The DOI matches its Crossref record; 56 of the 56 references it cites were found in a registry or an index.
Tryptophan Catabolites from Microbiota Engage Aryl Hydrocarbon Receptor and Balance Mucosal Reactivity via Interleukin-22
Open accessAbstract
Endogenous tryptophan (Trp) metabolites have an important role in mammalian gut immune homeostasis, yet the potential contribution of Trp metabolites from resident microbiota has never been addressed experimentally. Here, we describe a metabolic pathway whereby Trp metabolites from the microbiota balance mucosal reactivity in mice. Switching from sugar to Trp as an energy source (e.g., under conditions of unrestricted Trp availability), highly adaptive lactobacilli are expanded and produce an aryl hydrocarbon receptor (AhR) ligand-indole-3-aldehyde-that contributes to AhR-dependent Il22 transcription. The resulting IL-22-dependent balanced mucosal response allows for survival of mixed microbial communities yet provides colonization resistance to the fungus Candida albicans and mucosal protection from inflammation. Thus, the microbiota-AhR axis might represent an important strategy pursued by coevolutive commensalism for fine tuning host mucosal reactivity contingent on Trp catabolism.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“In Ido1−/− mice, which cannot produce the endogenous AhR ligand l-kynurenine, bacteria that are able to metabolize dietary tryptophan and produce indole derivatives gain a selective advantage due to the increased availability of tryptophan.”
From Understanding the Holobiont: How Microbial Metabolites Affect Human Health and Shape the Immune System (2017) · cites this paper as Zelante et al., 2013
In the citing paper
“Indole derivatives produced by these bacteria can then compensate for the lack of endogenously produced AhR ligands, reflecting an interesting mutualistic balance between the needs of microbiome and host (Zelante et al., 2013).”
From Understanding the Holobiont: How Microbial Metabolites Affect Human Health and Shape the Immune System (2017) · cites this paper as Zelante et al., 2013
In the citing paper
“Activation of AhR by tryptophan metabolites promotes immune cell maturation and decreased pathogen colonization.89”
From Regulation of Intestinal Barrier Function by Microbial Metabolites (2021) · cites this paper as [89]
Citations
Cites
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
Ivanov, I. I., Atarashi, K., Manel, N., Brodie, E. L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K. C., Santee, C. A., Lynch, S. V., et al. (2009) · Cell · doi:10.1016/j.cell.2009.09.033 · Cited by 4,554
Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
Atarashi, K., Tanoue, T., Shima, T., Imaoka, A., Kuwahara, T., Momose, Y., Cheng, G., Yamasaki, S., Saito, T., Ohba, Y., et al. (2011) · Science · doi:10.1126/science.1198469 · Cited by 3,752
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
Wikoff, W. R., Anfora, A. T., Liu, J., Schultz, P. G., Lesley, S. A., Peters, E. C., & Siuzdak, G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812874106 · Cited by 2,677
Innate lymphoid cells — a proposal for uniform nomenclature
Spits, H., Artis, D., Colonna, M., Diefenbach, A., Disanto, J. D., Eberl, G., Koyasu, S., Locksley, R., McKenzie, A., Mebius, R., et al. (2013) · Nature reviews. Immunology · doi:10.1038/nri3365 · Cited by 2,380
