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Modelling and mapping soil organic carbon stocks in Brazil
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Abstract Brazil has extensive forests and savannas on deep weathered soils and plays a key role in the discussions about carbon sequestration, but the distribution of soil organic carbon (SOC) stocks up to 1 m depth has not been investigated in Brazil using machine learning techniques. In this study, we applied a methodological framework to optimize the prediction of SOC stocks for the entire Brazilian territory and determine how the environmental heterogeneity of Brazil influences the SOC stocks distribution. We used a legacy dataset of 8227 soil profiles which consisted of 37,693 samples. For each profile, the vertical distribution of SOC and bulk density were interpolated to standard depths (0–5, 5–15, 15–30, 30–60 and 60–100 cm) using mass preserving equal-area quadratic splines. The covariates database was composed of 74 variables including bioclimatic (temperature and precipitation) data, soil and biome maps, vegetation indexes and morphometric maps derived from a digital elevation model, with a 1 km spatial resolution. To obtain the best prediction performance, we tested four machine learning algorithms: Random Forests, Cubist, Generalized Linear Model Boosting and Support Vector Machines. Random Forests showed the best performance in predicting SOC stocks for all depths, with the highest performance at 30–60 cm for training (R2 = 0.32) and validation (R2 = 0.33); hence, it was selected for the spatial prediction of SOC stocks. The most important covariates selected by Random Forests using the recursive feature elimination were: soil class, sum of monthly mean temperature (SAMT), precipitation, slope height and vegetation indexes (NDVI, GPP). In total, Brazilian soils store approximately 71.3 PgC within the top 100 cm, where the first 0–30 cm contains almost 36 PgC. Approximately 31% of the total SOC stocks (22.2 PgC) occurs in protected areas (2.6 million km2), which are not subjected to land use pressure and carbon losses. Although the Amazon biome has the highest amount of stored SOC (36.1 PgC), its soils do not represent a good potential for carbon accumulation. Among soil classes, the Luvisols showed the lowest SOC density (6.45 kg m−2) and the Histosols presented the highest values (14.87 kg m−2). More than 57% of the total SOC was found in nutrient-poor, deep-weathered Ferralsols and Acrisols, which are the dominant soils in Brazil. The presented methodological framework covers all steps of prediction process, building maps with known accuracy and has great potential to be used in future soil carbon inventories at large scales. Concerning conservation issues, the results highlight the importance of nature reserves for protecting SOC in the long-term.
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Citations
Cites
Breiman, L. (2001) · Machine Learning · doi:10.1023/a:1010933404324 · Cited by 133,538
Cortes, C., & Vapnik, V. (1995) · Machine Learning · doi:10.1007/bf00994018 · Cited by 59,421
Greedy function approximation: A gradient boosting machine
Friedman, J. H. (2001) · The Annals of Statistics · doi:10.1214/aos/1013203451 · Cited by 30,731
Very high resolution interpolated climate surfaces for global land areas
Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., & Jarvis, A. (2005) · International Journal of Climatology · doi:10.1002/joc.1276 · Cited by 19,825
Classification and Regression by randomForest
Liaw, A. I., & Wiener, M. C. (2007) · Cited by 18,594
A tutorial on support vector regression
Smola, A. J., & Schölkopf, B. (2004) · Statistics and Computing · doi:10.1023/b:stco.0000035301.49549.88 · Cited by 13,387
Köppen's climate classification map for Brazil
