, J., Oh, H., Lee, Y., Kim, Y., & Yoon, Y. (2019) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2019.1639637 · Cited by 85 · see citing works
Introduction to the special focus issue on the impact of diet on gut microbiota composition and function and future opportunities for nutritional modulation of the gut microbiome to improve human health
Donovan, S. M. (2017) · Gut Microbes · doi:10.1080/19490976.2017.1299309 · Cited by 85 · see citing works
Gastrointestinal microbiome and gluten in celiac disease
Wu, X., Lin, Q., Liu, K., Wu, J., & Shan, Z.-W. (2021) · Annals of Medicine · doi:10.1080/07853890.2021.1990392 · Cited by 80 · see citing works
Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota
Tanca, A., Abbondio, M., Palomba, A., Fraumene, C., Marongiu, F., Serra, M., Pagnozzi, D., Laconi, E., & Uzzau, S. (2018) · Scientific Reports · doi:10.1038/s41598-018-33100-y · Cited by 79 · see citing works
Microbial Ecology of Fermented Vegetables and Non-Alcoholic Drinks and Current Knowledge on Their Impact on Human Health
Lavefve, L., Marasini, D., & Carbonero, F. G. (2018) · Advances in food and nutrition research · doi:10.1016/bs.afnr.2018.09.001 · Cited by 82 · see citing works
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High-Fat Diet Alters the Intestinal Microbiota in Streptozotocin-Induced Type 2 Diabetic Mice
Liu, S., Qin, P., & Wang, J. (2019) · Microorganisms · doi:10.3390/microorganisms7060176 · Cited by 77 · see citing works
Impact of Grain Sorghum Polyphenols on Microbiota of Normal Weight and Overweight/Obese Subjects during In Vitro Fecal Fermentation
Ashley, D., Marasini, D., Brownmiller, C., Lee, J. A., Carbonero, F. G., & Lee, S. (2019) · Nutrients · doi:10.3390/nu11020217 · Cited by 71 · see citing works
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The role of the brain–gut–microbiota axis in psychology: The importance of considering gut microbiota in the development, perpetuation, and treatment of psychological disorders
Ganci, M., Suleyman, E., Butt, H., & Ball, M. (2019) · Brain and Behavior · doi:10.1002/brb3.1408 · Cited by 71 · see citing works
Dietary Polyphenols Targeting Arterial Stiffness: Interplay of Contributing Mechanisms and Gut Microbiome-Related Metabolism
Bruyne, T. D., Steenput, B., Roth, L., Meyer, G. R. Y. D., dos Santos, C. N., Valentová, K., Dambrova, M., & Hermans, N. (2019) · Nutrients · doi:10.3390/nu11030578 · Cited by 68 · see citing works
Sensitivity to oxazolone induced dermatitis is transferable with gut microbiota in mice
Zachariassen, L. F., Krych, Ł., Engkilde, K., Nielsen, D. S., Kot, W., Hansen, C. H. F., & Hansen, A. K. (2017) · Scientific Reports · doi:10.1038/srep44385 · Cited by 66 · see citing works
Effect of dark sweet cherry powder consumption on the gut microbiota, short-chain fatty acids, and biomarkers of gut health in obese db/db mice
García-Mazcorro, J. F., Lage, N. N., Mertens‐Talcott, S. U., Talcott, S. T., Chew, B. P., Dowd, S. E., Kawas, J. R., & Noratto, G. D. (2018) · PeerJ · doi:10.7717/peerj.4195 · Cited by 66 · see citing works
Meat lipids, NaCl and carnitine: Do they unveil the conundrum of the association between red and processed meat intake and cardiovascular diseases?_Invited Review
Delgado, J., Ansorena, D., HECKE, T. V., Astiasarán, I., SMET, S. D., & Estévez, M. (2020) · Meat Science · doi:10.1016/j.meatsci.2020.108278 · Cited by 65 · see citing works
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
Beck, K. L., Haiminen, N., Chambliss, D. D., Edlund, S. B., Kunitomi, M., Huang, B. C., Kong, N. T., Ganesan, B., Baker, R. C., Markwell, P. J., et al. (2021) · npj Science of Food · doi:10.1038/s41538-020-00083-y · Cited by 56 · see citing works
Nutrition and Gastrointestinal Microbiota, Microbial-Derived Secondary Bile Acids, and Cardiovascular Disease
