The DOI matches its Crossref record.
Review and re-analysis of domain-specific 16S primers
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
No references could be resolved yet.
Research works printed but not linked: 46
- Baker, 1999, Prototheca richardsi, a pathogen of anuran larvae, is related to a clade of protistan parasites near the animal-fungal divergence, Microbiology, 145, 1777, 10.1099/13500872-145-7-1777 · DOI
- Baker, 2001, Bacterial community analysis of Indonesian hot springs, FEMS Microbiol. Lett., 200, 103, 10.1111/j.1574-6968.2001.tb10700.x · doi:10.1111/j.1574-6968.2001.tb10700.x
- Barns, 1994, Remarkable archaeal diversity detected in Yellowstone national Park hot spring environment, Proc. Natl. Acad. Sci. U. S. A., 91, 1609, 10.1073/pnas.91.5.1609 · DOI · Paper page
- Barns, 1996, Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences, PNAS, 93, 9188, 10.1073/pnas.93.17.9188 · DOI · Paper page
- Brunk, 1998, Quantitative measure of small subunit rRNA gene sequences of the Kingdom Korarchaeota, Appl. Environ. Microbiol., 64, 5064, 10.1128/AEM.64.12.5064-5066.1998 · DOI
- Burggraf, 1997, A pivotal archaea group, Nature (London), 385, 780, 10.1038/385780a0 · DOI
- Casamayor, 2002, Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparision of genetic fingerprinting methods in a multipond solar saltern scaling plots, Environ. Microbiol., 4, 338, 10.1046/j.1462-2920.2002.00297.x · DOI · Paper page
- Coloqhoun, J.A., 1997. Discovery of deep-sea actinomycetes. PhD Dissertation. Research School of Biosciences. University of Kent, Canterbury.
- DeLong, 1994, High abundance of Archaea in Antarctic marine picoplankton, Nature, 371, 695, 10.1038/371695a0 · DOI · Paper page
- Elwood, 1985, The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata, Mol. Biol. Evol., 2, 399
- Farelly, 1995, Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species, Appl. Environ. Microbiol., 61, 2798, 10.1128/aem.61.7.2798-2801.1995 · DOI · Paper page
- Groflkopf, 1998, Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval, Appl. Environ. Microbiol., 64, 960, 10.1128/AEM.64.3.960-969.1998 · DOI · Paper page
- Hansen, 1998, Biased 16S rDNA PCR amplication caused by interference from DNA flanking template region, FEMS Microbiol. Ecol., 26, 141, 10.1111/j.1574-6941.1998.tb00500.x · doi:10.1111/j.1574-6941.1998.tb00500.x · Paper page
- Hill, 2000, Methods for assessing the composition and diversity of soil microbial communities, Appl. Soil Ecol., 15, 25, 10.1016/S0929-1393(00)00069-X · DOI · Paper page
- Hohn, 2002, Detection of 16S rDNA sequences representing the novel phylum “Nanoarchaeota”: indication for a wide distribution in high temperature biotopes, Syst. Appl. Microbiol., 25, 551, 10.1078/07232020260517698 · DOI
- Huber, 2002, A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont, Nature, 417, 63, 10.1038/417063a · DOI · Paper page
- Huber, 2003, The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life, Res. Microbiol., 154, 165, 10.1016/S0923-2508(03)00035-4 · DOI
- Hugenholtz, 1998, Novel division level bacterial diversity in a Yellowstone hot spring, J. Bacteriol., 180, 366, 10.1128/JB.180.2.366-376.1998 · DOI · Paper page
- Jurgens, 1997, Novel group within the kingdom Crenarchaeota from boreal forest soil, Appl. Environ. Microbiol., 63, 803, 10.1128/aem.63.2.803-805.1997 · DOI · Paper page
- Jurgens, 2000, Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridisation, FEMS Microbiol. Ecol., 34, 45
- Kim, 2000, A deeply branched novel phylotype found in Japanese paddy soils, Microbiology, 146, 2309, 10.1099/00221287-146-9-2309 · DOI
- Kolganova, 2002, Designing and testing oligonucleotide primers for amplification and sequencing of Archaeal 16S rRNA genes, Mikrobiologiya, 71, 283
- Lee, 1996, Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method, Appl. Environ. Microbiol., 62, 3787, 10.1128/aem.62.10.3787-3793.1996 · DOI
- Lopez-Garcia, 2001, A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions, Environ. Microbiol., 3, 72, 10.1046/j.1462-2920.2001.00162.x · DOI
- López-Garcı́a, 2002, Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila, Environ. Microbiol., 4, 204, 10.1046/j.1462-2920.2002.00286.x · DOI
- MacGregor, 1997, Crenarchaeota in Lake Michigan sediment, Appl. Environ. Microbiol., 63, 1178, 10.1128/aem.63.3.1178-1181.1997 · DOI
- Marteinsson, 2001, Discovery and description of giant submarine smectite submarine cones on the seafloor, Eyjafjordur, Northern Iceland, a novel thermal microbial habitat, App. Environ. Microbiol., 67, 827, 10.1128/AEM.67.2.827-833.2001 · DOI
- Martinez-Murcia, 1995, Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments, FEMS Microbiol. Ecol., 17, 247, 10.1016/0168-6496(95)00029-A · DOI
- McInnery, 1995, Recovery and phylogenetic analysis of novel archaeal rRNA sequences from deep-sea deposit feeder, Appl. Environ. Microbiol., 61, 1646, 10.1128/aem.61.4.1646-1648.1995 · doi:10.1128/aem.61.4.1646-1648.1995