An endogenous tumour-promoting ligand of the human aryl hydrocarbon receptor
Opitz, C. A., Litzenburger, U. M., Sahm, F., Ott, M., Tritschler, I., Trump, S., Schumacher, T., Jestaedt, L., Schrenk, D., Weller, M., et al. (2011) · Nature · doi:10.1038/nature10491 · Cited by 1,898
Romani, L. (2011) · Nature Reviews Immunology · doi:10.1038/nri2939 · Cited by 1,793
Self-citationAn Interaction between Kynurenine and the Aryl Hydrocarbon Receptor Can Generate Regulatory T Cells
Mezrich, J. D., Fechner, J. H., Zhang, X., Johnson, B. P., Burlingham, W. J., & Bradfield, C. A. (2010) · The Journal of Immunology · doi:10.4049/jimmunol.0903670 · Cited by 1,674
ACE2 links amino acid malnutrition to microbial ecology and intestinal inflammation
Hashimoto, T., Perlot, T., Rehman, A., Trichereau, J., Ishiguro, H., Paolino, M., Sigl, V., Hanada, T., Hanada, R., Lipinski, S., et al. (2012) · Nature · doi:10.1038/nature11228 · Cited by 1,271
Sobel, J. D. (2007) · The Lancet · doi:10.1016/s0140-6736(07)60917-9 · Cited by 1,270
Satoh‐Takayama, N., Vosshenrich, C. A. J., Lesjean‐Pottier, S., Sawa, S., Lochner, M., Rattis, F. M., Mention, J., Thiam, K., Cerf–Bensussan, N., Mandelboim, O., et al. (2008) · Immunity · doi:10.1016/j.immuni.2008.11.001 · Cited by 1,133
Fallarino, F., Grohmann, U., You, S., McGrath, B. C., Cavener, D. R., Vacca, C., Orabona, C., Bianchi, R., Belladonna, M. L., Volpi, C., et al. (2006) · The Journal of Immunology · doi:10.4049/jimmunol.176.11.6752 · Cited by 1,078
Self-citationInteractions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis
Iliev, I. D., Funari, V. A., Taylor, K. D., Nguyen, Q., Reyes, C. N., Strom, S. P., Brown, J., Becker, C. A., Fleshner, P. R., Dubinsky, M., et al. (2012) · Science · doi:10.1126/science.1221789 · Cited by 1,073
Ubeda, C., Taur, Y., Jenq, R. R., Equinda, M. J., Son, T., Samstein, M., Viale, A., Socci, N. D., van den Brink, M. R. M., Kamboj, M., et al. (2010) · Journal of Clinical Investigation · doi:10.1172/jci43918 · Cited by 943
The Aryl Hydrocarbon Receptor Regulates Gut Immunity through Modulation of Innate Lymphoid Cells
Qiu, J., Heller, J. J., Guo, X., Chen, Z. E., Fish, K., Fu, Y., & Zhou, L. (2011) · Immunity · doi:10.1016/j.immuni.2011.11.011 · Cited by 889
Exogenous Stimuli Maintain Intraepithelial Lymphocytes via Aryl Hydrocarbon Receptor Activation
Li, Y., Innocentin, S., Withers, D. R., Roberts, N. A., Gallagher, A., Grigorieva, E. F., Wilhelm, C., & Veldhoen, M. (2011) · Cell · doi:10.1016/j.cell.2011.09.025 · Cited by 837
Lee, J. S., Cella, M., McDonald, K. G., Garlanda, C., Kennedy, G. D., Nukaya, M., Mantovani, A., Kopan, R., Bradfield, C. A., Newberry, R. D., et al. (2012) · Nature Immunology · doi:10.1038/ni.2187 · Cited by 777
Puel, A., Döffinger, R., Natividad, A., Chrabieh, M., Barcenas‐Morales, G., Pïcard, C., Cobat, A., Ouachée-Chardin, M., Toulon, A., Bustamante, J. C., et al. (2010) · The Journal of Experimental Medicine · doi:10.1084/jem.20091983 · Cited by 744
Monteleone, I., Rizzo, A., Sarra, M., Sica, G., Sileri, P., Biancone, L., MacDonald, T. T., Pallone, F., & Monteleone, G. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.04.007 · Cited by 656
Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation
Jenq, R. R., Ubeda, C., Taur, Y., Menezes, C. C., Khanin, R., Dudakov, J. A., Liu, C., West, M. L., Singer, N. V., Equinda, M. J., et al. (2012) · Journal of Experimental Medicine · doi:10.1084/jem.20112408 · Cited by 626