Rodríguez-Morató, J., & Matthan, N. R. (2020) · Current Atherosclerosis Reports · doi:10.1007/s11883-020-00863-7 · Cited by 53 · see citing works
Nanomaterial–microbe cross-talk: physicochemical principles and (patho)biological consequences
Westmeier, D., Hahlbrock, A., Reinhardt, C., Fröhlich‐Nowoisky, J., Weßler, S., Vallet, C., Pöschl, U., Knauer, S. K., & Stauber, R. H. (2018) · Chemical Society Reviews · doi:10.1039/c6cs00691d · Cited by 52 · see citing works
Functional and Therapeutic Roles of Plant-Derived Antioxidants in Type 2 Diabetes Mellitus: Mechanisms, Challenges, and Considerations for Special Populations
Clemente‐Suárez, V. J., Martín-Rodríguez, A., Beltrán-Velasco, A. I., Rubio-Zarapuz, A., Martínez‐Guardado, I., Valcárcel‐Martín, R., & Tornero-Aguilera, J. F. (2025) · Antioxidants · doi:10.3390/antiox14060725 · Cited by 64 · see citing works
Fiber Supplements Derived From Sugarcane Stem, Wheat Dextrin and Psyllium Husk Have Different In Vitro Effects on the Human Gut Microbiota
Gamage, H. K. A. H., Tetu, S. G., Chong, R. W. W., Bucio-Noble, D., Rosewarne, C. P., Kautto, L., Ball, M. S., Molloy, M. P., Packer, N. H., & Paulsen, I. T. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01618 · Cited by 49 · see citing works
From the Table to the Tumor: The Role of Mediterranean and Western Dietary Patterns in Shifting Microbial-Mediated Signaling to Impact Breast Cancer Risk
Newman, T. M., Vitolins, M. Z., & Cook, K. L. (2019) · Nutrients · doi:10.3390/nu11112565 · Cited by 49 · see citing works
Tart Cherries and health: Current knowledge and need for a better understanding of the fate of phytochemicals in the human gastrointestinal tract
Mayta-Apaza Alba, C., Marasini, D., & Carbonero, F. G. (2017) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2017.1384918 · Cited by 49 · see citing works
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Impact of vegan diets on gut microbiota: An update on the clinical implications
Chen, C., Wong, M., Yi, C., Liu, T., Lei, W.-Y., Hung, J., Lin, C., & Lin, S.-Z. (2018) · Tzu Chi Medical Journal · doi:10.4103/tcmj.tcmj_21_18 · Cited by 47 · see citing works
Green tea catechins and their metabolites in human skin before and after exposure to ultraviolet radiation
Clarke, K. A., Dew, T. P., Watson, R. E. B., Farrar, M. D., Osman, J. E., Nicolaou, A., Rhodes, L. E., & Williamson, G. (2015) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2015.09.001 · Cited by 45 · see citing works
Gut Microbiome and Common Variable Immunodeficiency: Few Certainties and Many Outstanding Questions
Varricchi, G., Poto, R., Ianiro, G., Punziano, A., Marone, G., Gasbarrini, A., & Spadaro, G. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.712915 · Cited by 44 · see citing works
Characterization of the urinary microbiota of elderly women and the effects of type 2 diabetes and urinary tract infections on the microbiota
Liu, F., Ling, Z., Xiao, Y., Yang, Q., Li, Z., Jiang, P., Li, L., & Wang, W. (2017) · Oncotarget · doi:10.18632/oncotarget.21126 · Cited by 42 · see citing works
Recent advances on cyanidin-3-O-glucoside in preventing obesity-related metabolic disorders: A comprehensive review
Zad, O. D., Al‐Dalali, S., Zhao, L., Zhao, L. Q., & Wang, C. (2024) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2024.150344 · Cited by 39 · see citing works
Complementary and Alternative Medicine Strategies for Therapeutic Gut Microbiota Modulation in Inflammatory Bowel Disease and their Next-Generation Approaches
Basson, A. R., Lam, M. C., & Cominelli, F. (2017) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2017.08.002 · Cited by 37 · see citing works
The Influence of Diet Interventions Using Whole, Plant Food on the Gut Microbiome: A Narrative Review
Willis, H. J., & Slavin, J. L. (2019) · Journal of the Academy of Nutrition and Dietetics · doi:10.1016/j.jand.2019.09.017 · Cited by 38 · see citing works