Alvares, C. A., Stape, J. L., Sentelhas, P. C., de Moraes Gonçalves, J. L., & Sparovek, G. (2013) · Meteorologische Zeitschrift · doi:10.1127/0941-2948/2013/0507 · Cited by 12,125
Brown, R. A., Hastie, T. J., & Tibshirani, R. J. (1991) · Biometrics · doi:10.2307/2532174 · Cited by 8,176
Koyak, R. A., Hastie, T. J., & Tibshirani, R. J. (1991) · Journal of the American Statistical Association · doi:10.2307/2290538 · Cited by 7,596
Temperature sensitivity of soil carbon decomposition and feedbacks to climate change
Davidson, E. A., & Janssens, I. A. (2006) · Nature · doi:10.1038/nature04514 · Cited by 6,919
Kuhn, M., & Johnson, K. (2013) · doi:10.1007/978-1-4614-6849-3 · Cited by 6,788
THE VERTICAL DISTRIBUTION OF SOIL ORGANIC CARBON AND ITS RELATION TO CLIMATE AND VEGETATION
Jobbágy, E. G., & Jackson, R. B. (2000) · Ecological Applications · doi:10.1890/1051-0761(2000)010[0423:tvdoso]2.0.co;2 · Cited by 5,428
Soil carbon sequestration to mitigate climate change
Lal, R. (2004) · Geoderma · doi:10.1016/j.geoderma.2004.01.032 · Cited by 3,936
McBratney, A. B., Mendonça Santos, M. L., & Minasny, B. (2003) · Geoderma · doi:10.1016/s0016-7061(03)00223-4 · Cited by 3,651
Stability of organic carbon in deep soil layers controlled by fresh carbon supply
Fontaine, S., Barot, S., Barré, P., Bdioui, N., Mary, B., & Rumpel, C. (2007) · Nature · doi:10.1038/nature06275 · Cited by 2,279
Practical selection of SVM parameters and noise estimation for SVM regression
Cherkassky, V., & Ma, Y. (2004) · Neural Networks · doi:10.1016/s0893-6080(03)00169-2 · Cited by 2,030
Climate change 2014 : mitigation of climate change
Edenhofer, O., Pichs-Madruga, R., & Sokona, Y. (2014) · University of North Texas Digital Library (University of North Texas) · Cited by 1,637
Global soil carbon: understanding and managing the largest terrestrial carbon pool
Scharlemann, J. P., Tanner, E. V., Hiederer, R., & Kapos, V. (2014) · Carbon Management · doi:10.4155/cmt.13.77 · Cited by 1,612
Anthropogenic disturbance in tropical forests can double biodiversity loss from deforestation
Barlow, J., Lennox, G. D., Ferreira, J., Berenguer, E., Lees, A. C., Nally, R. M., Thomson, J. R., Ferraz, S. F. D. B., Louzada, J., Oliveira, V. H. F., et al. (2016) · Nature · doi:10.1038/nature18326 · Cited by 1,128
Arcing classifier (with discussion and a rejoinder by the author)
Breiman, L. (1998) · The Annals of Statistics · doi:10.1214/aos/1024691079 · Cited by 1,105
Advanced Data Mining Techniques
(2008) · Springer eBooks · doi:10.1007/978-3-540-76917-0 · Cited by 996
Hengl, T., Heuvelink, G. B. M., Kempen, B., Leenaars, J. G. B., Walsh, M. G., Shepherd, K. D., Sila, A., MacMillan, R. A., Mendes de Jesus, J., Tamene, L., et al. (2015) · PLOS ONE · doi:10.1371/journal.pone.0125814 · Cited by 935
Boosting With the L2Loss: Regression and Classification
Bühlmann, P., & Yu, B. (2003) · Journal of the American Statistical Association · doi:10.1198/016214503000125 · Cited by 845
Relationships between mineral surfaces and organic carbon concentrations in soils and sediments
Mayer, L. M. (1994) · Chemical Geology · doi:10.1016/0009-2541(94)90063-9 · Cited by 717
Mapping continuous depth functions of soil carbon storage and available water capacity
Malone, B. P., McBratney, A. B., Minasny, B., & Laslett, G. M. (2009) · Geoderma · doi:10.1016/j.geoderma.2009.10.007 · Cited by 506
Modelling soil attribute depth functions with equal-area quadratic smoothing splines
Bishop, T. F. A., McBratney, A. B., & Laslett, G. M. (1999) · Geoderma · doi:10.1016/s0016-7061(99)00003-8 · Cited by 500
Digital Mapping of Soil Carbon
Minasny, B., McBratney, A. B., Malone, B. P., & Wheeler, I. (2013) · Advances in Agronomy · doi:10.1016/b978-0-12-405942-9.00001-3 · Cited by 471