The vaginal microbiome: new information about genital tract flora using molecular based techniques
Lamont, R., Sobel, J. D., Akins, R. A., Hassan, S., Chaiworapongsa, T., Kusanovic, J. P., & Romero, R. J. (2011) · BJOG An International Journal of Obstetrics & Gynaecology · doi:10.1111/j.1471-0528.2010.02840.x · Cited by 497
The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533
Pridmore, R. D., Berger, B. W., Desiere, F., Vilanova, D., Barretto, C., Pittet, A.-C., Zwahlen, M.-C., Rouvet, M., Altermann, E., Barrangou, R., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0307327101 · Cited by 490
IDO and regulatory T cells: a role for reverse signalling and non-canonical NF-κB activation
Puccetti, P., & Grohmann, U. (2007) · Nature reviews. Immunology · doi:10.1038/nri2163 · Cited by 469
Self-citationTannock, G. W., & Savage, D. C. (1974) · Infection and Immunity · doi:10.1128/iai.9.3.591-598.1974 · Cited by 349
van Baarlen, P., Troost, F. J., van Kraaij, C., Hooiveld, G. J. E. J., Boekschoten, M. V., Brummer, R. J., & Kleerebezem, M. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000079107 · Cited by 347
Walter, J., Britton, R. A., & Roos, S. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000099107 · Cited by 341
Sjögren, Y. M., Tomicic, S., Lundberg, A., Böttcher, M. F., Björkstén, B., Sverremark‐Ekström, E., & Jenmalm, M. C. (2009) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2009.03326.x · Cited by 337
A Special Fondness for Lactobacilli
Tannock, G. W. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.6.3189-3194.2004 · Cited by 325
The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
Frese, S. A., Benson, A. K., Tannock, G. W., Loach, D. M., Kim, J., Zhang, M., Oh, P. L., Heng, N. C. K., Patil, P. B., Juge, N., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1001314 · Cited by 312
Manzoni, P., Mostert, M., Leonessa, M., Priolo, C., Farina, D., Monetti, C., Latino, M. A., & Gomirato, G. (2006) · Clinical Infectious Diseases · doi:10.1086/504324 · Cited by 305
IL-22 defines a novel immune pathway of antifungal resistance
De Luca, A., Zelante, T., D'Angelo, C., Zagarella, S., Fallarino, F., Spreca, A., Iannitti, R. G., Bonifazi, P., Renauld, J.-C., Bistoni, F., et al. (2010) · Mucosal Immunology · doi:10.1038/mi.2010.22 · Cited by 265
Self-citationRegulation of Candida albicans Morphogenesis by Fatty Acid Metabolites
Noverr, M. C., & Huffnagle, G. B. (2004) · Infection and Immunity · doi:10.1128/iai.72.11.6206-6210.2004 · Cited by 255
Crellin, N. K., Trifari, S., Kaplan, C. D., Satoh‐Takayama, N., Santo, J. P. D., & Spits, H. (2010) · Immunity · doi:10.1016/j.immuni.2010.10.012 · Cited by 252
Probiotics for prevention of recurrent vulvovaginal candidiasis: a review
Falagas, M. E. (2006) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dkl246 · Cited by 248
The Role of Microbiota and Probiotics in Stress-Induced Gastrointestinal Damage
Lutgendorff, F., Akkermans, L., & Soderholm, J. (2008) · Current Molecular Medicine · doi:10.2174/156652408784533779 · Cited by 230 · cited 2×
“Because lactobacilli are greatly reduced in the neonatal period (Sjögren et al., 2009) and by stress (Lutgendorff et al., 2008; Tannock and Savage, 1974), our data are consistent with the occurrence of neonatal and vaginal candidiasis, clinical conditions under which the empirical use of…”
Abundant and Diverse Fungal Microbiota in the Murine Intestine
