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Cited by 144

The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.

The C. elegans LC3 Acts Downstream of GABARAP to Degrade Autophagosomes by Interacting with the HOPS Subunit VPS39

Manil-Ségalen, Marion, Lefebvre, Christophe, Jenzer, Céline, Trichet, Michael, Boulogne, Claire, Satiat-Jeunemaitre, Béatrice, Legouis, Renaud·2014·Developmental Cell
DOI 10.1016/j.devcel.2013.11.022
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Crossref · 10.1016/j.devcel.2013.11.022

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  • After this reaction, the probe can be fixed and remains in the mitochondria independent of subsequent alterations in mitochondrial function or mitochondrial membrane potential.

    “After this reaction, the probe can be fixed and remains in the mitochondria independent of subsequent alterations in mitochondrial function or mitochondrial membrane potential [1115,1117,1118].”

    From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [1115]

    The Immunofluorescence and Dye Staining Experiments passage (page unavailable) says mitochondria were stained in vivo or after methanol fixation. It does not identify the probe or say that a probe remains in mitochondria despite later changes in mitochondrial function or membrane potential. Searches for probe fixation and mitochondrial membrane potential found no passage addressing those properties. (LLM, conf=0.76)

    Experimental — accuracy not yet measured

  • These probes concentrate in mitochondria due to their negative charge and react with the reduced thiols present in mitochondrial matrix proteins.

    “These probes concentrate in mitochondria due to their negative charge and react with the reduced thiols present in mitochondrial matrix proteins [1114][1115][1116].”

    From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [1115]

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Research works printed but not linked: 51