Stevens, A., Nocita, M., Tóth, G., Montanarella, L., & van Wesemael, B. (2013) · PLoS ONE · doi:10.1371/journal.pone.0066409 · Cited by 464
Yang, R.-M., Zhang, G.-L., Liu, F., Lu, Y.-Y., Yang, F., Yang, F., Yang, M., Zhao, Y.-G., & Li, D.-C. (2016) · Ecological Indicators · doi:10.1016/j.ecolind.2015.08.036 · Cited by 456
Climate change consequences on the biome distribution in tropical South America
Salazar, L. F., Nobre, C. A., & Oyama, M. D. (2007) · Geophysical Research Letters · doi:10.1029/2007gl029695 · Cited by 456
Carbon sequestration in two Brazilian Cerrado soils under no-till
Bayer, C., Martin-Neto, L., Mielniczuk, J., Pavinato, A., & Dieckow, J. (2006) · Soil and Tillage Research · doi:10.1016/j.still.2005.02.023 · Cited by 434
Machine learning approaches for estimation of prediction interval for the model output
Shrestha, D. L., & Solomatine, D. P. (2006) · Neural Networks · doi:10.1016/j.neunet.2006.01.012 · Cited by 428
Boosting for high-dimensional linear models
Bühlmann, P. (2006) · The Annals of Statistics · doi:10.1214/009053606000000092 · Cited by 410
Arrouays, D., Grundy, M. G., Hartemink, A. E., Hempel, J. W., Heuvelink, G. B. M., Hong, S. Y., Lagacherie, P., Lelyk, G., McBratney, A. B., McKenzie, N. J., et al. (2014) · Advances in Agronomy · doi:10.1016/b978-0-12-800137-0.00003-0 · Cited by 396
Machine learning for predicting soil classes in three semi-arid landscapes
Brungard, C. W., Boettinger, J. L., Duniway, M. C., Wills, S. A., & Edwards, T. C. (2015) · Geoderma · doi:10.1016/j.geoderma.2014.09.019 · Cited by 395
Bernoux, M., Carvalho, M. D. C. S., Volkoff, B., & Cerri, C. C. (2002) · Soil Science Society of America Journal · doi:10.2136/sssaj2002.0888 · Cited by 378
Digital Mapping of Soil Organic Carbon Contents and Stocks in Denmark
Adhikari, K., Hartemink, A. E., Minasny, B., Bou Kheir, R., Greve, M. B., & Greve, M. H. (2014) · PLoS ONE · doi:10.1371/journal.pone.0105519 · Cited by 364
Powers, J. S., Corre, M. D., Twine, T. E., & Veldkamp, E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1016774108 · Cited by 282
ESTIMATING SOIL WATER RETENTION CHARACTERISTICS FROM LIMITED DATA IN BRAZILIAN AMAZONIA
Tomasella, J., & Hodnett, M. G. (1998) · Soil Science · doi:10.1097/00010694-199803000-00003 · Cited by 270
High‐Resolution 3‐D Mapping of Soil Texture in Denmark
Adhikari, K., Kheir, R. B., Greve, M. B., Bøcher, P. K., Malone, B., Minasny, B., McBratney, A. B., & Greve, M. H. (2013) · Soil Science Society of America Journal · doi:10.2136/sssaj2012.0275 · Cited by 267
A novel method to estimate model uncertainty using machine learning techniques
Solomatine, D. P., & Shrestha, D. L. (2009) · Water Resources Research · doi:10.1029/2008wr006839 · Cited by 246
Harrison-Kirk, T., Beare, M. H., Meenken, E. D., & Condron, L. M. (2013) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2012.10.008 · Cited by 244
Wang, B., Waters, C., Orgill, S., Gray, J., Cowie, A., Clark, A., & Liu, D. L. (2018) · Science of The Total Environment · doi:10.1016/j.scitotenv.2018.02.204 · Cited by 244
The carbon content of topsoil and its geographical distribution in France
Arrouays, D., Deslais, W., & Badeau, V. (2001) · Soil Use and Management · doi:10.1111/j.1475-2743.2001.tb00002.x · Cited by 239
Advanced data mining techniques
(2008) · Choice Reviews Online · doi:10.5860/choice.45-6838 · Cited by 233
A soil carbon and land use database for the United Kingdom
Bradley, R. I., Milne, R., Bell, J., Lilly, A., Jordan, C., & Higgins, A. (2005) · Soil Use and Management · doi:10.1079/sum2005351 · Cited by 218
Mitigation of atmospheric CO 2 concentrations by increased carbon sequestration in the soil
Batjes, N. H. (1998) · Biology and Fertility of Soils · doi:10.1007/s003740050425 · Cited by 216
Bulk Densities of Brazilian Amazon Soils Related to Other Soil Properties