Scupham, A. J., Presley, L. L., Wei, B., Bent, E., Griffith, N., McPherson, M., Zhu, F., Oluwadara, O., Rao, N. P., Braun, J. G., et al. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.72.1.793-801.2006 · Cited by 185
Denou, E., Pridmore, R. D., Berger, B. W., Panoff, J.-M., Arigoni, F., & Brüssow, H. (2008) · Journal of Bacteriology · doi:10.1128/jb.01637-07 · Cited by 179
Summers, K. L., Erb‐Downward, J. R., Falkowski, N. R., Young, V. B., Kao, J. Y., & Huffnagle, G. B. (2011) · Infection and Immunity · doi:10.1128/iai.05162-11 · Cited by 151
Dai, X., & Zhu, B. T. (2009) · Journal of Histochemistry & Cytochemistry · doi:10.1369/jhc.2009.953604 · Cited by 128
Boekhorst, J., Siezen, R., Zwahlen, M., Vilanova, D., Pridmore, R., Mercenier, A., Kleerebezem, M., de Vos, W. D., Brüssow, H., & Desiere, F. (2004) · Microbiology · doi:10.1099/mic.0.27392-0 · Cited by 118
Rijnen, L., Bonneau, S., & Yvon, M. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.4873-4880.1999 · Cited by 111
Voltan, S., Martines, D., Elli, M., Brun, P., Longo, S., Porzionato, A., Macchi, V., Renata D'Incà, Scarpa, M., Palù, G., et al. (2008) · Gastroenterology · doi:10.1053/j.gastro.2008.07.007 · Cited by 111
Microbial Interference Between Indigenous Yeast and Lactobacilli in the Rodent Stomach
Savage, D. C. (1969) · Journal of Bacteriology · doi:10.1128/jb.98.3.1278-1283.1969 · Cited by 99
Peña, J. A., Li, S. Y., Wilson, P. H., Thibodeau, S. A., Szary, A. J., & Versalovic, J. A. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.1.558-568.2004 · Cited by 91
Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach
Tannock, G. W., Wilson, C. M., Loach, D. M., Cook, G. M., Eason, J. R., O’Toole, P. W., Holtrop, G., & Lawley, B. (2011) · The ISME Journal · doi:10.1038/ismej.2011.161 · Cited by 88
Tryptophan Catabolism by Lactobacillus casei and Lactobacillus helveticus Cheese Flavor Adjuncts
Gummalla, S., & Broadbent, J. R. (1999) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(99)75448-2 · Cited by 84
Possible roles of excess tryptophan metabolites in cancer
Chung, K., & Gadupudi, G. S. (2010) · Environmental and Molecular Mutagenesis · doi:10.1002/em.20588 · Cited by 81
Tannock, G. W., Szylit, O., Duval, Y., & Raibaud, P. (1982) · Canadian Journal of Microbiology · doi:10.1139/m82-177 · Cited by 75
Gastric colonization of Candida albicans differs in mice fed commercial and purified diets.
Yamaguchi, N., Sonoyama, K., Kikuchi, H., Nagura, T., Aritsuka, T., & Kawabata, J. (2005) · The Journal of Nutrition · doi:10.1093/jn/135.1.109 · Cited by 69
Denou, E., Berger, B. W., Barretto, C., Panoff, J.-M., Arigoni, F., & Brüssow, H. (2007) · Journal of Bacteriology · doi:10.1128/jb.00991-07 · Cited by 66
Mucosal and disseminated candidiasis in gnotobiotic SCID mice
Balish, E., Jensen, J., WARNER, T. F. C. S., Brekke, J., & Leonard, B. (1993) · Medical Mycology · doi:10.1080/02681219380000161 · Cited by 54
Lactobacilli isolated from the stomach of conventional mice
Roach, S., Savage, D. C., & Tannock, G. W. (1977) · Applied and Environmental Microbiology · doi:10.1128/aem.33.5.1197-1203.1977 · Cited by 51
Karczewska, E., Wojtas, I., Sito, E., Trojanowska, D., Budak, A., Zwolinska-Wcislo, M. M., & Wilk, A. (2009) · PubMed · Cited by 45
Fuentes, S., Egert, M., Jiménez‐Valera, M., Monteoliva‐Sánchez, M., Ruiz‐Bravo, A., & Smidt, H. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00411.x · Cited by 37