  1. Al Rawi, 2011, Postfertilization autophagy of sperm organelles prevents paternal mitochondrial DNA transmission, Science, 334, 1144, 10.1126/science.1211878 · DOI · Paper page
  2. Al Rawi, 2012, Allophagy: a macroautophagic process degrading spermatozoid-inherited organelles, Autophagy, 8, 421, 10.4161/auto.19242 · DOI · Paper page
  3. Alberti, 2010, The autophagosomal protein LGG-2 acts synergistically with LGG-1 in Dauer formation and longevity in C. elegans, Autophagy, 6, 622, 10.4161/auto.6.5.12252 · DOI
  4. Alemu, 2012, ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs, J. Biol. Chem., 287, 39275, 10.1074/jbc.M112.378109 · DOI
  5. Atlashkin, 2003, Deletion of the SNARE vti1b in mice results in the loss of a single SNARE partner, syntaxin 8, Mol. Cell. Biol., 23, 5198, 10.1128/MCB.23.15.5198-5207.2003 · DOI
  6. Behrends, 2010, Network organization of the human autophagy system, Nature, 466, 68, 10.1038/nature09204 · DOI · Paper page
  7. Brenner, 1974, The genetics of Caenorhabditis elegans, Genetics, 77, 71, 10.1093/genetics/77.1.71 · DOI
  8. Bröcker, 2012, Molecular architecture of the multisubunit homotypic fusion and vacuole protein sorting (HOPS) tethering complex, Proc. Natl. Acad. Sci. USA, 109, 1991, 10.1073/pnas.1117797109 · DOI
  9. Caplan, 2001, Human Vam6p promotes lysosome clustering and fusion in vivo, J. Cell Biol., 154, 109, 10.1083/jcb.200102142 · DOI
  10. Djeddi, 2012, Induction of autophagy in ESCRT mutants is an adaptive response for cell survival in C. elegans, J. Cell Sci., 125, 685, 10.1242/jcs.091702 · DOI
  11. Fader, 2009, TI-VAMP/VAMP7 and VAMP3/cellubrevin: two v-SNARE proteins involved in specific steps of the autophagy/multivesicular body pathways, Biochim. Biophys. Acta, 1793, 1901, 10.1016/j.bbamcr.2009.09.011 · DOI
  12. Furuta, 2010, Combinational soluble N-ethylmaleimide-sensitive factor attachment protein receptor proteins VAMP8 and Vti1b mediate fusion of antimicrobial and canonical autophagosomes with lysosomes, Mol. Biol. Cell, 21, 1001, 10.1091/mbc.e09-08-0693 · DOI
  13. Ganley, 2011, Distinct autophagosomal-lysosomal fusion mechanism revealed by thapsigargin-induced autophagy arrest, Mol. Cell, 42, 731, 10.1016/j.molcel.2011.04.024 · DOI
  14. Gutierrez, 2004, Rab7 is required for the normal progression of the autophagic pathway in mammalian cells, J. Cell Sci., 117, 2687, 10.1242/jcs.01114 · DOI
  15. Itakura, 2012, The hairpin-type tail-anchored SNARE syntaxin 17 targets to autophagosomes for fusion with endosomes/lysosomes, Cell, 151, 1256, 10.1016/j.cell.2012.11.001 · DOI
  16. Jäger, 2004, Role for Rab7 in maturation of late autophagic vacuoles, J. Cell Sci., 117, 4837, 10.1242/jcs.01370 · DOI
  17. Kabeya, 2004, LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation, J. Cell Sci., 117, 2805, 10.1242/jcs.01131 · DOI · Paper page
  18. Kamath, 2003, Systematic functional analysis of the Caenorhabditis elegans genome using RNAi, Nature, 421, 231, 10.1038/nature01278 · DOI
  19. Klionsky, 2003, A unified nomenclature for yeast autophagy-related genes, Dev. Cell, 5, 539, 10.1016/S1534-5807(03)00296-X · DOI
  20. Legouis, 2000, LET-413 is a basolateral protein required for the assembly of adherens junctions in Caenorhabditis elegans, Nat. Cell Biol., 2, 415, 10.1038/35017046 · DOI · Paper page
  21. Lindmo, 2006, A dual function for Deep orange in programmed autophagy in the Drosophila melanogaster fat body, Exp. Cell Res., 312, 2018, 10.1016/j.yexcr.2006.03.002 · DOI
  22. Liu, 2012, LAAT-1 is the lysosomal lysine/arginine transporter that maintains amino acid homeostasis, Science, 337, 351, 10.1126/science.1220281 · DOI
  23. Meléndez, 2008, The cell biology of autophagy in metazoans: a developing story, Development, 135, 2347, 10.1242/dev.016105 · DOI
  24. Meléndez, 2009, Autophagy in C. elegans, WormBook, 1, 10.1895/wormbook.1.147.1 · DOI
  25. Meléndez, 2003, Autophagy genes are essential for Dauer development and life-span extension in C. elegans, Science, 301, 1387, 10.1126/science.1087782 · DOI · Paper page
  26. Michelet, 2009, The ESCRT-III protein CeVPS-32 is enriched in domains distinct from CeVPS-27 and CeVPS-23 at the endosomal membrane of epithelial cells, Biol. Cell, 101, 599, 10.1042/BC20090025 · DOI