Bernoux, M., Cerri, C., Arrouays, D., Jolivet, C., & Volkoff, B. (1998) · Soil Science Society of America Journal · doi:10.2136/sssaj1998.03615995006200030029x · Cited by 216
Soil Carbon Stocks of the Brazilian Amazon Basin
Moraes, J. L., Cerri, C. C., Melillo, J. M., Kicklighter, D., Neill, C., Skole, D. L., & Steudler, P. A. (1995) · Soil Science Society of America Journal · doi:10.2136/sssaj1995.03615995005900010038x · Cited by 214
Prediction and digital mapping of soil carbon storage in the Lower Namoi Valley
Minasny, B., McBratney, A. B., Mendonça-Santos, M. L., Odeh, I. O. A., & Guyon, B. (2006) · Soil Research · doi:10.1071/sr05136 · Cited by 205
Nawar, S., & Mouazen, A. M. (2017) · Sensors · doi:10.3390/s17102428 · Cited by 201
National versus global modelling the 3D distribution of soil organic carbon in mainland France
Mulder, V. L., Lacoste, M., Richer-de-Forges, A. C., Martin, M. P., & Arrouays, D. (2016) · Geoderma · doi:10.1016/j.geoderma.2015.08.035 · Cited by 197
Influence of topography on soil organic carbon dynamics in a Southern California grassland
Fissore, C., Dalzell, B. J., Berhe, A. A., Voegtle, M., Evans, M., & Wu, A. (2017) · CATENA · doi:10.1016/j.catena.2016.09.016 · Cited by 196
Building and testing conceptual and empirical models for predicting soil bulk density
Tranter, G., Minasny, B., Mcbratney, A. B., Murphy, B., Mckenzie, N. J., Grundy, M., & Brough, D. (2007) · Soil Use and Management · doi:10.1111/j.1475-2743.2007.00092.x · Cited by 191
Carbon and nitrogen stocks in the soils of the Amazon Region
Batjes, N. H., & Dijkshoorn, J. A. (1999) · Geoderma · doi:10.1016/s0016-7061(98)00086-x · Cited by 188
Predicting Soil Organic Carbon Stock Using Profile Depth Distribution Functions and Ordinary Kriging
Mishra, U., Lal, R., Slater, B., Calhoun, F., Liu, D., & Van Meirvenne, M. (2009) · Soil Science Society of America Journal · doi:10.2136/sssaj2007.0410 · Cited by 187
Lenka, N. K., & Lal, R. (2013) · Soil and Tillage Research · doi:10.1016/j.still.2012.08.011 · Cited by 175
Global climate change and tropical ecosystems
Scholes, R. J. (2002) · Geoderma · doi:10.1016/s0016-7061(01)00119-7 · Cited by 148
Rudiyanto, Minasny, B., Setiawan, B. I., Saptomo, S. K., & McBratney, A. B. (2018) · Geoderma · doi:10.1016/j.geoderma.2017.10.018 · Cited by 143
Modelling complexity : The limits to prediction
Batty, M., & Torrens, P. M. (2011) · Cybergeo · doi:10.4000/cybergeo.1035 · Cited by 142
Worldwide organic soil carbon and nitrogen data
Lab., T. (. S. O. R. N., Zinke, P. J., Stangenberger, A. G., Post, W., Emanual, W. R., & Olson, J. (1986) · doi:10.2172/543663 · Cited by 138
Hounkpatin, O., de Hipt, F. O., Bossa, A. Y., Welp, G., & Amelung, W. (2018) · CATENA · doi:10.1016/j.catena.2018.04.013 · Cited by 135
Bui, E. N., Henderson, B. L., & Viergever, K. M. (2009) · Global Biogeochemical Cycles · doi:10.1029/2009gb003506 · Cited by 124
Digital mapping of soil carbon in a viticultural region of Southern Brazil
Bonfatti, B. R., Hartemink, A. E., Giasson, É., Tornquist, C. G., & Adhikari, K. (2015) · Geoderma · doi:10.1016/j.geoderma.2015.07.016 · Cited by 109
Meersmans, J., van Wesemael, B., Ridder, F. D., & Molle, M. V. (2009) · Geoderma · doi:10.1016/j.geoderma.2009.05.015 · Cited by 108
Spatial prediction of soil properties in temperate mountain regions using support vector regression
Ballabio, C. (2009) · Geoderma · doi:10.1016/j.geoderma.2009.04.022 · Cited by 107
Ließ, M., Schmidt, J., & Glaser, B. (2016) · PLoS ONE · doi:10.1371/journal.pone.0153673 · Cited by 100
Rossel, R. A. V., Brus, D. J., Lobsey, C. R., Shi, Z., & McLachlan, G. (2015) · Geoderma · doi:10.1016/j.geoderma.2015.11.016 · Cited by 97
Lettens, S., Orshoven, J. V., van Wesemael, B., & Muys, B. (2004) · Soil Use and Management · doi:10.1111/j.1475-2743.2004.tb00335.x · Cited by 95