The derivation and use of mice which do not harbour lactobacilli in the gastrointestinal tract
Tannock, G. W., & Archibald, R. D. (1984) · Canadian Journal of Microbiology · doi:10.1139/m84-131 · Cited by 35
Gastrointestinal microecology of BALB/c nude mice
Brown, J. F., & Balish, E. (1978) · Applied and Environmental Microbiology · doi:10.1128/aem.36.1.144-159.1978 · Cited by 25
Flagged first, then by citations
Cited by
Sorted by citations
Gut microbiota, metabolites and host immunity
Rooks, M. G., & Garrett, W. S. (2016) · Nature reviews. Immunology · doi:10.1038/nri.2016.42 · Cited by 3,409
Gut Microbiota Regulation of Tryptophan Metabolism in Health and Disease
Agus, A., Planchais, J., & Sokol, H. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.05.003 · Cited by 3,180
Role of the normal gut microbiota
Jandhyala, S. M. (2015) · World Journal of Gastroenterology · doi:10.3748/wjg.v21.i29.8787 · Cited by 3,001
Microbial tryptophan catabolites in health and disease
Roager, H. M., & Licht, T. R. (2018) · Nature Communications · doi:10.1038/s41467-018-05470-4 · Cited by 2,236
Gut microbiome structure and metabolic activity in inflammatory bowel disease
Franzosa, E. A., Sirota-Madi, A., Avila-Pacheco, J., Fornelos, N., Haiser, H. J., Reinker, S., Vatanen, T., Hall, A. B., Mallick, H., McIver, L. J., et al. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0306-4 · Cited by 1,995
Metadata
- Authors
- Zelante, T., Iannitti, R. G., Cunha, C., De Luca, A., Giovannini, G., Pieraccini, G., Zecchi, R., D’Angelo, C., Massi-Benedetti, C., Fallarino, F., Carvalho, A., Puccetti, P., & Romani, L.
- Affiliations
- University of Perugia (IT)
- University of Florence (IT)
- Corresponding author
- Romani, Luigina
- ORCID
- Venue
- Immunity
- Publisher
- Elsevier BV
- Published
- 2013-08
- Volume
- 39
- Issue
- 2
- Pages
- 372-385
- ISSN
- 1074-7613 (ISSN-L)
- OpenAlex
- W2044216294
- Cited by
- 2,614
- References
- 56
- Citations by year
- 2026: 385 · 2025: 285 · 2024: 279 · 2023: 237 · 2022: 268 · 2021: 248 · 2020: 249 · 2019: 179 · 2018: 136 · 2017: 119 · 2016: 100 · 2015: 66 · 2014: 54 · 2013: 4
- FWCI
- 33.47
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Immunity (publishedVersion)
- PubMed (publishedVersion)
- Florence Research (University of Florence) (submittedVersion)
- Funders
- Associazione Italiana per la Ricerca sul Cancro
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Neuroscience › Biological Psychiatry › Tryptophan and brain disorders
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Keywords
- tryptophan catabolites, gut microbiota, aryl hydrocarbon receptor, indole-3-carboxaldehyde, IL-22, mucosal immunity, lactobacilli, Candida albicans, colonization resistance, commensalism, host-microbe interactions, dietary tryptophan
- MeSH terms
- Interleukin-22, Animals, Candida albicans, Candidiasis, Energy Metabolism, Female, Indoles, Interleukins, Mice, Inbred BALB C, Mice, Inbred C3H, Mice, Inbred C57BL, Tryptophan, Mice, SCID, Receptors, Aryl Hydrocarbon, Mice, Knockout, Probiotics, Interleukin-17, Gastrointestinal Tract, Indoleamine-Pyrrole 2,3,-Dioxygenase, Toll-Like Receptor 2, Mice, Basic Helix-Loop-Helix Transcription Factors, Basic Helix-Loop-Helix Proteins, Limosilactobacillus reuteri, Myeloid Differentiation Factor 88, Metagenome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review