  27. Mizushima, 2007, Autophagy: process and function, Genes Dev., 21, 2861, 10.1101/gad.1599207 · DOI
  28. Moreau, 2011, Autophagosome precursor maturation requires homotypic fusion, Cell, 146, 303, 10.1016/j.cell.2011.06.023 · DOI
  29. Nair, 2011, SNARE proteins are required for macroautophagy, Cell, 146, 290, 10.1016/j.cell.2011.06.022 · DOI
  30. Nakatogawa, 2007, Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion, Cell, 130, 165, 10.1016/j.cell.2007.05.021 · DOI
  31. Peralta, 2010, Differential effects of TBC1D15 and mammalian Vps39 on Rab7 activation state, lysosomal morphology, and growth factor dependence, J. Biol. Chem., 285, 16814, 10.1074/jbc.M110.111633 · DOI
  32. Plemel, 2011, Subunit organization and Rab interactions of Vps-C protein complexes that control endolysosomal membrane traffic, Mol. Biol. Cell, 22, 1353, 10.1091/mbc.e10-03-0260 · DOI
  33. Poupon, 2003, The role of mVps18p in clustering, fusion, and intracellular localization of late endocytic organelles, Mol. Biol. Cell, 14, 4015, 10.1091/mbc.e03-01-0040 · DOI
  34. Ravikumar, 2009, Mammalian macroautophagy at a glance, J. Cell Sci., 122, 1707, 10.1242/jcs.031773 · DOI
  35. Reggiori, 2002, Autophagy in the eukaryotic cell, Eukaryot. Cell, 1, 11, 10.1128/EC.01.1.11-21.2002 · DOI
  36. Renna, 2011, Autophagic substrate clearance requires activity of the syntaxin-5 SNARE complex, J. Cell Sci., 124, 469, 10.1242/jcs.076489 · DOI
  37. Roudier, 2005, CeVPS-27 is an endosomal protein required for the molting and the endocytic trafficking of the low-density lipoprotein receptor-related protein 1 in Caenorhabditis elegans, Traffic, 6, 695, 10.1111/j.1600-0854.2005.00309.x · DOI
  38. Sato, 2011, Degradation of paternal mitochondria by fertilization-triggered autophagy in C. elegans embryos, Science, 334, 1141, 10.1126/science.1210333 · DOI
  39. Shpilka, 2012, Ubiquitin-like proteins and autophagy at a glance, J. Cell Sci., 125, 2343, 10.1242/jcs.093757 · DOI
  40. Shvets, 2011, Dissecting the involvement of LC3B and GATE-16 in p62 recruitment into autophagosomes, Autophagy, 7, 683, 10.4161/auto.7.7.15279 · DOI
  41. Solinger, 2013, Tethering complexes in the endocytic pathway: CORVET and HOPS, FEBS J., 280, 2743, 10.1111/febs.12151 · DOI
  42. Tian, 2010, C. elegans screen identifies autophagy genes specific to multicellular organisms, Cell, 141, 1042, 10.1016/j.cell.2010.04.034 · DOI · Paper page
  43. von Muhlinen, 2012, LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy, Mol. Cell, 48, 329, 10.1016/j.molcel.2012.08.024 · DOI · Paper page
  44. Watanabe, 2012, Nano-fEM: protein localization using photo-activated localization microscopy and electron microscopy, J. Vis. Exp., e3995
  45. Weidberg, 2010, LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis, EMBO J., 29, 1792, 10.1038/emboj.2010.74 · DOI · Paper page
  46. Weidberg, 2011, LC3 and GATE-16 N termini mediate membrane fusion processes required for autophagosome biogenesis, Dev. Cell, 20, 444, 10.1016/j.devcel.2011.02.006 · DOI
  47. Wu, 2012, Differential function of the two Atg4 homologues in the aggrephagy pathway in Caenorhabditis elegans, J. Biol. Chem., 287, 29457, 10.1074/jbc.M112.365676 · DOI
  48. Xie, 2007, Autophagosome formation: core machinery and adaptations, Nat. Cell Biol., 9, 1102, 10.1038/ncb1007-1102 · DOI
  49. Xin, 2001, Cloning, expression patterns, and chromosome localization of three human and two mouse homologues of GABA(A) receptor-associated protein, Genomics, 74, 408, 10.1006/geno.2001.6555 · DOI · Paper page
  50. Yoshimori, 2004, Autophagy: a regulated bulk degradation process inside cells, Biochem. Biophys. Res. Commun., 313, 453, 10.1016/j.bbrc.2003.07.023 · DOI
  51. Zhang, 2009, SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans, Cell, 136, 308, 10.1016/j.cell.2008.12.022 · DOI

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Metadata

Authors
Manil-Ségalen, M., Lefebvre, C., Jenzer, C., Trichet, M., Boulogne, C., Satiat-Jeunemaitre, B., & Legouis, R.
Venue
Developmental Cell
Publisher
Elsevier BV
Published
2014-01
Volume
28
Issue
1
Pages
43-55
ISSN
1534-5807
DOI
10.1016/j.devcel.2013.11.022
Cited by
144
References
7
Language
en
Update notices
erratum (2014-07-14)
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