Effects of Vegetable Proteins on Hypercholesterolemia and Gut Microbiota Modulation
Busnelli, M., Manzini, S., Sirtori, C. R., Chiesa, G., & Parolini, C. (2018) · Nutrients · doi:10.3390/nu10091249 · Cited by 37 · see citing works
Unrevealing variation of microbial communities and correlation with environmental variables in a full culture-cycle of Undaria pinnatifida
Zhao, Z., Pan, Y., Jiang, J., Gao, S., Sun, H., Dong, Y., Sun, P., Guan, X., & Zhou, Z. (2018) · Marine Environmental Research · doi:10.1016/j.marenvres.2018.05.012 · Cited by 36 · see citing works
Moringa oleifera Lam. Peptide Remodels Intestinal Mucosal Barrier by Inhibiting JAK-STAT Activation and Modulating Gut Microbiota in Colitis
Hong, Z.-S., Xie, J., Wang, X., Dai, J., Mao, J.-Y., Bai, Y., Sheng, J., & Tian, Y. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.924178 · Cited by 34 · see citing works
Harnessing the Power of Microbiome Assessment Tools as Part of Neuroprotective Nutrition and Lifestyle Medicine Interventions
Toribio-Mateas, M. A. (2018) · Microorganisms · doi:10.3390/microorganisms6020035 · Cited by 35 · see citing works
Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model
Jollet, M., Nay, K., Chopard, A., Bareille, M., Beck, A., Ollendorff, V., Vernus, B., Bonnieu, A., Mariadassou, M., Rué, O., et al. (2021) · Nutrients · doi:10.3390/nu13113865 · Cited by 33 · see citing works
Inflammatory Bowel Diseases: Host-Microbial-Environmental Interactions in Dysbiosis
Colquhoun, C. M., Duncan, M., & Grant, G. (2020) · Diseases · doi:10.3390/diseases8020013 · Cited by 31 · see citing works
Modulation of Gut-Brain Axis by Probiotics: A Promising Anti-depressant Approach
Rajanala, K., Kumar, N., & Chamallamudi, M. R. (2021) · Current Neuropharmacology · doi:10.2174/1570159x19666201215142520 · Cited by 32 · see citing works
Pulse Crop Effects on Gut Microbial Populations, Intestinal Function, and Adiposity in a Mouse Model of Diet-Induced Obesity
McGinley, J. N., Fitzgerald, V. K., Neil, E. S., Omerigic, H., Heuberger, A. L., Weir, T. L., McGee, R. J., Vandemark, G. J., & Thompson, H. J. (2020) · Nutrients · doi:10.3390/nu12030593 · Cited by 30 · see citing works
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A Health-Conscious Food Pattern Is Associated with Prediabetes and Gut Microbiota in the Malmö Offspring Study
Ericson, U., Brunkwall, L., Hellstrand, S., Nilsson, P. M., & Orho‐Melander, M. (2019) · Journal of Nutrition · doi:10.1093/jn/nxz293 · Cited by 29 · see citing works
Nutritional Metabolomics: Postprandial Response of Meals Relating to Vegan, Lacto-Ovo Vegetarian, and Omnivore Diets
Rådjursöga, M., Lindqvist, H. M., Pedersen, A., Karlsson, G., Malmodin, D., Ellegård, L., & Winkvist, A. (2018) · Nutrients · doi:10.3390/nu10081063 · Cited by 29 · see citing works
Characteristics of the Urinary Microbiome From Patients With Gout: A Prospective Study
Ning, Y., Yang, G., Chen, Y., Zhao, X. Q., Qian, H., Liu, Y., Chen, S., & Shi, G. (2020) · Frontiers in Endocrinology · doi:10.3389/fendo.2020.00272 · Cited by 27 · see citing works
The Nutrition-Microbiota-Physical Activity Triad: An Inspiring New Concept for Health and Sports Performance
Boisseau, N., Barnich, N., & Koechlin‐Ramonatxo, C. (2022) · Nutrients · doi:10.3390/nu14050924 · Cited by 29 · see citing works
Review article: the impact of diet on ileoanal pouch function and on the pathogenesis of pouchitis
Ardalan, Z. S., Yao, C. K., Sparrow, M., & Gibson, P. R. (2020) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.16085 · Cited by 25 · see citing works
Long-term dietary intake from infancy to late adolescence is associated with gut microbiota composition in young adulthood
Oluwagbemigun, K., O’Donovan, A. N., Berding, K., Lyons, K., Alexy, U., Schmid, M. C., Clarke, G. A., Stanton, C., Cryan, J. F., & Nöthlings, U. (2020) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/nqaa340 · Cited by 25 · see citing works