- Nielsen, 1999, Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorous removal reactor, Appl. Environ. Microbiol., 65, 1251, 10.1128/AEM.65.3.1251-1258.1999 · DOI
- Polz, 1998, Bias in template-to-product ratios in multi-template PCR, Appl. Environ. Microbiol., 64, 3724, 10.1128/AEM.64.10.3724-3730.1998 · DOI · Paper page
- Reysenbach, 1992, Differential amplification of rRNA genes by polymerase chain reaction, Appl. Environ. Microbiol., 58, 3417, 10.1128/aem.58.10.3417-3418.1992 · DOI · Paper page
- Reysenbach, 1994, Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park, Appl. Environ. Microbiol., 60, 2113, 10.1128/aem.60.6.2113-2119.1994 · DOI · Paper page
- Rudi, 1997, Strain classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from variable regions V6, V7 and V8, Appl. Environ. Microbiol., 63, 2593, 10.1128/aem.63.7.2593-2599.1997 · DOI · Paper page
- Schleper, 1998, Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilicarchaeon cenarchaeum symbiosum, J. Bacteriol., 180, 5003, 10.1128/JB.180.19.5003-5009.1998 · doi:10.1128/jb.180.19.5003-5009.1998
- Stach, 2001, PCR-SSCP comparison of 16S rDNA sequence diversity in soil obtained using different isolation and purification methods, FEMS Microbiol. Ecol., 36, 139, 10.1111/j.1574-6941.2001.tb00834.x · doi:10.1111/j.1574-6941.2001.tb00834.x · Paper page
- Suzuki, 1996, Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR, Appl. Environ. Microbiol., 62, 625, 10.1128/aem.62.2.625-630.1996 · DOI · Paper page
- Tajima, 2001, Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens, FEMS Microbiol. Lett., 200, 67, 10.1111/j.1574-6968.2001.tb10694.x · DOI
- Theron, 2000, Molecular techniques for determining microbial diversity and community structure in natural environments, Crit. Rev. Microbiol., 26, 37, 10.1080/10408410091154174 · doi:10.1080/10408410091154174
- Van de Peer, 1996, A quantitative map of nucleotide substitution rates in bacterial rRNA, Nucleic Acids Res., 24, 3381, 10.1093/nar/24.17.3381 · DOI · Paper page
- van Waasbergen, 2000, Genetic diversity among Arthrobacter species collected across a heterogeneous series of terrestrial deep-subsurface sediments as determined on the basis of 16S rRNA and recA gene sequences, Appl. Environ. Microbiol., 66, 3454, 10.1128/AEM.66.8.3454-3463.2000 · doi:10.1128/aem.66.8.3454-3463.2000
- Vetriani, 1999, Population structure and phylogenetic characterisation of marine benthic Archaea in deep-sea sediments, Appl. Environ. Microbiol., 65, 4375, 10.1128/AEM.65.10.4375-4384.1999 · DOI · Paper page
- Ward, 1990, 16S rRNA sequences reveal numerous uncultured micro-organisms in a natural community, Nature, 345, 63, 10.1038/345063a0 · DOI · Paper page
- Watanabe, 2001, Design and evaluation of PCR primers to amplify 16S ribosomal DNA fragments used for community fingerprinting, J. Microbiol. Methods, 44, 253, 10.1016/S0167-7012(01)00220-2 · DOI · Paper page
- Whitehead, 1999, Phylogenetic diversity of methanogenic Archaea in swine waste storage pits, FEMS Microbiol. Lett., 179, 223, 10.1111/j.1574-6968.1999.tb08731.x · DOI
- Wintzingerode, 1997, Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis, FEMS Microbiol. Rev., 21, 213, 10.1111/j.1574-6976.1997.tb00351.x · doi:10.1111/j.1574-6976.1997.tb00351.x · Paper page
Cited by
Klindworth, A., Pruesse, E., Schweer, T., Peplies, J., Quast, C., Horn, M., & Glöckner, F. O. (2013) · Nucleic Acids Research · doi:10.1093/nar/gks808 · Cited by 8,850
Development of the Human Infant Intestinal Microbiota
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., & Brown, P. O. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050177 · Cited by 2,877
Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians
Biagi, E., Nylund, L., Candela, M., Ostan, R., Bucci, L., Pini, E., Nikkïla, J., Monti, D., Satokari, R., Franceschi, C., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010667 · Cited by 1,483
Romero, R., Hassan, S. S., Gajer, P., Tarca, A. L., Fadrosh, D. W., Nikita, L., Galuppi, M., Lamont, R. F., Chaemsaithong, P., Miranda, J., et al. (2014) · Microbiome · doi:10.1186/2049-2618-2-4 · Cited by 852
Pyrosequencing analysis of the oral microflora of healthy adults
Keijser, B. J. F., Zaura, E., Huse, S. M., van der Vossen, J. M. B. M., Schuren, F. H. J., Montijn, R. C., ten Cate, J. M., & Crielaard, W. (2008) · Journal of Dental Research · doi:10.1177/154405910808701104 · Cited by 669
Metadata
- Authors
- Baker, G. C., Smith, J. J., & Cowan, D. A.
- Venue
- Journal of Microbiological Methods
- Publisher
- Elsevier BV
- Published
- 2003-12
- Volume
- 55
- Issue
- 3
- Pages
- 541-555
- ISSN
- 0167-7012 (ISSN-L)
- OpenAlex
- W2036647435
- Cited by
- 1,865
- References
- 0
- FWCI
- 10.75
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Review and re-analysis of domain-specific 16S primers. https://app.cochat.ai/papers/10.1016/j.mimet.2003.08.009
- The paper
- Baker, G. C., Smith, J. J., & Cowan, D. A. (2003). Review and re-analysis of domain-specific 16S primers. Journal of Microbiological Methods. https://doi.org/10.1016/j.mimet.2003.08.009
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.