A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

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Gene Ontology: tool for the unification of biology

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Cluster analysis and display of genome-wide expression patterns

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

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Mutation of the mouse klotho gene leads to a syndrome resembling ageing

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Active Genes Are Tri-Methylated at K4 of Histone H3

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A translational profiling approach for the molecular characterization of CNS cell types

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Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

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Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

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Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

Bernatavichute, Y. V., Zhang, X., Cokus, S., Pellegrini, M., & Jacobsen, S. E. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003156 · Cited by 333

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

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Chromatin accessibility profiling by ATAC-seq

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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

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Epigenetic contribution to stress adaptation in plants

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Hairy Root Transformation Using Agrobacterium rhizogenes as a Tool for Exploring Cell Type-Specific Gene Expression and Function Using Tomato as a Model

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A genome-wide resource for the analysis of protein localisation in Drosophila

Sarov, M., Barz, C., Jambor, H., Hein, M. Y., Schmied, C., Suchold, D., Stender, B., Janosch, S., KJ, V. V., Krishnan, R., et al. (2016) · eLife · doi:10.7554/elife.12068 · Cited by 359

A genetic, genomic, and computational resource for exploring neural circuit function

Davis, F. P., Nern, A., Picard, S., Reiser, M. B., Rubin, G. M., Eddy, S. R., & Henry, G. L. (2020) · eLife · doi:10.7554/elife.50901 · Cited by 268

Cell-Type-Specific Profiling of Gene Expression and Chromatin Binding without Cell Isolation: Assaying RNA Pol II Occupancy in Neural Stem Cells

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An organ boundary‐enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation

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Liver-fibrosis-activated transcriptional networks govern hepatocyte reprogramming and intra-hepatic communication

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Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

Steiner, F. A., Talbert, P. B., Kasinathan, S., Deal, R. B., & Henikoff, S. (2012) · Genome Research · doi:10.1101/gr.131748.111 · Cited by 123

Analytical tools and current challenges in the modern era of neuroepigenomics

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A macrophage-hepatocyte glucocorticoid receptor axis coordinates fasting ketogenesis

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Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3′-end-seq

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