Ottoy, S., Vos, B. D., Sindayihebura, A., Hermy, M., & Orshoven, J. V. (2017) · Ecological Indicators · doi:10.1016/j.ecolind.2017.02.010 · Cited by 95
Grüneberg, E., Schöning, I., Hessenmöller, D., Schulze, E., & Weisser, W. W. (2013) · Forest Ecology and Management · doi:10.1016/j.foreco.2013.03.014 · Cited by 94
Bootstrap prediction intervals for linear, nonlinear and nonparametric autoregressions
Li, P., & Politis, D. N. (2014) · Journal of Statistical Planning and Inference · doi:10.1016/j.jspi.2014.10.003 · Cited by 93
Evaluation of pedotransfer functions for predicting soil bulk density for U.S. soils
Abdelbaki, A. M. (2016) · Ain Shams Engineering Journal · doi:10.1016/j.asej.2016.12.002 · Cited by 92
Generalized linear models in soil science
Lane, P. W. (2002) · European Journal of Soil Science · doi:10.1046/j.1365-2389.2002.00440.x · Cited by 88
Estimating soil organic carbon in Europe based on data collected through an European network
Panagos, P., Hiederer, R., Liedekerke, M. V., et al. (2012) · Ecological Indicators · doi:10.1016/j.ecolind.2012.07.020 · Cited by 88
Spatial distribution of soil organic carbon stock in Moso bamboo forests in subtropical China
Tang, X., Xia, M., Pérez‐Cruzado, C., Guan, F., & Fan, S. (2017) · Scientific Reports · doi:10.1038/srep42640 · Cited by 88
Precise estimation of soil organic carbon stocks in the northeast Tibetan Plateau
Yang, R., Zhang, G., Yang, F., Zhi, J., Yang, F., Liu, F., Zhao, Y.-G., & Li, C. (2016) · Scientific Reports · doi:10.1038/srep21842 · Cited by 77
Vegetation and Topographic Control on Spatial Variability of Soil Organic Carbon
Oueslati, I., Allamano, P., Bonifacio, E., & Claps, P. (2012) · Pedosphere · doi:10.1016/s1002-0160(12)60079-4 · Cited by 75
A National Soil Profile Database for Brazil Available to International Scientists
Cooper, M., Mendes, L. M. S., Silva, W. L. C., & Sparovek, G. (2005) · Soil Science Society of America Journal · doi:10.2136/sssaj2004.0140 · Cited by 75
Worldwide Organic Soil Carbon and Nitrogen Data (1986)
Zinke, P. J., Stangenberger, A. G., W.M. Post, et al. (1986) · Carbon Dioxide Information Analysis Center (CDIAC) Datasets · doi:10.3334/cdiac/lue.ndp018 · Cited by 72
de Souza, E., Filho, E. I. F., Schaefer, C. E. G. R., Batjes, N. H., dos Santos, G. R., & Pontes, L. M. (2016) · Scientia Agricola · doi:10.1590/0103-9016-2015-0485 · Cited by 64
Self-citationNyssen, J., Temesgen, H., Lemenih, M., Zenebe, A., Haregeweyn, N., & Haile, M. T. (2008) · Geoderma · doi:10.1016/j.geoderma.2008.06.007 · Cited by 53
A new high‐resolution nationwide aboveground carbon map for Brazil
Englund, O., Sparovek, G., Berndes, G., Freitas, F. L. M., Ometto, J. P., Oliveira, P. V. C., Costa, C., & Lapola, D. M. (2017) · Geo Geography and Environment · doi:10.1002/geo2.45 · Cited by 45
Assessing Brazil's carbon budget: I. Biotic carbon pools
Schroeder, P. E., & Winjum, J. K. (1995) · Forest Ecology and Management · doi:10.1016/0378-1127(95)03532-f · Cited by 39
Digital Mapping of Soil Classes and Continuous Soil Properties
Malone, B., Odgers, N. P., Stockmann, U., Minasny, B., & McBratney, A. B. (2018) · Progress in soil science · doi:10.1007/978-3-319-63439-5_12 · Cited by 29
Gamble, J. D., Feyereisen, G. W., Papiernik, S. K., Wente, C. D., & Baker, J. M. (2017) · Soil Science Society of America Journal · doi:10.2136/sssaj2017.04.0138 · Cited by 16
Metadata
- Authors
- Gomes, L. C., Faria, R. M., de Souza, E., Veloso, G. V., Schaefer, C. E. G. R., & Filho, E. I. F.
- Venue
- Geoderma
- Publisher
- Elsevier BV
- Published
- 2019-04
- Volume
- 340
- Pages
- 337-350
- ISSN
- 0016-7061 (ISSN-L)
- OpenAlex
- W2909736607
- Cited by
- 470
- References
- 86
- FWCI
- 19.28
- Type
- journal article
- Language
- en
- Open access
- green
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