A comparative analysis of gut microbiota disturbances in the Gottingen minipig and rhesus macaque models of acute radiation syndrome following bioequivalent radiation exposures
Carbonero, F. G., Mayta-Apaza, A. C., Yu, J.-Z., Lindeblad, M., Lyubimov, A., Neri, F., Szilagyi, E., & Bartholomew, A. M. (2018) · Radiation and Environmental Biophysics · doi:10.1007/s00411-018-0759-0 · Cited by 24 · see citing works
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Dietary Fiber Influences Bacterial Community Assembly Processes in the Gut Microbiota of Durco × Bamei Crossbred Pig
Tang, X., Zhang, L., Fan, C., Wang, L., Fu, H., Ren, S., Shen, W., Jia, S., Wu, G., & Zhang, Y. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.688554 · Cited by 24 · see citing works
Dietary-protein sources modulate host susceptibility to Clostridioides difficile infection through the gut microbiota
Yakabe, K., Higashi, S., Akiyama, M., Mori, H., Murakami, T., Toyoda, A., Sugiyama, Y., Kishino, S., Okano, K., Hirayama, A., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111332 · Cited by 24 · see citing works
Exploring the Plasticity of Diet on Gut Microbiota and Its Correlation with Gut Health
Yao, S., Zhao, Y., Chen, H., Sun, R., Chen, L., Huang, J., Yu, Z., & Chen, S. (2023) · Nutrients · doi:10.3390/nu15153460 · Cited by 24 · see citing works
Integrative and quantitative bioenergetics: Design of a study to assess the impact of the gut microbiome on host energy balance
Corbin, K. D., Krajmalnik‐Brown, R., Carnero, E. Á., Bock, C., Emerson, R., Rittmann, B. E., Marcus, A. K., Davis, T. L., Dirks, B., Ilhan, Z. E., et al. (2020) · Contemporary Clinical Trials Communications · doi:10.1016/j.conctc.2020.100646 · Cited by 21 · see citing works
Optimizing the Gut Microbiota for Individualized Performance Development in Elite Athletes
Nolte, S., Krüger, K., Lenz, C., & Zentgraf, K. (2023) · Biology · doi:10.3390/biology12121491 · Cited by 24 · see citing works
Dietary Habits and Their Influence on the Microbiome and Mental Health in Adolescents
Sălcudean, A., Cîmpian, D. M., Popovici, R. A., Forna, N. C., Corodan-Comiati, D.-M., Sasu, A.-B., Cozma, M.-M., Bodo, C.-R., Enache, E.-C., Păcurar, M., et al. (2025) · Nutrients · doi:10.3390/nu17091496 · Cited by 23 · see citing works
High fat diet–induced hyperlipidemia and tissue steatosis in rabbits through modulating ileal microbiota
Guo, Z., Ali, Q., Abaidullah, M., Gao, Z., Diao, X., Liu, B., Wang, Z., Zhu, X., Cui, Y., Li, D., et al. (2022) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-022-12203-7 · Cited by 22 · see citing works
Production of Toxins by the Gut Microbiota: The Role of Dietary Protein
Alvarenga, L., Kemp, J. A., Baptista, B. G., Ribeiro, M. M., Lima, L. S., & Mafra, D. (2024) · Current Nutrition Reports · doi:10.1007/s13668-024-00535-x · Cited by 21 · see citing works
Microbiota-Derived Natural Products Targeting Cancer Stem Cells: Inside the Gut Pharma Factory
Artusa, V., Calabrone, L., Mortara, L., Peri, F., & Bruno, A. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24054997 · Cited by 20 · see citing works
Microbiota profiles and dynamics in fermented plant‐based products and preliminary assessment of their in vitro gut microbiota modulation
Lavefve, L., Cureau, N., Rodhouse, L., Marasini, D., Walker, L. M., Ashley, D., Lee, S., Gadonna‐Widehem, P., Anton, P. M., & Carbonero, F. G. (2021) · Food Frontiers · doi:10.1002/fft2.75 · Cited by 20 · see citing works
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Effects of Adding Lean Red Meat to a U.S.-Style Healthy Vegetarian Dietary Pattern on Gut Microbiota and Cardiovascular Risk Factors in Young Adults: a Crossover Randomized Controlled Trial
Wang, Y. H. D., Lindemann, S. R., Cross, T.-W., Tang, M., Clark, C. M., & Campbell, W. W. (2023) · Journal of Nutrition · doi:10.1016/j.tjnut.2023.03.013 · Cited by 20 · see citing works
