Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 282

The DOI matches its Crossref record; 114 of the 114 references it cites were found in a registry or an index.

The current understanding of KRAS protein structure and dynamics

Open access
Pantsar, Tatu·2020·Computational and Structural Biotechnology Journal

Abstract

One of the most common drivers in human cancer is the mutant KRAS protein. Not so long ago KRAS was considered as an undruggable oncoprotein. After a long struggle, however, we finally see some light at the end of the tunnel as promising KRAS targeted therapies are in or approaching clinical trials. In recent years, together with the promising progress in RAS drug discovery, our understanding of KRAS has increased tremendously. This progress has been accompanied with a resurgence of publicly available KRAS structures, which were limited to nine structures less than ten years ago. Furthermore, the ever-increasing computational capacity has made biologically relevant timescales accessible, enabling molecular dynamics (MD) simulations to study the dynamics of KRAS protein in more detail at the atomistic level. In this minireview, my aim is to provide the reader an overview of the publicly available KRAS structural data, insights to conformational dynamics revealed by experiments and what we have learned from MD simulations. Also, I will discuss limitations of the current data and provide suggestions for future research related to KRAS, which would fill out the existing gaps in our knowledge and provide guidance in deciphering this enigmatic oncoprotein.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1016/j.csbj.2019.12.004

Cites

114 of 114 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 114 references

Research works printed but not linked: 3

  1. Rapp C.S. and Pollack R.M.: Crystal packing effects on protein loops. Proteins 2005; 60: 103. · doi:10.1002/prot.20492
  2. Grossfield A., Patrone P.N., Roe D.R., Schultz A.J., Siderius D.W. and Zuckerman D.M.: Best practices for quantification of uncertainty and sampling quality in molecular simulations [Article v1.0]. Living J Comput Mol Sci 2018; 1.
  3. Vögele M., Köfinger J. and Hummer G.: Finite-size-corrected rotational diffusion coefficients of membrane proteins and carbon nanotubes from molecular dynamics simulations. J Phys Chem B 2019; 123: 5099. · doi:10.1021/acs.jpcb.9b01656

Cited by

See all 282

Metadata

Authors
Pantsar, T.
Venue
Computational and Structural Biotechnology Journal
Published
2020
Volume
18
Pages
189-198
ISSN
2001-0370 (ISSN-L)
OpenAlex
W2998581726
Cited by
282
References
114
FWCI
6.37
Type
journal article
Language
en
Open access
gold
Licence
Funders
Horizon 2020

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: The current understanding of KRAS protein structure and dynamics. https://app.cochat.ai/papers/10.1016/j.csbj.2019.12.004
The paper
Pantsar, T. (2020). The current understanding of KRAS protein structure and dynamics. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2019.12.004

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.