Crosstalk between the Gut and Brain in Ischemic Stroke: Mechanistic Insights and Therapeutic Options
Huang, W., Zhu, L., Song, W., Zhang, M., Teng, L., & Wu, M. (2022) · Mediators of Inflammation · doi:10.1155/2022/6508046 · Cited by 18 · see citing works
Greater alteration of gut microbiota occurs in childhood obesity than in adulthood obesity
Yu, Z., Yu, X.-F., Zhao, X., Su, Z., & Ren, P. (2023) · Frontiers in Pediatrics · doi:10.3389/fped.2023.1087401 · Cited by 17 · see citing works
Metaproteomic analysis of human gut microbiome in digestive and metabolic diseases
Pan, S., & Chen, R. (2020) · Advances in clinical chemistry · doi:10.1016/bs.acc.2019.12.002 · Cited by 17 · see citing works
Gut microbiota-metabolite interactions meditate the effect of dietary patterns on precocious puberty
Wang, Y., Jin, C., Li, H., Liang, X., Zhao, C., Wu, N., Yue, M., Zhao, L., Han, Y., Wang, Q., et al. (2024) · iScience · doi:10.1016/j.isci.2024.109887 · Cited by 16 · see citing works
Understanding the Heterogeneity of Obesity and the Relationship to the Brain-Gut Axis
Hung, T., Dong, T. S., Chen, Z., Elashoff, D. A., Sinsheimer, J. S., Jacobs, J. P., Lagishetty, V., Vora, P. P., Stains, J., Mayer, E. A., et al. (2020) · Nutrients · doi:10.3390/nu12123701 · Cited by 17 · see citing works
Age-Related Intestinal Dysbiosis and Enrichment of Gut-specific Bacteria in the Lung Are Associated With Increased Susceptibility to Streptococcus pneumoniae Infection in Mice
McMahan, R. H., Hulsebus, H. J., Najarro, K. M., Giesy, L. E., Frank, D. N., Orlicky, D. J., & Kovacs, E. J. (2022) · Frontiers in Aging · doi:10.3389/fragi.2022.859991 · Cited by 15 · see citing works
Preliminary Investigation of Microbiome and Dietary Differences in Patients with Phenylketonuria on Enzyme Substitution Therapy Compared to Traditional Therapies
McWhorter, N. Y., Dhillon, J., & Hoffman, J. B. (2021) · Journal of the Academy of Nutrition and Dietetics · doi:10.1016/j.jand.2021.12.011 · Cited by 14 · see citing works
A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary β-glucans
Mandelli, F., Martins, M. P., Chinaglia, M., de Lima, E. A., Morais, M. A. B., Lima, T. B., Cabral, L., Pirolla, R. A. S., Fuzita, F. J., Paixão, D. A. A., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00578-6 · Cited by 13 · see citing works
Human Digestive Physiology and Evolutionary Diet: A Metabolomic Perspective on Carnivorous and Scavenger Adaptations
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Authors: Sheflin, A. M., Melby, C. L., Carbonero, F., & Weir, T. L.
Affiliations: Colorado State University (US)
University of Arkansas at Fayetteville (US)
Corresponding author: Weir, Tiffany L.
ORCID: Sheflin, Amy M.
Melby, Christopher L.
Carbonero, Franck
Weir, Tiffany L.
Venue: Gut Microbes
Publisher: Informa UK Limited
Published: 2016-12-14
Volume: 8
Issue: 2
Pages: 113-129
ISSN: 1949-0976 (ISSN-L)
1949-0984
DOI: 10.1080/19490976.2016.1270809
PMC: PMC5390824
OpenAlex: W2561384804
Cited by: 162
References: 147
Citations by year: 2026: 15 · 2025: 15 · 2024: 17 · 2023: 12 · 2022: 14 · 2021: 22 · 2020: 17 · 2019: 20 · 2018: 19 · 2017: 10 · 2015: 1
FWCI: 1.46
Type: journal article
Language: en
Open access: gold
doi.org
Locations: Gut Microbes (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Nutritional Studies and Diet
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Nutrition, Genetics, and Disease
Keywords: dietary habits, gut microbiota, diet-microbiome interactions, human health, disease prevention, food ingredient safety
MeSH terms: Gastrointestinal Microbiome, Animals, Diet, Feeding Behavior, Food Analysis, Humans, Gastrointestinal Tract

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Linking dietary patterns with gut microbial composition and function

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